FFCP PHASE1:Hg19::chr5:17186393..17186443,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:17186393..17186443,+ | |||
|coexpression_cluster_id=C41 | |coexpression_cluster_id=C41 | ||
|description=CAGE_peak_at_chr5:17186393..17186443,+ | |description=CAGE_peak_at_chr5:17186393..17186443,+ | ||
|id=chr5:17186393..17186443,+ | |id=chr5:17186393..17186443,+ | ||
|ontology_enrichment_celltype=CL:0000135!8.39e-13!3;CL:0000386!8.39e-13!3;CL:0000388!8.39e-13!3;CL:0002586!8.72e-13!3;CL:0000149!1.08e-09!4 | |ontology_enrichment_celltype=CL:0000135!8.39e-13!3;CL:0000386!8.39e-13!3;CL:0000388!8.39e-13!3;CL:0002586!8.72e-13!3;CL:0000149!1.08e-09!4 | ||
|ontology_enrichment_celltype_v019=CL:0002586;5.61e-30;3!CL:0000149;8.96e-23;4!CL:0002593;2.90e-12;2!CL:0000147;3.34e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,6.50e-30,3;CL:0000149,1.00e-22,4;CL:0002593,2.90e-12,2;CL:0000147,3.44e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0003056;8.31e-09;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000966!2.43e-13!5;UBERON:0005388!2.43e-13!5;UBERON:0001802!2.43e-13!5;UBERON:0000043!8.39e-13!3;UBERON:0001781!8.72e-13!3;UBERON:0001782!8.72e-13!3;UBERON:0005424!8.72e-13!3;UBERON:0001896!2.21e-12!3;UBERON:0005290!2.21e-12!3;UBERON:0010096!2.21e-12!3 | |ontology_enrichment_uberon=UBERON:0000966!2.43e-13!5;UBERON:0005388!2.43e-13!5;UBERON:0001802!2.43e-13!5;UBERON:0000043!8.39e-13!3;UBERON:0001781!8.72e-13!3;UBERON:0001782!8.72e-13!3;UBERON:0005424!8.72e-13!3;UBERON:0001896!2.21e-12!3;UBERON:0005290!2.21e-12!3;UBERON:0010096!2.21e-12!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;4.35e-40;5!UBERON:0005388;4.35e-40;5!UBERON:0001802;4.35e-40;5!UBERON:0001781;5.61e-30;3!UBERON:0001782;5.61e-30;3!UBERON:0000970;4.65e-18;20!UBERON:0002104;3.19e-17;21!UBERON:0000020;9.12e-16;23!UBERON:0001032;3.96e-15;24!UBERON:0004456;3.96e-15;24!UBERON:0002456;2.90e-12;2!UBERON:0000019;4.07e-11;19!UBERON:0000047;4.07e-11;19!UBERON:0004088;4.07e-11;19!UBERON:0010230;4.07e-11;19!UBERON:0001456;4.04e-10;21!UBERON:0007625;6.35e-09;11!UBERON:0001896;1.04e-08;3!UBERON:0005290;1.04e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.64e-33,6;UBERON:0005388,1.64e-33,6;UBERON:0001802,1.64e-33,6;UBERON:0001782,6.50e-30,3;UBERON:0005424,6.50e-30,3;UBERON:0001781,1.00e-22,4;UBERON:0000970,3.33e-17,21;UBERON:0002104,3.33e-17,21;UBERON:0000020,4.11e-15,24;UBERON:0001032,4.11e-15,24;UBERON:0004456,4.11e-15,24;UBERON:0002456,2.90e-12,2;UBERON:0000019,1.40e-10,20;UBERON:0000047,1.40e-10,20;UBERON:0010312,1.40e-10,20;UBERON:0004088,1.40e-10,20;UBERON:0010230,1.40e-10,20;UBERON:0003072,1.40e-10,20;UBERON:0004128,1.40e-10,20;UBERON:0003071,1.40e-10,20;UBERON:0001456,1.12e-09,22;UBERON:0007625,6.61e-09,11;UBERON:0001896,1.04e-08,3;UBERON:0005290,1.04e-08,3;UBERON:0010096,1.04e-08,3;UBERON:0005085,4.87e-07,31 | |||
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| ||
|short_description=p@chr5:17186393..17186443,+ | |short_description=p@chr5:17186393..17186443,+ | ||
}} | }} |
Latest revision as of 13:04, 30 July 2015
Short description: | p@chr5:17186393..17186443, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:17186393..17186443, + |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 6.50e-30 | 3 |
visual pigment cell | 1.00e-22 | 4 |
smooth muscle cell of the internal thoracic artery | 2.90e-12 | 2 |
pigment cell | 3.44e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
retina | 1.64e-33 | 6 |
photoreceptor array | 1.64e-33 | 6 |
posterior segment of eyeball | 1.64e-33 | 6 |
pigmented layer of retina | 6.50e-30 | 3 |
presumptive retinal pigmented epithelium | 6.50e-30 | 3 |
layer of retina | 1.00e-22 | 4 |
eye | 3.33e-17 | 21 |
visual system | 3.33e-17 | 21 |
sense organ | 4.11e-15 | 24 |
sensory system | 4.11e-15 | 24 |
entire sense organ system | 4.11e-15 | 24 |
internal thoracic artery | 2.90e-12 | 2 |
camera-type eye | 1.40e-10 | 20 |
simple eye | 1.40e-10 | 20 |
immature eye | 1.40e-10 | 20 |
ocular region | 1.40e-10 | 20 |
eyeball of camera-type eye | 1.40e-10 | 20 |
optic cup | 1.40e-10 | 20 |
optic vesicle | 1.40e-10 | 20 |
eye primordium | 1.40e-10 | 20 |
face | 1.12e-09 | 22 |
pigment epithelium of eye | 6.61e-09 | 11 |
medulla oblongata | 1.04e-08 | 3 |
myelencephalon | 1.04e-08 | 3 |
future myelencephalon | 1.04e-08 | 3 |
ectodermal placode | 4.87e-07 | 31 |