FFCP PHASE1:Hg19::chr4:66960590..66960627,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:66960590..66960627,- | |||
|description=CAGE_peak_at_chr4:66960590..66960627,- | |description=CAGE_peak_at_chr4:66960590..66960627,- | ||
|id=chr4:66960590..66960627,- | |id=chr4:66960590..66960627,- | ||
|ontology_enrichment_celltype=CL:0002593;8.28e-14;2!CL:0000054;1.21e-13;2!CL:0002596;1.21e-13;2!CL:0000137;1.21e-13;2!CL:0000092;1.21e-13;2 | |ontology_enrichment_celltype= | ||
| | |ontology_enrichment_celltype_v019=CL:0002593;8.28e-14;2!CL:0000054;1.21e-13;2!CL:0002596;1.21e-13;2!CL:0000137;1.21e-13;2!CL:0000092;1.21e-13;2 | ||
|ontology_enrichment_disease=DOID:0060085;7.62e-26;1!DOID:3165;7.62e-26;1!DOID:0060121;7.62e-26;1!DOID:2438;7.62e-26;1!DOID:4418;7.62e-26;1!DOID:3112;7.62e-26;1!DOID:201;2.19e-17;6!DOID:0060100;2.19e-17;6!DOID:4231;1.21e-13;2!DOID:200;1.21e-13;2!DOID:4305;1.21e-13;2!DOID:1907;1.21e-13;2!DOID:0060072;1.80e-07;4 | |ontology_enrichment_celltype_v019_2=CL:0002593,8.28e-14,2;CL:0002596,1.07e-13,2;CL:0000054,1.55e-13,2;CL:0000137,1.55e-13,2;CL:0000092,1.55e-13,2 | ||
|ontology_enrichment_uberon=UBERON:0002046;7.73e-21;5!UBERON:0002456;8.28e-14;2!UBERON:0005396;1.21e-13;2!UBERON:0000014;1.80e-07;4 | |ontology_enrichment_development_v019=UBERON:0007123;7.73e-21;5!UBERON:0009847;1.53e-09;3!UBERON:0003353;1.53e-09;3 | ||
|ontology_enrichment_disease=DOID:0050687!2.15e-07!143;DOID:305!2.28e-07!106;DOID:3112!9.81e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:0060085;7.62e-26;1!DOID:3165;7.62e-26;1!DOID:0060121;7.62e-26;1!DOID:2438;7.62e-26;1!DOID:4418;7.62e-26;1!DOID:3112;7.62e-26;1!DOID:201;2.19e-17;6!DOID:0060100;2.19e-17;6!DOID:4231;1.21e-13;2!DOID:200;1.21e-13;2!DOID:4305;1.21e-13;2!DOID:1907;1.21e-13;2!DOID:0060072;1.80e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,7.62e-26,1;DOID:0060085,1.26e-25,1;DOID:3165,1.26e-25,1;DOID:0060121,1.26e-25,1;DOID:2438,1.26e-25,1;DOID:4418,1.26e-25,1;DOID:201,2.81e-17,6;DOID:0060100,2.81e-17,6;DOID:4231,1.37e-13,2;DOID:1907,1.37e-13,2;DOID:200,1.55e-13,2;DOID:4305,1.55e-13,2;DOID:0060072,2.04e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0002046!5.45e-10!5;UBERON:0004117!5.45e-10!5;UBERON:0007689!5.45e-10!5;UBERON:0007123!5.45e-10!5;UBERON:0003091!5.45e-10!5;UBERON:0005910!7.33e-08!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0002046;7.73e-21;5!UBERON:0002456;8.28e-14;2!UBERON:0005396;1.21e-13;2!UBERON:0000014;1.80e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002046,7.35e-21,5;UBERON:0004117,7.35e-21,5;UBERON:0007689,7.35e-21,5;UBERON:0007123,7.35e-21,5;UBERON:0003091,7.35e-21,5;UBERON:0002456,8.28e-14,2;UBERON:0005396,1.07e-13,2;UBERON:0009722,4.83e-10,11;UBERON:0007690,4.83e-10,11;UBERON:0000014,2.04e-07,4 | |||
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|short_description=p@chr4:66960590..66960627,- | |short_description=p@chr4:66960590..66960627,- | ||
}} | }} |
Latest revision as of 06:06, 30 July 2015
Short description: | p@chr4:66960590..66960627, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:66960590..66960627, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the internal thoracic artery | 8.28e-14 | 2 |
smooth muscle cell of the carotid artery | 1.07e-13 | 2 |
bone matrix secreting cell | 1.55e-13 | 2 |
osteocyte | 1.55e-13 | 2 |
osteoclast | 1.55e-13 | 2 |
Ontology term | p-value | n |
---|---|---|
thyroid gland | 7.35e-21 | 5 |
pharyngeal pouch | 7.35e-21 | 5 |
thyroid diverticulum | 7.35e-21 | 5 |
pharyngeal pouch 2 | 7.35e-21 | 5 |
thyroid primordium | 7.35e-21 | 5 |
internal thoracic artery | 8.28e-14 | 2 |
carotid artery segment | 1.07e-13 | 2 |
entire pharyngeal arch endoderm | 4.83e-10 | 11 |
early pharyngeal endoderm | 4.83e-10 | 11 |
zone of skin | 2.04e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 7.62e-26 | 1 |
organ system benign neoplasm | 1.26e-25 | 1 |
skin benign neoplasm | 1.26e-25 | 1 |
integumentary system benign neoplasm | 1.26e-25 | 1 |
dermis tumor | 1.26e-25 | 1 |
cutaneous fibrous histiocytoma | 1.26e-25 | 1 |
connective tissue cancer | 2.81e-17 | 6 |
musculoskeletal system cancer | 2.81e-17 | 6 |
histiocytoma | 1.37e-13 | 2 |
malignant fibroxanthoma | 1.37e-13 | 2 |
giant cell tumor | 1.55e-13 | 2 |
bone giant cell tumor | 1.55e-13 | 2 |
benign neoplasm | 2.04e-07 | 4 |