FFCP PHASE1:Hg19::chr7:54879666..54879725,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:54879666..54879725,- | |||
|coexpression_cluster_id=C418 | |||
|description=CAGE_peak_at_chr7:54879666..54879725,- | |description=CAGE_peak_at_chr7:54879666..54879725,- | ||
|id=chr7:54879666..54879725,- | |id=chr7:54879666..54879725,- | ||
|ontology_enrichment_celltype=CL:0000183!7.12e-11!59;CL:0000192!3.13e-10!42;CL:0000514!3.13e-10!42;CL:0000187!1.54e-09!54;CL:0000680!1.95e-09!57;CL:0000056!1.95e-09!57;CL:0000355!1.95e-09!57;CL:0000393!7.19e-08!60;CL:0000211!7.19e-08!60 | |ontology_enrichment_celltype=CL:0000183!7.12e-11!59;CL:0000192!3.13e-10!42;CL:0000514!3.13e-10!42;CL:0000187!1.54e-09!54;CL:0000680!1.95e-09!57;CL:0000056!1.95e-09!57;CL:0000355!1.95e-09!57;CL:0000393!7.19e-08!60;CL:0000211!7.19e-08!60 | ||
|ontology_enrichment_celltype_v019=CL:0002195;5.80e-10;2!CL:0002571;5.80e-10;2!CL:0002549;4.33e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002195,5.81e-10,2;CL:0002571,5.81e-10,2;CL:0002549,8.41e-09,2;CL:0000192,1.12e-07,43;CL:0000514,1.12e-07,43 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.16e-13;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001737!1.95e-14!9;UBERON:0000481!3.10e-11!347;UBERON:0003104!8.93e-10!238;UBERON:0009142!8.93e-10!238;UBERON:0002200!1.09e-08!11;UBERON:0006876!1.09e-08!11;UBERON:0004921!1.75e-08!129;UBERON:0004185!1.75e-08!129;UBERON:0001134!2.48e-08!61;UBERON:0002036!2.48e-08!61;UBERON:0003082!2.48e-08!61;UBERON:0004119!3.27e-08!169;UBERON:0000925!3.27e-08!169;UBERON:0006595!3.27e-08!169;UBERON:0000914!6.66e-08!83;UBERON:0002329!6.66e-08!83;UBERON:0003077!6.66e-08!83;UBERON:0003059!6.66e-08!83;UBERON:0007282!6.66e-08!83;UBERON:0009618!6.66e-08!83;UBERON:0007285!6.66e-08!83;UBERON:0002385!7.71e-08!63;UBERON:0001015!7.71e-08!63;UBERON:0000383!7.71e-08!63;UBERON:0004290!9.21e-08!70;UBERON:0001557!1.09e-07!19;UBERON:0000923!4.64e-07!604;UBERON:0005291!4.64e-07!604;UBERON:0006598!4.64e-07!604;UBERON:0002532!4.64e-07!604;UBERON:0002050!5.39e-07!605;UBERON:0005423!5.39e-07!605;UBERON:0005256!5.79e-07!143;UBERON:0001007!6.26e-07!155;UBERON:0001555!6.26e-07!155;UBERON:0007026!6.26e-07!155;UBERON:0000922!6.49e-07!612;UBERON:0005284!7.85e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;7.27e-40;9!UBERON:0001557;7.27e-40;9!UBERON:0000072;1.88e-15;37!UBERON:0000065;7.95e-12;44!UBERON:0005629;4.33e-09;2!UBERON:0005358;4.33e-09;2!UBERON:0001886;4.33e-09;2!UBERON:0004086;4.33e-09;2!UBERON:0005282;4.33e-09;2!UBERON:0005281;4.33e-09;2!UBERON:0005284;7.37e-08;5!UBERON:0001004;9.02e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,7.37e-40,9;UBERON:0001557,5.82e-18,19;UBERON:0008947,2.04e-14,38;UBERON:0003258,2.04e-14,38;UBERON:0004921,6.51e-14,118;UBERON:0000072,4.68e-13,47;UBERON:0001007,1.78e-11,145;UBERON:0001555,1.78e-11,145;UBERON:0007026,1.78e-11,145;UBERON:0000065,5.45e-11,54;UBERON:0004119,6.66e-11,160;UBERON:0000925,6.66e-11,160;UBERON:0006595,6.66e-11,160;UBERON:0011216,6.67e-11,223;UBERON:0001004,6.18e-10,74;UBERON:0001041,2.27e-09,87;UBERON:0005629,8.41e-09,2;UBERON:0005358,8.41e-09,2;UBERON:0001886,8.41e-09,2;UBERON:0004086,8.41e-09,2;UBERON:0005282,8.41e-09,2;UBERON:0005281,8.41e-09,2;UBERON:0005284,1.31e-07,5 | |||
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| ||
|short_description=p@chr7:54879666..54879725,- | |short_description=p@chr7:54879666..54879725,- | ||
}} | }} |
Latest revision as of 10:46, 31 July 2015
Short description: | p@chr7:54879666..54879725, - |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:54879666..54879725, - |
Coexpression cluster: | C418_normal_Melanocyte_Hep2_cervical_umbilical_osteosarcoma_gall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatic stem cell | 5.81e-10 | 2 |
hepatic mesenchymal stem cell | 5.81e-10 | 2 |
fibroblast of choroid plexus | 8.41e-09 | 2 |
smooth muscle cell | 1.12e-07 | 43 |
smooth muscle myoblast | 1.12e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
larynx | 7.37e-40 | 9 |
upper respiratory tract | 5.82e-18 | 19 |
respiratory primordium | 2.04e-14 | 38 |
endoderm of foregut | 2.04e-14 | 38 |
subdivision of digestive tract | 6.51e-14 | 118 |
segment of respiratory tract | 4.68e-13 | 47 |
digestive system | 1.78e-11 | 145 |
digestive tract | 1.78e-11 | 145 |
primitive gut | 1.78e-11 | 145 |
respiratory tract | 5.45e-11 | 54 |
endoderm-derived structure | 6.66e-11 | 160 |
endoderm | 6.66e-11 | 160 |
presumptive endoderm | 6.66e-11 | 160 |
organ system subdivision | 6.67e-11 | 223 |
respiratory system | 6.18e-10 | 74 |
foregut | 2.27e-09 | 87 |
vascular plexus | 8.41e-09 | 2 |
ventricle of nervous system | 8.41e-09 | 2 |
choroid plexus | 8.41e-09 | 2 |
brain ventricle | 8.41e-09 | 2 |
ventricular system of brain | 8.41e-09 | 2 |
ventricular system of central nervous system | 8.41e-09 | 2 |
brain vasculature | 1.31e-07 | 5 |