FFCP PHASE1:Hg19::chr6:138413287..138413316,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:138413287..138413316,+ | |||
|coexpression_cluster_id=C1043 | |||
|description=CAGE_peak_at_chr6:138413287..138413316,+ | |description=CAGE_peak_at_chr6:138413287..138413316,+ | ||
|id=chr6:138413287..138413316,+ | |id=chr6:138413287..138413316,+ | ||
|ontology_enrichment_celltype=CL:0000066!7.76e-37!254;CL:0002076!1.19e-15!43;CL:0000223!3.13e-14!59;CL:0002321!6.58e-12!248;CL:0000220!9.80e-12!246;CL:0002251!1.08e-10!21;CL:0000548!1.74e-07!679;CL:0000004!1.74e-07!679;CL:0000255!1.74e-07!679;CL:0000012!4.94e-07!682 | |ontology_enrichment_celltype=CL:0000066!7.76e-37!254;CL:0002076!1.19e-15!43;CL:0000223!3.13e-14!59;CL:0002321!6.58e-12!248;CL:0000220!9.80e-12!246;CL:0002251!1.08e-10!21;CL:0000548!1.74e-07!679;CL:0000004!1.74e-07!679;CL:0000255!1.74e-07!679;CL:0000012!4.94e-07!682 | ||
|ontology_enrichment_celltype_v019=CL:0002076;2.84e-12;42!CL:0002251;4.72e-12;20!CL:0002159;1.28e-09;14!CL:0000349;5.58e-07;19!CL:0000244;6.29e-07;4!CL:0000731;6.29e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.20e-25,253;CL:0002076,6.87e-16,42;CL:0000223,4.29e-13,58;CL:0002251,1.15e-12,20;CL:0002159,2.50e-09,14;CL:0002077,1.93e-07,34;CL:0000076,4.74e-07,63;CL:0000349,5.12e-07,19;CL:0000244,6.53e-07,4;CL:0000731,6.53e-07,4;CL:0002321,8.74e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000223;3.11e-07;58 | |||
|ontology_enrichment_disease=DOID:305!1.07e-14!106;DOID:0050687!8.79e-13!143;DOID:14566!5.06e-07!239 | |ontology_enrichment_disease=DOID:305!1.07e-14!106;DOID:0050687!8.79e-13!143;DOID:14566!5.06e-07!239 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.06e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.21e-14!169;UBERON:0000925!2.21e-14!169;UBERON:0006595!2.21e-14!169;UBERON:0000161!5.56e-12!35;UBERON:0001004!7.28e-12!72;UBERON:0001007!2.12e-10!155;UBERON:0001555!2.12e-10!155;UBERON:0007026!2.12e-10!155;UBERON:0000166!8.29e-10!21;UBERON:0005156!8.55e-10!59;UBERON:0000990!8.55e-10!59;UBERON:0003102!1.41e-09!95;UBERON:0003100!1.66e-08!41;UBERON:0000077!2.69e-08!130;UBERON:0004921!3.40e-08!129;UBERON:0004185!3.40e-08!129;UBERON:0003134!1.62e-07!37;UBERON:0000474!1.62e-07!37;UBERON:0004923!2.21e-07!57;UBERON:0005795!2.28e-07!22;UBERON:0003133!2.33e-07!48;UBERON:0000165!2.83e-07!28;UBERON:0000930!2.83e-07!28;UBERON:0000464!2.83e-07!104;UBERON:0003104!3.21e-07!238;UBERON:0009142!3.21e-07!238;UBERON:0001444!3.24e-07!48;UBERON:0003975!3.41e-07!22;UBERON:0005631!5.12e-07!14;UBERON:0000158!5.12e-07!14;UBERON:0000995!8.67e-07!21;UBERON:0001737!8.95e-07!9;UBERON:0004175!9.35e-07!25 | |ontology_enrichment_uberon=UBERON:0004119!2.21e-14!169;UBERON:0000925!2.21e-14!169;UBERON:0006595!2.21e-14!169;UBERON:0000161!5.56e-12!35;UBERON:0001004!7.28e-12!72;UBERON:0001007!2.12e-10!155;UBERON:0001555!2.12e-10!155;UBERON:0007026!2.12e-10!155;UBERON:0000166!8.29e-10!21;UBERON:0005156!8.55e-10!59;UBERON:0000990!8.55e-10!59;UBERON:0003102!1.41e-09!95;UBERON:0003100!1.66e-08!41;UBERON:0000077!2.69e-08!130;UBERON:0004921!3.40e-08!129;UBERON:0004185!3.40e-08!129;UBERON:0003134!1.62e-07!37;UBERON:0000474!1.62e-07!37;UBERON:0004923!2.21e-07!57;UBERON:0005795!2.28e-07!22;UBERON:0003133!2.33e-07!48;UBERON:0000165!2.83e-07!28;UBERON:0000930!2.83e-07!28;UBERON:0000464!2.83e-07!104;UBERON:0003104!3.21e-07!238;UBERON:0009142!3.21e-07!238;UBERON:0001444!3.24e-07!48;UBERON:0003975!3.41e-07!22;UBERON:0005631!5.12e-07!14;UBERON:0000158!5.12e-07!14;UBERON:0000995!8.67e-07!21;UBERON:0001737!8.95e-07!9;UBERON:0004175!9.35e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0000161;3.98e-12;19!UBERON:0000166;3.98e-12;19!UBERON:0001737;2.63e-11;9!UBERON:0001557;2.63e-11;9!UBERON:0000165;2.93e-09;28!UBERON:0003729;1.96e-08;13!UBERON:0001004;3.27e-08;65!UBERON:0000344;4.34e-08;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,7.26e-15,74;UBERON:0000166,5.76e-13,22;UBERON:0000161,6.63e-12,36;UBERON:0001737,3.05e-11,9;UBERON:0004119,1.92e-10,160;UBERON:0000925,1.92e-10,160;UBERON:0006595,1.92e-10,160;UBERON:0000165,6.78e-10,29;UBERON:0000930,6.78e-10,29;UBERON:0003102,8.66e-09,99;UBERON:0003729,1.70e-08,13;UBERON:0003100,3.67e-08,41;UBERON:0000344,4.41e-08,20;UBERON:0001557,1.07e-07,19;UBERON:0000033,1.11e-07,56;UBERON:0005631,1.65e-07,14;UBERON:0000158,1.65e-07,14;UBERON:0005795,1.95e-07,22;UBERON:0003134,2.64e-07,37;UBERON:0000474,2.64e-07,37;UBERON:0003975,3.39e-07,22;UBERON:0000153,5.89e-07,62;UBERON:0007811,5.89e-07,62;UBERON:0000065,6.57e-07,54;UBERON:0005156,7.64e-07,59;UBERON:0000990,7.64e-07,59 | |||
|phase1_expression=0.363356758541113,1.49870366723688,0.281908808191942,0,1.34088328328186,0.872338524100369,0,0.631719873426831,0.522371256399677,0.491467873003018,2.09340350391728,0.873765488520689,2.37390280405608,0.495065411840187,0.662794751455832,1.34465029290355,1.20538905604795,0.730310090387373,0.487932798790507,0,0.408001382488506,0.313454721478088,0,0.136874425072884,0,0,0.0821005894499457,0,0,0,0,0.919421224478927,1.204823675113,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0.221533894583621,0,0.25618263945135,0.520237390239513,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0.255725123687061,0.361439152384566,0,2.02785126545153,0,0,0.472674085820339,0.665188192387692,0.790513071238134,0.196468613246569,1.09288586487763,15.9437310397305,0,0,0,0,0,0,0,0.860234595106124,0,0,1.67799774483962,0.825354125820202,0,0.775250277507987,0.71153252537342,0,0.805658634218294,0.760272105718513,1.46437234528902,0,0,0,0,0,0,0,0.183201743930407,0,0,6.97750483428055,2.48485975847659,0.379891534993739,0.132409180813219,0.573673241497627,0.709336764396714,0,0,1.2333377420858,0,0.269421344139376,0.490385709340376,0,0,0.468642863667593,1.24864030732128,0,0.896692083310806,0.469737994575059,0.323745888736263,0.280901613404497,1.02077085627447,2.33385202892359,0.206651562351531,1.18800285728205,0.247266929278557,0,0,0.505008341862199,0,0,0,0.30648779579902,0,0.226864366320042,0.717558542755448,0.213557388818567,0.423863802319124,2.70081986475962,0,0.257640540045629,0,0,0.0974370051611986,0.504867548488229,0.460249493211497,0.484938170456436,0.710019185033229,0.10075209822764,0.169560592310488,7.73043412653187,1.90922284413584,2.86804595389004,0.731842236777572,0.132529768321485,0.348581828608555,1.24393266018445,0.252320850875628,0.36497735907583,0,0.643240938192885,0,0.464367928031979,2.88751792667834,3.19428360107579,3.20310911148393,2.89213235860178,2.86764329104224,2.61455332910887,1.18635309555548,2.42696354688296,2.15843611637881,3.46272441251751,0,0,0,0,1.26755034821831,0,0.590789906681404,0,0.860919069801795,0.686271241194102,7.46301940778654,1.1240175325762,3.01586917234893,1.94435734832912,1.3032332212413,0,0,0.34779121492523,0.352226082707465,0,1.38895653772983,0.190254152234598,6.3216351836742,0.858486162094873,0,0,0,2.81201501960331,5.20744597416465,3.54437743105966,3.58234090811393,6.68458058582112,0.383382679165211,0,0,0,0,0,0.126995788584338,0,0,0,1.23392991243988,0.600686115687835,0,0.112131084345361,0.43596006883328,0.22001485746285,0.258543431515556,0,0,0.531876233169741,1.04007436911366,0.514414748524284,0,0.266422179016099,0.714889968290738,0,0,0.325736184293735,0,0,1.80863626235752,1.74306691720059,1.79951384127703,0,0,0,1.4377491329495,1.14861935834114,0,0.434343920002738,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.613457458595699,1.00034104211935,0.542530047399471,0.415941723061614,1.60586089917446,0.946214490203608,1.63997980989798,0,2.27407504055985,0,0,0.184369168541703,1.04260337361699,0,0,0,0,0.106727557803444,1.5156378572313,1.66435439510497,1.81434175997808,0.744323423456331,0.306923946576125,2.24528075546459,0.384417447767103,1.02341449813341,0.804269605718038,0,0,0.887808626565635,0.0821271560138091,0,0.697262270759755,0.604297247958111,14.0354529212299,6.90607417019222,0.68888668898764,2.1850940160806,3.2781103739856,0.451199612907412,1.23224539367064,0,0,0.633309773357254,1.13733384070897,0.510281115829547,0.431831832204279,0,0.541892875087706,1.00337954770971,0.509752546090077,2.49322802678617,1.34324852833307,0,0,0.512900250232778,0.656029291399411,0.325378394664303,0.206082023295445,0,0,0,1.30012049207304,3.21367859688319,0,0.770243085573222,0.460511024178389,0.137836572484531,0.214840489736547,0.290033387828457,0.255679882248303,0.0890320356467374,3.30569830721956,1.92190067365106,0.510450849978337,1.71968227454435,0.929691098594572,1.25924938732256,0,0.308033580176089,0,0,0.37064843820784,0,0.372158369359667,0.316379424718726,2.47819252100972,0.255897791311334,0,0.318203247925937,0,0.539617372749944,0.54907405947211,0.353437207037059,0,0,0,0.48763373908959,0.974853958525138,0,0.682499557039929,0.989838023675989,0,0,0.66343897524122,0,1.15755106853338,0,0,0.30982349809975,0,0,0,0,0.354761064070598,1.47775344708365,0.329294892959902,0.379473173765715,0,0.0962221127255121,0.670302275535787,1.08890984861323,0.282431402330337,3.44404298136984,11.7930032967338,8.86860307073351,5.05391480455311,0,0,0,0,0,0,0,0,0.854592569019785,0,5.88096518354476,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0,0,0.66866030566487,0.568272293612826,9.5497793895076,1.18785872333055,14.1293922965647,0,0,0.222617410045812,0.824019371133798,0,0,0,1.76352923497993,0.102268682502155,0,0.311039587661807,0.359473404589307,0.895105873378046,0,0,0,0,0,0,0,0.520855522170466,0.174919999992391,0,8.98968241455447,1.27126825146383,3.78220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| ||
|short_description=p@chr6:138413287..138413316,+ | |short_description=p@chr6:138413287..138413316,+ | ||
}} | }} |
Latest revision as of 20:06, 30 July 2015
Short description: | p@chr6:138413287..138413316, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:138413287..138413316, + |
Coexpression cluster: | C1043_keratoacanthoma_Prostate_tongue_amniotic_salivary_skin_esophagus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.20e-25 | 253 |
endo-epithelial cell | 6.87e-16 | 42 |
endodermal cell | 4.29e-13 | 58 |
epithelial cell of alimentary canal | 1.15e-12 | 20 |
general ecto-epithelial cell | 2.50e-09 | 14 |
ecto-epithelial cell | 1.93e-07 | 34 |
squamous epithelial cell | 4.74e-07 | 63 |
extraembryonic cell | 5.12e-07 | 19 |
transitional epithelial cell | 6.53e-07 | 4 |
urothelial cell | 6.53e-07 | 4 |
embryonic cell | 8.74e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
respiratory system | 7.26e-15 | 74 |
oral opening | 5.76e-13 | 22 |
orifice | 6.63e-12 | 36 |
larynx | 3.05e-11 | 9 |
endoderm-derived structure | 1.92e-10 | 160 |
endoderm | 1.92e-10 | 160 |
presumptive endoderm | 1.92e-10 | 160 |
mouth | 6.78e-10 | 29 |
stomodeum | 6.78e-10 | 29 |
surface structure | 8.66e-09 | 99 |
mouth mucosa | 1.70e-08 | 13 |
female organism | 3.67e-08 | 41 |
mucosa | 4.41e-08 | 20 |
upper respiratory tract | 1.07e-07 | 19 |
head | 1.11e-07 | 56 |
extraembryonic membrane | 1.65e-07 | 14 |
membranous layer | 1.65e-07 | 14 |
embryonic uterus | 1.95e-07 | 22 |
female reproductive organ | 2.64e-07 | 37 |
female reproductive system | 2.64e-07 | 37 |
internal female genitalia | 3.39e-07 | 22 |
anterior region of body | 5.89e-07 | 62 |
craniocervical region | 5.89e-07 | 62 |
respiratory tract | 6.57e-07 | 54 |
reproductive structure | 7.64e-07 | 59 |
reproductive system | 7.64e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.06e-07 | 106 |