FFCP PHASE1:Hg19::chr6:44043276..44043289,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:44043276..44043289,+ | |||
|description=CAGE_peak_at_chr6:44043276..44043289,+ | |description=CAGE_peak_at_chr6:44043276..44043289,+ | ||
|id=chr6:44043276..44043289,+ | |id=chr6:44043276..44043289,+ | ||
|ontology_enrichment_celltype=CL:0000066!3.06e-08!254;CL:0000181!8.99e-08!12;CL:0000417!8.99e-08!12;CL:0000668!8.99e-08!12;CL:0000414!8.99e-08!12;CL:0000412!8.99e-08!12;CL:0000182!8.99e-08!12 | |ontology_enrichment_celltype=CL:0000066!3.06e-08!254;CL:0000181!8.99e-08!12;CL:0000417!8.99e-08!12;CL:0000668!8.99e-08!12;CL:0000414!8.99e-08!12;CL:0000412!8.99e-08!12;CL:0000182!8.99e-08!12 | ||
|ontology_enrichment_celltype_v019=CL:0000322;9.45e-18;3!CL:0000182;1.44e-17;12!CL:0002202;8.37e-07;9!CL:0002632;8.37e-07;9 | |ontology_enrichment_celltype_v019=CL:0000322;9.45e-18;3!CL:0000182;1.44e-17;12!CL:0002202;8.37e-07;9!CL:0002632;8.37e-07;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000322,9.46e-18,3;CL:0000182,1.57e-17,12;CL:0000223,1.42e-08,58;CL:0002202,8.37e-07,9;CL:0002632,8.37e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.69e-19;11!UBERON:0009847;9.45e-18;3!UBERON:0003353;9.45e-18;3!UBERON:0009497;2.63e-16;13!UBERON:0001041;9.59e-16;30!UBERON:0003104;3.48e-07;31 | |ontology_enrichment_development_v019=UBERON:0004161;4.69e-19;11!UBERON:0009847;9.45e-18;3!UBERON:0003353;9.45e-18;3!UBERON:0009497;2.63e-16;13!UBERON:0001041;9.59e-16;30!UBERON:0003104;3.48e-07;31 | ||
|ontology_enrichment_disease=DOID:305!1.26e-22!106;DOID:0050687!7.34e-19!143;DOID:162!2.03e-11!235;DOID:14566!4.60e-11!239;DOID:7!4.04e-08!39 | |ontology_enrichment_disease=DOID:305!1.26e-22!106;DOID:0050687!7.34e-19!143;DOID:162!2.03e-11!235;DOID:14566!4.60e-11!239;DOID:7!4.04e-08!39 | ||
|ontology_enrichment_disease_v019=DOID:3910;7.14e-26;2!DOID:7;7.88e-13;39!DOID:3908;3.26e-11;5!DOID:1325;2.18e-08;7!DOID:3904;2.18e-08;7!DOID:3905;8.37e-07;9 | |ontology_enrichment_disease_v019=DOID:3910;7.14e-26;2!DOID:7;7.88e-13;39!DOID:3908;3.26e-11;5!DOID:1325;2.18e-08;7!DOID:3904;2.18e-08;7!DOID:3905;8.37e-07;9 | ||
|ontology_enrichment_disease_v019_2=DOID:3910,7.14e-26,2;DOID:7,2.47e-12,39;DOID:3908,3.26e-11,5;DOID:1325,2.18e-08,7;DOID:3904,2.18e-08,7;DOID:305,2.62e-08,106;DOID:3905,8.37e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0001737!7.82e-29!9;UBERON:0001557!5.21e-17!19;UBERON:0008947!1.73e-12!38;UBERON:0003258!1.73e-12!38;UBERON:0000077!5.09e-11!130;UBERON:0001041!8.05e-11!98;UBERON:0000065!3.17e-10!53;UBERON:0000072!5.78e-10!46;UBERON:0004921!1.62e-08!129;UBERON:0004185!1.62e-08!129;UBERON:0001007!1.62e-08!155;UBERON:0001555!1.62e-08!155;UBERON:0007026!1.62e-08!155;UBERON:0004119!1.72e-07!169;UBERON:0000925!1.72e-07!169;UBERON:0006595!1.72e-07!169;UBERON:0001004!5.34e-07!72 | |ontology_enrichment_uberon=UBERON:0001737!7.82e-29!9;UBERON:0001557!5.21e-17!19;UBERON:0008947!1.73e-12!38;UBERON:0003258!1.73e-12!38;UBERON:0000077!5.09e-11!130;UBERON:0001041!8.05e-11!98;UBERON:0000065!3.17e-10!53;UBERON:0000072!5.78e-10!46;UBERON:0004921!1.62e-08!129;UBERON:0004185!1.62e-08!129;UBERON:0001007!1.62e-08!155;UBERON:0001555!1.62e-08!155;UBERON:0007026!1.62e-08!155;UBERON:0004119!1.72e-07!169;UBERON:0000925!1.72e-07!169;UBERON:0006595!1.72e-07!169;UBERON:0001004!5.34e-07!72 | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;7.14e-26;2!UBERON:0002173;7.14e-26;2!UBERON:0002186;7.14e-26;2!UBERON:0004821;9.45e-18;3!UBERON:0007499;9.45e-18;3!UBERON:0003215;9.45e-18;3!UBERON:0010368;9.45e-18;3!UBERON:0009911;9.45e-18;3!UBERON:0002299;9.45e-18;3!UBERON:0006524;9.45e-18;3!UBERON:0008874;9.45e-18;3!UBERON:0002169;9.45e-18;3!UBERON:0004894;9.45e-18;3!UBERON:0009856;1.13e-13;4!UBERON:0002107;1.63e-11;19!UBERON:0006925;1.63e-11;19!UBERON:0002423;5.27e-09;25!UBERON:0002368;3.48e-07;33 | |ontology_enrichment_uberon_v019=UBERON:0004903;7.14e-26;2!UBERON:0002173;7.14e-26;2!UBERON:0002186;7.14e-26;2!UBERON:0004821;9.45e-18;3!UBERON:0007499;9.45e-18;3!UBERON:0003215;9.45e-18;3!UBERON:0010368;9.45e-18;3!UBERON:0009911;9.45e-18;3!UBERON:0002299;9.45e-18;3!UBERON:0006524;9.45e-18;3!UBERON:0008874;9.45e-18;3!UBERON:0002169;9.45e-18;3!UBERON:0004894;9.45e-18;3!UBERON:0009856;1.13e-13;4!UBERON:0002107;1.63e-11;19!UBERON:0006925;1.63e-11;19!UBERON:0002423;5.27e-09;25!UBERON:0002368;3.48e-07;33 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,7.14e-26,2;UBERON:0002173,7.14e-26,2;UBERON:0002186,7.14e-26,2;UBERON:0007499,1.15e-18,25;UBERON:0009856,5.50e-18,26;UBERON:0004821,9.46e-18,3;UBERON:0003215,9.46e-18,3;UBERON:0010368,9.46e-18,3;UBERON:0009911,9.46e-18,3;UBERON:0002299,9.46e-18,3;UBERON:0006524,9.46e-18,3;UBERON:0008874,9.46e-18,3;UBERON:0002169,9.46e-18,3;UBERON:0004894,9.46e-18,3;UBERON:0002107,1.72e-11,19;UBERON:0006925,1.72e-11,19;UBERON:0008836,1.72e-11,19;UBERON:0005911,1.66e-10,82;UBERON:0008835,4.53e-10,22;UBERON:0003894,4.53e-10,22;UBERON:0009854,1.12e-09,23;UBERON:0003929,3.71e-09,54;UBERON:0009497,5.49e-09,25;UBERON:0000015,5.49e-09,25;UBERON:0002423,5.49e-09,25;UBERON:0006235,5.49e-09,25;UBERON:0004161,5.49e-09,25;UBERON:0002530,1.88e-08,59;UBERON:0004921,1.75e-07,118;UBERON:0002365,1.92e-07,31;UBERON:0002330,1.92e-07,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0.241011029883482,0.220587945464788,0,0.237270619111097,0,0.588664395376038,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422250816255987,0,0,0,0,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0.262379999988587,0,0,1.5255219017566,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.945398187686684,1.31865373409866,2.76354529802158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471797825567689,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,1.89110145414349,0,0,0,0,0,0.431855182437243,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0.241011029883482,0.220587945464788,0,0.237270619111097,0,0.588664395376038,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422250816255987,0,0,0,0,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0.262379999988587,0,0,1.5255219017566,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.945398187686684,1.31865373409866,2.76354529802158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471797825567689,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,1.89110145414349,0,0,0,0,0,0.431855182437243,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr6:44043276..44043289,+ | |short_description=p@chr6:44043276..44043289,+ | ||
}} | }} |
Latest revision as of 01:54, 31 July 2015
Short description: | p@chr6:44043276..44043289, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:44043276..44043289, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 9.46e-18 | 3 |
hepatocyte | 1.57e-17 | 12 |
endodermal cell | 1.42e-08 | 58 |
epithelial cell of tracheobronchial tree | 8.37e-07 | 9 |
epithelial cell of lower respiratory tract | 8.37e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 7.14e-26 | 2 |
alveolar duct | 7.14e-26 | 2 |
bronchiole | 7.14e-26 | 2 |
epithelial sac | 1.15e-18 | 25 |
sac | 5.50e-18 | 26 |
pulmonary alveolus epithelium | 9.46e-18 | 3 |
alveolus | 9.46e-18 | 3 |
pulmonary lobule | 9.46e-18 | 3 |
lobule | 9.46e-18 | 3 |
alveolus of lung | 9.46e-18 | 3 |
alveolar system | 9.46e-18 | 3 |
pulmonary acinus | 9.46e-18 | 3 |
alveolar sac | 9.46e-18 | 3 |
alveolar wall | 9.46e-18 | 3 |
liver | 1.72e-11 | 19 |
digestive gland | 1.72e-11 | 19 |
liver bud | 1.72e-11 | 19 |
endo-epithelium | 1.66e-10 | 82 |
hepatic diverticulum | 4.53e-10 | 22 |
liver primordium | 4.53e-10 | 22 |
digestive tract diverticulum | 1.12e-09 | 23 |
gut epithelium | 3.71e-09 | 54 |
epithelium of foregut-midgut junction | 5.49e-09 | 25 |
anatomical boundary | 5.49e-09 | 25 |
hepatobiliary system | 5.49e-09 | 25 |
foregut-midgut junction | 5.49e-09 | 25 |
septum transversum | 5.49e-09 | 25 |
gland | 1.88e-08 | 59 |
subdivision of digestive tract | 1.75e-07 | 118 |
exocrine gland | 1.92e-07 | 31 |
exocrine system | 1.92e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 7.14e-26 | 2 |
disease of anatomical entity | 2.47e-12 | 39 |
non-small cell lung carcinoma | 3.26e-11 | 5 |
bronchus cancer | 2.18e-08 | 7 |
bronchogenic carcinoma | 2.18e-08 | 7 |
carcinoma | 2.62e-08 | 106 |
lung carcinoma | 8.37e-07 | 9 |