FFCP PHASE1:Hg19::chr8:42033578..42033605,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:42033578..42033605,- to FFCP PHASE1:Hg19::chr8:42033578..42033605,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr8:42033578..42033605,- | |||
|coexpression_cluster_id=C471 | |||
|description=CAGE_peak_at_chr8:42033578..42033605,- | |||
|id=chr8:42033578..42033605,- | |||
|ontology_enrichment_celltype=CL:0000192!2.89e-24!42;CL:0000514!2.89e-24!42;CL:0000680!1.36e-21!57;CL:0000056!1.36e-21!57;CL:0000355!1.36e-21!57;CL:0000183!6.23e-21!59;CL:0000055!2.23e-20!180;CL:0000359!2.32e-20!32;CL:0000187!2.49e-20!54;CL:0000393!1.27e-17!60;CL:0000211!1.27e-17!60;CL:0000222!9.18e-16!119;CL:0000220!1.64e-10!246;CL:0002321!3.35e-10!248;CL:0000057!1.38e-08!75;CL:0002334!7.37e-08!12;CL:0002539!3.09e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.94e-18;32!CL:0000192;2.19e-15;43!CL:1000306;1.54e-12;4!CL:0002547;1.54e-12;4!CL:0002595;6.82e-11;5!CL:0002539;6.22e-10;10!CL:0002622;4.62e-09;3!CL:0002593;1.30e-07;2!CL:0000187;2.66e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,3.16e-18,43;CL:0000514,3.16e-18,43;CL:0000359,8.12e-18,32;CL:0000187,7.03e-15,55;CL:0000680,7.36e-14,58;CL:0000056,7.36e-14,58;CL:0000355,7.36e-14,58;CL:0000393,6.08e-13,61;CL:0000211,6.08e-13,61;CL:1000306,2.36e-12,4;CL:0002547,2.36e-12,4;CL:0002595,6.87e-11,5;CL:0000222,5.06e-10,121;CL:0002539,8.38e-10,10;CL:0002622,1.81e-09,3;CL:0002593,1.31e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000514;2.19e-15;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;6.75e-11;3!DOID:127;6.75e-11;3!DOID:2394;6.60e-10;14!DOID:0060072;2.99e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,6.80e-11,3;DOID:127,6.80e-11,3;DOID:2394,5.34e-10,14;DOID:0060072,3.01e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0002385!1.32e-20!63;UBERON:0001015!1.32e-20!63;UBERON:0000383!1.32e-20!63;UBERON:0001637!4.06e-20!42;UBERON:0003509!4.06e-20!42;UBERON:0004572!4.06e-20!42;UBERON:0001134!8.15e-20!61;UBERON:0002036!8.15e-20!61;UBERON:0003082!8.15e-20!61;UBERON:0004290!6.69e-19!70;UBERON:0000486!8.57e-19!82;UBERON:0000914!5.04e-18!83;UBERON:0002329!5.04e-18!83;UBERON:0003077!5.04e-18!83;UBERON:0003059!5.04e-18!83;UBERON:0007282!5.04e-18!83;UBERON:0009618!5.04e-18!83;UBERON:0007285!5.04e-18!83;UBERON:0005256!2.92e-17!143;UBERON:0004573!1.16e-16!33;UBERON:0004571!1.16e-16!33;UBERON:0002100!4.84e-15!216;UBERON:0002049!6.89e-15!79;UBERON:0007798!6.89e-15!79;UBERON:0004872!7.28e-15!84;UBERON:0003914!2.89e-14!118;UBERON:0001981!1.14e-13!60;UBERON:0007500!1.14e-13!60;UBERON:0004537!1.14e-13!60;UBERON:0006965!1.14e-13!60;UBERON:0000483!4.77e-13!309;UBERON:0000119!4.93e-13!312;UBERON:0004535!5.54e-12!110;UBERON:0000481!9.12e-12!347;UBERON:0000475!1.36e-11!365;UBERON:0000490!2.19e-11!138;UBERON:0000055!2.59e-11!69;UBERON:0001009!3.57e-11!113;UBERON:0001135!3.68e-10!15;UBERON:0000477!1.02e-09!286;UBERON:0003104!1.52e-08!238;UBERON:0009142!1.52e-08!238;UBERON:0004111!1.88e-08!241;UBERON:0000947!8.43e-08!21;UBERON:0010191!8.43e-08!21;UBERON:0003064!1.29e-07!37;UBERON:0003103!1.51e-07!69;UBERON:0004237!3.09e-07!10;UBERON:0004695!3.09e-07!10;UBERON:0002111!3.09e-07!10;UBERON:0004178!3.09e-07!10;UBERON:0000468!4.54e-07!659;UBERON:0006554!8.38e-07!44;UBERON:0000922!9.34e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.27e-21;33!UBERON:0004571;1.27e-21;33!UBERON:0001637;4.25e-16;42!UBERON:0003509;4.25e-16;42!UBERON:0004572;4.25e-16;42!UBERON:0004797;1.54e-12;4!UBERON:0000415;1.54e-12;4!UBERON:0007240;1.54e-12;4!UBERON:0005742;1.54e-12;4!UBERON:0005734;1.54e-12;4!UBERON:0004664;1.54e-12;4!UBERON:0004663;1.54e-12;4!UBERON:0000947;3.84e-12;21!UBERON:0010191;3.84e-12;21!UBERON:0001135;4.82e-11;15!UBERON:0003834;6.82e-11;5!UBERON:0001533;6.82e-11;5!UBERON:0004237;6.22e-10;10!UBERON:0004695;6.22e-10;10!UBERON:0002111;6.22e-10;10!UBERON:0004178;6.22e-10;10!UBERON:0007500;2.15e-08;56!UBERON:0001981;2.15e-08;56!UBERON:0004537;2.15e-08;56!UBERON:0003937;2.64e-08;12!UBERON:0005399;2.64e-08;12!UBERON:0003513;9.34e-08;7!UBERON:0002456;1.30e-07;2!UBERON:0003914;8.82e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,3.62e-25,33;UBERON:0004571,3.62e-25,33;UBERON:0001637,3.12e-21,42;UBERON:0003509,3.12e-21,42;UBERON:0004572,3.12e-21,42;UBERON:0004872,1.78e-14,83;UBERON:0007500,1.10e-13,59;UBERON:0001981,1.10e-13,59;UBERON:0004537,1.10e-13,59;UBERON:0006965,1.10e-13,59;UBERON:0001134,1.17e-12,62;UBERON:0002036,1.17e-12,62;UBERON:0003082,1.17e-12,62;UBERON:0000415,2.36e-12,4;UBERON:0007240,2.36e-12,4;UBERON:0005742,2.36e-12,4;UBERON:0005734,2.36e-12,4;UBERON:0004664,2.36e-12,4;UBERON:0004663,2.36e-12,4;UBERON:0002385,4.10e-12,64;UBERON:0001015,4.10e-12,64;UBERON:0000383,4.10e-12,64;UBERON:0000947,5.81e-12,21;UBERON:0010191,5.81e-12,21;UBERON:0003914,1.72e-11,117;UBERON:0000055,3.03e-11,68;UBERON:0003834,6.87e-11,5;UBERON:0001533,6.87e-11,5;UBERON:0001135,7.01e-11,15;UBERON:0005256,1.03e-10,122;UBERON:0000486,1.71e-10,83;UBERON:0002329,1.85e-10,71;UBERON:0003059,1.85e-10,71;UBERON:0007282,1.85e-10,71;UBERON:0004290,1.85e-10,71;UBERON:0009618,1.85e-10,71;UBERON:0002049,2.00e-10,78;UBERON:0007798,2.00e-10,78;UBERON:0003077,3.00e-10,72;UBERON:0007285,3.00e-10,72;UBERON:0007503,3.04e-10,78;UBERON:0007524,4.78e-10,73;UBERON:0004237,8.38e-10,10;UBERON:0004695,8.38e-10,10;UBERON:0002111,8.38e-10,10;UBERON:0004178,8.38e-10,10;UBERON:0004535,1.24e-09,109;UBERON:0001009,3.20e-09,112;UBERON:0003104,6.71e-09,160;UBERON:0009142,6.71e-09,160;UBERON:0000490,1.32e-08,148;UBERON:0003937,1.92e-08,12;UBERON:0005399,1.92e-08,12;UBERON:0003513,9.38e-08,7;UBERON:0002456,1.31e-07,2;UBERON:0000926,1.68e-07,315;UBERON:0004120,1.68e-07,315;UBERON:0006603,1.68e-07,315;UBERON:0000483,2.61e-07,306;UBERON:0000119,3.80e-07,309;UBERON:0004797,4.66e-07,7;UBERON:0005156,5.27e-07,59;UBERON:0000990,5.27e-07,59;UBERON:0004111,6.72e-07,240;UBERON:0005406,7.76e-07,2;UBERON:0002367,9.87e-07,11;UBERON:0010147,9.87e-07,11;UBERON:0009846,9.87e-07,11;UBERON:0003353,9.87e-07,11;UBERON:0004902,9.87e-07,11;UBERON:0003820,9.87e-07,11;UBERON:0009847,9.87e-07,11 | |||
|phase1_expression=0.181678379270557,0.428201047781966,1.9733616573436,0,0,1.74467704820074,0,0,0,0.737201809504527,0.697801167972428,0.655324116390517,0.527533956456907,0.123766352960047,0.331397375727916,0,1.20538905604795,1.46062018077475,0.487932798790507,0.123121058076788,0,1.25381888591235,0,0.273748850145768,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0,0,0,0,0,0,0.189069634328136,0.886917589850256,0.790513071238134,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0.208994966536811,0,0,0,0,0,0,0,0.81014194788176,0,0.22452937262617,0.112611480483322,0,0,0.183201743930407,0,0,0.436094052142534,0,1.2663051166458,1.32409180813219,9.46560848471085,4.965357350777,1.68203280042692,0,0,0.311211035399766,0.134710672069688,0.163461903113459,0.151357427644931,0,0.234321431833797,0.312160076830321,0,0.149448680551801,0.117434498643765,0.161872944368132,0.140450806702248,0,0.245668634623536,0.103325781175765,0,0.494533858557114,0,0,0.505008341862199,0.375355559615893,0,0,0,0.300476117813194,0.453728732640084,0.358779271377724,0,0,0,0,0,0,0.168776332241266,0,0.252433774244115,0,0.323292113637624,0,0,0,0.193260853163297,1.36373060295417,0.286804595389004,0,0,0,0.10366105501537,0.252320850875628,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0.857839051492628,0.109750285408626,0,0,0.370353780634118,0,3.11980435583874,1.44331342025273,0,0.469634776943287,0.144366447761074,0,0,0,0,0,0,0,0,0,0.992425680696705,0.0895585227028483,0,0.766765358330422,0,0.088048434013226,0,0.144119953416961,0,0,0,0,0,0.205654985406647,0,0,0,0.43596006883328,0,0.129271715757778,0,0,1.32969058292435,0,0.771622122786426,0,0,0.428933980974443,0,0,0,1.42156779497018,0,4.22015127883421,2.61460037580088,1.09970290300263,0,0,0,0,0,0,0.434343920002738,0.410952645100767,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.24538298343828,1.00034104211935,0,0,0.178428988797162,0,0.234282829985426,0,0,1.03473071292505,0,0.184369168541703,0.434418072340414,0,0.686286847621712,0,0,0,0,0,0.604780586659361,0.248107807818777,0.460385919864187,0.280660094433074,1.02511319404561,0.511707249066704,0.482561763430822,1.48418066444991,0.771048469013278,0.532685175939381,0.164254312027618,1.55776328755086,0.232420756919918,0,3.20810352485256,0,1.83703117063371,1.45672934405374,1.70461739447251,0.902399225814824,0.308061348417659,0,1.46139224653261,0.211103257785751,0,0.680374821106063,0.215915916102139,0,1.35473218771926,0,0.509752546090077,0,2.23874754722178,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0.154048617114644,0,0,0.107420244868274,0,0.340906509664404,0.0890320356467374,0,0.192190067365106,0,0,1.39453664789186,12.9073062200562,0.6970372701606,1.54016790088044,1.06461206063404,0.869932992075073,0.9266210955196,1.28812398067792,0.372158369359667,0.316379424718726,0.38126038784765,0.767693373934002,0.42793898803392,0.318203247925937,4.70969184119538,1.07923474549989,0.823611089208164,1.53156123049392,1.81964233415984,3.17020642346017,0.842516912477962,0,7.06769119930725,4.22600587027022,0.9554993798559,5.09059555033366,5.65040583101214,0.551365343546124,5.97095077717098,9.20746859032902,0.578775534266688,0,0.405820753925408,0.6196469961995,0.563391205064483,0.286822704408103,0,0.35667105148125,0.709522128141196,0.422215270595328,0,0.379473173765715,2.44954304171488,0.288666338176536,0,0,0,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0.796991953004279,0,0,0.409074730008619,0,0.933118762985422,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0.724999575434793,0,0.254253650292766,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0.632994193584081,0,0,0,0.995261931078505,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0,0,0,0,0.261177619741208,0.34945333648406,0,0,0,0,0.193978032976839,0,0.225980740780532,0.411125773940253,0,0,0,0,0,0.999048047910651,0,0,0,0,0,0.235694034616795,0.67952103036807,0.523014231561666,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0,0,0,0,0,0,0.472834243795189,0.104909176269996,0.105600336519406,0.537862017998534,0,0.714695326373367,0,0,6.51599522104455,21.6055372800317,21.2281784071116,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.64589860762504,0,0,0.447764408660622,0.233713309847224,0.554805861502613,0,0,0.889811221596536,0.457680136793847,2.11723293268535,1.24349760466224,0.147855149989634,0.159296767163702,0,0.310525913752519,4.14706207840855,1.32920857278997,3.65221543268214,0,17.8978449719334,2.44122439922797,0,0,1.85613503951397,2.78667122089031,2.40016658797892,0,0,0,0,0,0,0,0,0.244736704506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| ||
|short_description=p@chr8:42033578..42033605,- | |||
}} | }} |
Latest revision as of 18:29, 31 July 2015
Short description: | p@chr8:42033578..42033605, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr8:42033578..42033605, - |
Coexpression cluster: | C471_Smooth_Fibroblast_leiomyoma_mesenchymal_Mesothelial_meningioma_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 3.16e-18 | 43 |
smooth muscle myoblast | 3.16e-18 | 43 |
vascular associated smooth muscle cell | 8.12e-18 | 32 |
muscle cell | 7.03e-15 | 55 |
muscle precursor cell | 7.36e-14 | 58 |
myoblast | 7.36e-14 | 58 |
multi-potent skeletal muscle stem cell | 7.36e-14 | 58 |
electrically responsive cell | 6.08e-13 | 61 |
electrically active cell | 6.08e-13 | 61 |
fibroblast of tunica adventitia of artery | 2.36e-12 | 4 |
fibroblast of the aortic adventitia | 2.36e-12 | 4 |
smooth muscle cell of the subclavian artery | 6.87e-11 | 5 |
mesodermal cell | 5.06e-10 | 121 |
aortic smooth muscle cell | 8.38e-10 | 10 |
prostate stromal cell | 1.81e-09 | 3 |
smooth muscle cell of the internal thoracic artery | 1.31e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 6.80e-11 | 3 |
leiomyoma | 6.80e-11 | 3 |
ovarian cancer | 5.34e-10 | 14 |
benign neoplasm | 3.01e-08 | 4 |