FFCP PHASE1:Mm9::chr19:4100936..4100987,+: Difference between revisions
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{{FFCP|EntrezGene=18739|HGNC=|MCL_coexpression_id=1|UniProt=O35954|association_with_transcript=314bp_to_ENSMUST00000100022,NM_008851,uc008fyo.2_5end|description=CAGE_peak_2_at_Pitpnm1_5end|id=chr19:4100936..4100987,+|ontology_enrichment_celltype=CL:0000117!1.34e-13!23;CL:0000337!1.34e-13!23;CL:0002319!4.24e-12!43;CL:0000221!4.48e-12!44;CL:0000133!4.48e-12!44;CL:0000540!1.92e-11!33;CL:0000047!1.92e-11!33;CL:0000031!1.92e-11!33;CL:0000404!1.92e-11!33;CL:0000055!4.46e-09!50;CL:0000393!1.15e-08!39;CL:0000211!1.15e-08!39|ontology_enrichment_celltype_v019_2=CL:0000117,4.95e-17,23;CL:0000337,4.95e-17,23;CL:0002319,8.54e-10,43;CL:0000221,2.46e-09,44;CL:0000133,2.46e-09,44;CL:0000540,4.60e-09,33;CL:0000047,4.60e-09,33;CL:0000031,4.60e-09,33;CL:0000404,4.60e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!5.67e-33!71;UBERON:0003075!5.67e-33!71;UBERON:0007284!5.67e-33!71;UBERON:0001017!6.29e-32!73;UBERON:0005743!6.29e-32!73;UBERON:0000073!2.02e-30!75;UBERON:0001016!2.02e-30!75;UBERON:0000033!1.64e-29!63;UBERON:0004121!4.30e-29!102;UBERON:0000924!4.30e-29!102;UBERON:0006601!4.30e-29!102;UBERON:0001049!2.02e-27!52;UBERON:0005068!2.02e-27!52;UBERON:0006241!2.02e-27!52;UBERON:0007135!2.02e-27!52;UBERON:0003056!1.43e-26!49;UBERON:0000955!1.91e-26!50;UBERON:0006238!1.91e-26!50;UBERON:0002616!7.52e-26!49;UBERON:0007811!8.19e-24!86;UBERON:0003080!2.81e-21!40;UBERON:0002780!1.08e-20!39;UBERON:0001890!1.08e-20!39;UBERON:0006240!1.08e-20!39;UBERON:0000153!1.08e-20!94;UBERON:0002020!5.50e-20!34;UBERON:0002791!4.92e-17!29;UBERON:0003528!4.92e-17!29;UBERON:0001893!4.92e-17!29;UBERON:0000956!3.25e-12!21;UBERON:0001869!3.25e-12!21;UBERON:0000203!3.25e-12!21;UBERON:0002619!1.50e-10!17;UBERON:0002021!3.38e-08!10;UBERON:0000411!3.38e-08!10;UBERON:0001950!3.38e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0002346,5.51e-38,64;UBERON:0003075,5.51e-38,64;UBERON:0007284,5.51e-38,64;UBERON:0000073,5.27e-36,54;UBERON:0001049,7.03e-34,52;UBERON:0005068,7.03e-34,52;UBERON:0006241,7.03e-34,52;UBERON:0007135,7.03e-34,52;UBERON:0003056,9.82e-34,49;UBERON:0001017,7.53e-33,73;UBERON:0001016,2.72e-31,75;UBERON:0004121,9.41e-31,95;UBERON:0000924,9.41e-31,95;UBERON:0006601,9.41e-31,95;UBERON:0010371,3.39e-30,73;UBERON:0000955,5.55e-30,47;UBERON:0006238,5.55e-30,47;UBERON:0002616,3.12e-29,46;UBERON:0003080,6.49e-27,40;UBERON:0002780,3.67e-26,39;UBERON:0001890,3.67e-26,39;UBERON:0006240,3.67e-26,39;UBERON:0002020,2.99e-25,34;UBERON:0010314,1.49e-22,92;UBERON:0003528,1.88e-21,29;UBERON:0002791,1.88e-21,29;UBERON:0001893,1.88e-21,29;UBERON:0000956,2.99e-15,21;UBERON:0001869,2.99e-15,21;UBERON:0000203,2.99e-15,21;UBERON:0002619,4.10e-13,17;UBERON:0002021,4.31e-10,10;UBERON:0000411,4.31e-10,10;UBERON:0001950,4.31e-10,10;UBERON:0002420,2.33e-07,8;UBERON:0007245,2.33e-07,8;UBERON:0010009,2.33e-07,8;UBERON:0010011,2.33e-07,8;UBERON:0000454,2.33e-07,8;UBERON:0000970,2.59e-07,9;UBERON:0000019,2.59e-07,9;UBERON:0000047,2.59e-07,9;UBERON:0010312,2.59e-07,9;UBERON:0004088,2.59e-07,9;UBERON:0002104,2.59e-07,9;UBERON:0001456,2.59e-07,9;UBERON:0003072,2.59e-07,9;UBERON:0004128,2.59e-07,9;UBERON:0003071,2.59e-07,9;UBERON:0003076,2.72e-07,12;UBERON:0003057,2.72e-07,12|phase1_expression=0.640595388419176,0,0,0,0,0,0,0.258246646883153,0,0.234064526321993,0,0.0797721589953364,0.171200729931206,0.174840804837995,0,0,0,0,0,0,10.0351082378262,0.496454756004426,1.30599894569468,0,0.22940928106717,0,0,0,0,0,0.221730510655305,7.62036808151557,4.92051830067656,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.202753862439029,0,0.782391344348039,1.74420125104357,1.09843091367236,4.08302788055995,1.25987779462826,8.62515386189829,0,0,0.336093799142464,0,0,0.515672092277442,29.9428362072205,32.797440714866,31.0577387718028,0,0,0,0,0,5.39280198933128,16.1371688235053,6.63613518774257,9.04539786822327,7.57169860864975,29.7077023779956,24.2955395046775,9.18680994112155,9.77623804386011,13.7882817991503,28.6301290598411,37.0293280447044,28.1099955858926,33.4991170834692,37.6929091641928,35.9430225684164,21.217907924105,24.1987922313622,24.90611438762,31.2306300602088,25.7692742246376,25.7231235238915,0.075726193333184,0,0.869593466105033,0,0,0.539703191637817,0,0,1.26399978118577,0.340860645156116,0,0,0.704217098883403,0,0,0,0,0,0,1.48439043634778,0,2.07818994690755,0.693941307064543,0.913396434936424,1.61430848079241,1.05505848386836,1.52865319276416,1.0053327306374,0,0,0,0,0,0.484875253135222,0,51.5294202740323,89.8526372229722,0,0.11981512450592,0,0,25.7639899776295,26.5350349634803,32.418822845119,29.0286614721102,36.0558794835766,23.4800490352303,33.9084239811613,0.203678727700633,0.124406970610093,0.252722758433675,11.5743020737561,7.026503919986,10.1156925950728,11.343914177737,12.8099095160358,33.1337750866967,27.1601087003882,34.3885329134205,62.8649190895808,0.431135985865684,0.378212160335639,0.527853372491847,0,0,0,0.205782136407943,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0.0810688095458557,0,0,0,25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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18739 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O35954 | |||
|association_with_transcript=314bp_to_ENSMUST00000100022,NM_008851,uc008fyo.2_5end | |||
|cluster_id=chr19:4100936..4100987,+ | |||
|description=CAGE_peak_2_at_Pitpnm1_5end | |||
|id=chr19:4100936..4100987,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.34e-13!23;CL:0000337!1.34e-13!23;CL:0002319!4.24e-12!43;CL:0000221!4.48e-12!44;CL:0000133!4.48e-12!44;CL:0000540!1.92e-11!33;CL:0000047!1.92e-11!33;CL:0000031!1.92e-11!33;CL:0000404!1.92e-11!33;CL:0000055!4.46e-09!50;CL:0000393!1.15e-08!39;CL:0000211!1.15e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.95e-17,23;CL:0000337,4.95e-17,23;CL:0002319,8.54e-10,43;CL:0000221,2.46e-09,44;CL:0000133,2.46e-09,44;CL:0000540,4.60e-09,33;CL:0000047,4.60e-09,33;CL:0000031,4.60e-09,33;CL:0000404,4.60e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!5.67e-33!71;UBERON:0003075!5.67e-33!71;UBERON:0007284!5.67e-33!71;UBERON:0001017!6.29e-32!73;UBERON:0005743!6.29e-32!73;UBERON:0000073!2.02e-30!75;UBERON:0001016!2.02e-30!75;UBERON:0000033!1.64e-29!63;UBERON:0004121!4.30e-29!102;UBERON:0000924!4.30e-29!102;UBERON:0006601!4.30e-29!102;UBERON:0001049!2.02e-27!52;UBERON:0005068!2.02e-27!52;UBERON:0006241!2.02e-27!52;UBERON:0007135!2.02e-27!52;UBERON:0003056!1.43e-26!49;UBERON:0000955!1.91e-26!50;UBERON:0006238!1.91e-26!50;UBERON:0002616!7.52e-26!49;UBERON:0007811!8.19e-24!86;UBERON:0003080!2.81e-21!40;UBERON:0002780!1.08e-20!39;UBERON:0001890!1.08e-20!39;UBERON:0006240!1.08e-20!39;UBERON:0000153!1.08e-20!94;UBERON:0002020!5.50e-20!34;UBERON:0002791!4.92e-17!29;UBERON:0003528!4.92e-17!29;UBERON:0001893!4.92e-17!29;UBERON:0000956!3.25e-12!21;UBERON:0001869!3.25e-12!21;UBERON:0000203!3.25e-12!21;UBERON:0002619!1.50e-10!17;UBERON:0002021!3.38e-08!10;UBERON:0000411!3.38e-08!10;UBERON:0001950!3.38e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,5.51e-38,64;UBERON:0003075,5.51e-38,64;UBERON:0007284,5.51e-38,64;UBERON:0000073,5.27e-36,54;UBERON:0001049,7.03e-34,52;UBERON:0005068,7.03e-34,52;UBERON:0006241,7.03e-34,52;UBERON:0007135,7.03e-34,52;UBERON:0003056,9.82e-34,49;UBERON:0001017,7.53e-33,73;UBERON:0001016,2.72e-31,75;UBERON:0004121,9.41e-31,95;UBERON:0000924,9.41e-31,95;UBERON:0006601,9.41e-31,95;UBERON:0010371,3.39e-30,73;UBERON:0000955,5.55e-30,47;UBERON:0006238,5.55e-30,47;UBERON:0002616,3.12e-29,46;UBERON:0003080,6.49e-27,40;UBERON:0002780,3.67e-26,39;UBERON:0001890,3.67e-26,39;UBERON:0006240,3.67e-26,39;UBERON:0002020,2.99e-25,34;UBERON:0010314,1.49e-22,92;UBERON:0003528,1.88e-21,29;UBERON:0002791,1.88e-21,29;UBERON:0001893,1.88e-21,29;UBERON:0000956,2.99e-15,21;UBERON:0001869,2.99e-15,21;UBERON:0000203,2.99e-15,21;UBERON:0002619,4.10e-13,17;UBERON:0002021,4.31e-10,10;UBERON:0000411,4.31e-10,10;UBERON:0001950,4.31e-10,10;UBERON:0002420,2.33e-07,8;UBERON:0007245,2.33e-07,8;UBERON:0010009,2.33e-07,8;UBERON:0010011,2.33e-07,8;UBERON:0000454,2.33e-07,8;UBERON:0000970,2.59e-07,9;UBERON:0000019,2.59e-07,9;UBERON:0000047,2.59e-07,9;UBERON:0010312,2.59e-07,9;UBERON:0004088,2.59e-07,9;UBERON:0002104,2.59e-07,9;UBERON:0001456,2.59e-07,9;UBERON:0003072,2.59e-07,9;UBERON:0004128,2.59e-07,9;UBERON:0003071,2.59e-07,9;UBERON:0003076,2.72e-07,12;UBERON:0003057,2.72e-07,12 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0.258246646883153,0,0.234064526321993,0,0.0797721589953364,0.171200729931206,0.174840804837995,0,0,0,0,0,0,10.0351082378262,0.496454756004426,1.30599894569468,0,0.22940928106717,0,0,0,0,0,0.221730510655305,7.62036808151557,4.92051830067656,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.202753862439029,0,0.782391344348039,1.74420125104357,1.09843091367236,4.08302788055995,1.25987779462826,8.62515386189829,0,0,0.336093799142464,0,0,0.515672092277442,29.9428362072205,32.797440714866,31.0577387718028,0,0,0,0,0,5.39280198933128,16.1371688235053,6.63613518774257,9.04539786822327,7.57169860864975,29.7077023779956,24.2955395046775,9.18680994112155,9.77623804386011,13.7882817991503,28.6301290598411,37.0293280447044,28.1099955858926,33.4991170834692,37.6929091641928,35.9430225684164,21.217907924105,24.1987922313622,24.90611438762,31.2306300602088,25.7692742246376,25.7231235238915,0.075726193333184,0,0.869593466105033,0,0,0.539703191637817,0,0,1.26399978118577,0.340860645156116,0,0,0.704217098883403,0,0,0,0,0,0,1.48439043634778,0,2.07818994690755,0.693941307064543,0.913396434936424,1.61430848079241,1.05505848386836,1.52865319276416,1.0053327306374,0,0,0,0,0,0.484875253135222,0,51.5294202740323,89.8526372229722,0,0.11981512450592,0,0,25.7639899776295,26.5350349634803,32.418822845119,29.0286614721102,36.0558794835766,23.4800490352303,33.9084239811613,0.203678727700633,0.124406970610093,0.252722758433675,11.5743020737561,7.026503919986,10.1156925950728,11.343914177737,12.8099095160358,33.1337750866967,27.1601087003882,34.3885329134205,62.8649190895808,0.431135985865684,0.378212160335639,0.527853372491847,0,0,0,0.205782136407943,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0.0810688095458557,0,0,0,25.8656636733877,20.272208638719,0,0,0.639864751605702,0,0.128867461322093,0.201683524623343,0.22237804384487,0.190225626112559,0.474529061544512,0,0.502670417600539,0.198956472041151,0,0,0.216138049874694,0.199141273254367,0.189667900953082,0,0,0,0,0.561086559122548,0.126473074248515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0.167506257441816,0.714130922658041,0.585400943573396,0,0,0.159454768657487,0,0.172684981865896,0,0,0,0,0,11.3990918891332,9.14251155419185,0,0,0.315508219416257,0.780877488593277,0.861693590931196,0.716906393857656,0.445597348164788,0.849229592366497,0.809621403349789,0.876767573733936,0,24.7417413644791,0.851640511249612,0.534196811001766,0.81443479676788,0.164970122972535,0,0,0,0,0.590603785761546,0,0.775284879504663,0.363533729477506,0,0.316036757935816,0,0,8.5109901438447,5.04171063287669,3.62204314591713,2.35770738534752,3.19212420556092,3.21063871683727,4.77192159746151,13.700922710157,0.23467170806371,0,0,0,0,0,0.119372344003136,0,0,8.34413859047294,0.170870880797853,0,0,0,0,0,0.339956859987711,0,0,0,1.10717597753397,0,0,0,0.436725127492355,0.134864346384821,0.165306911450672,0.26175594198403,0,0,13.5286305284206,0,0.330916980914195,1.94451188344048,1.6790777052105,0.506868376472335,0.821500670520278,0.651021924219751,2.20204623293993,3.62376181239009,7.20075015644664,0.316011120628178,2.22997736819181,1.33524244314275,0.25984164595559,1.25318686967237,1.58945083825012,0.841368146639782,0.886137163047463,1.71642964911851,1.295515713135,0.403304740547362,0.0974578807397524,0.769694733122636,1.40252282617883,0,0.221985953374065,0.62799699626633,0.335769232728157,0.19318959403219,0,0.183151624267265,0,0,54.7809287338555,44.6515479411962,42.9671635079547,59.4612010909159,28.773465830367,36.2589070747056,41.851395014372,35.5753750547134,29.9073989929575,34.6899408873719,0.31136204275253,1.99512436700516,3.41467211508268,1.45864030240976,3.98265008993166,2.94149613520023,2.889207461421,2.88449080134452,1.92551525755089,3.03236654116557,3.8021894983536,3.58390048633545,2.43467919421694,3.45735822986294,3.27382173046996,3.81034953026459,3.82418275618023,1.92909220463705,2.88460130562315,4.41596760403192,1.71434626192708,3.90446773550542,3.09967046931517,2.47088908274958,3.67026583619789,3.63842813934209,3.29270351170991,3.15683653725411,2.44447404922551,1.68342681497322,3.91495559809775,4.23569274214923,2.45538625901814,2.63392630016142,2.89359916471712,9.74261253957989,2.33931608445408,3.22306581072447,1.3390183244819,0.882365676478062,0.695603506861264 | |||
|short_description=p2@Pitpnm1 | |||
}} |
Revision as of 02:03, 4 August 2015
Short description: | p2@Pitpnm1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Pitpnm1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 314bp_to_ENSMUST00000100022, NM_008851, uc008fyo.2_5end |
EntrezGene: | 18739 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.95e-17 | 23 |
neuroblast (sensu Vertebrata) | 4.95e-17 | 23 |
neural cell | 8.54e-10 | 43 |
ectodermal cell | 2.46e-09 | 44 |
neurectodermal cell | 2.46e-09 | 44 |
neuron | 4.60e-09 | 33 |
neuronal stem cell | 4.60e-09 | 33 |
neuroblast | 4.60e-09 | 33 |
electrically signaling cell | 4.60e-09 | 33 |