FFCP PHASE1:Hg19::chr3:71527852..71527877,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:71527852..71527877,- | |||
|coexpression_cluster_id=C487 | |||
|description=CAGE_peak_at_chr3:71527852..71527877,- | |description=CAGE_peak_at_chr3:71527852..71527877,- | ||
|id=chr3:71527852..71527877,- | |id=chr3:71527852..71527877,- | ||
|ontology_enrichment_celltype=CL:0000624!2.04e-36!6;CL:0000791!6.45e-26!18;CL:0000789!6.45e-26!18;CL:0002420!6.45e-26!18;CL:0002419!6.45e-26!18;CL:0000790!6.45e-26!18;CL:0000898!3.25e-19!3;CL:0000084!3.06e-18!25;CL:0000827!3.06e-18!25;CL:0000815!2.88e-13!2;CL:0000792!2.88e-13!2;CL:0002677!2.88e-13!2;CL:0000838!4.99e-12!52;CL:0000542!9.21e-12!53;CL:0000051!9.21e-12!53;CL:0002087!7.99e-11!119;CL:0002031!6.11e-09!124;CL:0000738!1.08e-08!140;CL:0000810!1.12e-07!1;CL:0000895!1.12e-07!1;CL:0002436!1.12e-07!1;CL:0002427!1.12e-07!1;CL:0002428!1.12e-07!1;CL:0002429!1.12e-07!1;CL:0002433!1.12e-07!1;CL:0002431!1.12e-07!1;CL:0002432!1.12e-07!1;CL:0000037!2.15e-07!172;CL:0000566!2.15e-07!172;CL:0002032!7.35e-07!165;CL:0000837!7.35e-07!165;CL:0000988!8.55e-07!182 | |ontology_enrichment_celltype=CL:0000624!2.04e-36!6;CL:0000791!6.45e-26!18;CL:0000789!6.45e-26!18;CL:0002420!6.45e-26!18;CL:0002419!6.45e-26!18;CL:0000790!6.45e-26!18;CL:0000898!3.25e-19!3;CL:0000084!3.06e-18!25;CL:0000827!3.06e-18!25;CL:0000815!2.88e-13!2;CL:0000792!2.88e-13!2;CL:0002677!2.88e-13!2;CL:0000838!4.99e-12!52;CL:0000542!9.21e-12!53;CL:0000051!9.21e-12!53;CL:0002087!7.99e-11!119;CL:0002031!6.11e-09!124;CL:0000738!1.08e-08!140;CL:0000810!1.12e-07!1;CL:0000895!1.12e-07!1;CL:0002436!1.12e-07!1;CL:0002427!1.12e-07!1;CL:0002428!1.12e-07!1;CL:0002429!1.12e-07!1;CL:0002433!1.12e-07!1;CL:0002431!1.12e-07!1;CL:0002432!1.12e-07!1;CL:0000037!2.15e-07!172;CL:0000566!2.15e-07!172;CL:0002032!7.35e-07!165;CL:0000837!7.35e-07!165;CL:0000988!8.55e-07!182 | ||
|ontology_enrichment_celltype_v019=CL:0000895;3.05e-34;1!CL:0000624;6.41e-23;6!CL:0000791;3.39e-17;18!CL:0000789;3.39e-17;18!CL:0002419;3.39e-17;18!CL:0000084;1.30e-12;25!CL:0000898;2.19e-12;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000810,3.61e-34,1;CL:0000895,3.61e-34,1;CL:0002436,3.61e-34,1;CL:0002427,3.61e-34,1;CL:0002428,3.61e-34,1;CL:0002429,3.61e-34,1;CL:0002433,3.61e-34,1;CL:0002431,3.61e-34,1;CL:0002432,3.61e-34,1;CL:0000624,7.58e-23,6;CL:0000893,7.67e-18,2;CL:0002489,7.67e-18,2;CL:0000809,7.67e-18,2;CL:0000808,7.67e-18,2;CL:0000894,7.67e-18,2;CL:0000806,7.67e-18,2;CL:0000807,7.67e-18,2;CL:0000805,7.67e-18,2;CL:0002425,7.67e-18,2;CL:0000791,3.69e-17,18;CL:0000789,3.69e-17,18;CL:0002420,3.69e-17,18;CL:0002419,3.69e-17,18;CL:0000790,3.69e-17,18;CL:0000084,1.38e-12,25;CL:0000827,1.38e-12,25;CL:0000898,2.31e-12,3 | |||
|ontology_enrichment_development_v019=CL:0002427;3.05e-34;1!CL:0002425;7.05e-18;2!CL:0000790;3.39e-17;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0006834!6.20e-07!1 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.32e-09,4;UBERON:0005058,1.32e-09,4;UBERON:0009113,1.32e-09,4;UBERON:0003295,1.32e-09,4;UBERON:0005562,1.32e-09,4;UBERON:0003351,8.02e-07,6 | |||
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|short_description=p@chr3:71527852..71527877,- | |short_description=p@chr3:71527852..71527877,- | ||
}} | }} |
Latest revision as of 23:28, 29 July 2015
Short description: | p@chr3:71527852..71527877, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:71527852..71527877, - |
Coexpression cluster: | C487_CD4_Peripheral_CD8_Natural_CD14_immature_Basophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta thymocyte | 3.61e-34 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 3.61e-34 | 1 |
mature CD4 single-positive thymocyte | 3.61e-34 | 1 |
resting double-positive thymocyte | 3.61e-34 | 1 |
double-positive blast | 3.61e-34 | 1 |
CD69-positive double-positive thymocyte | 3.61e-34 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 3.61e-34 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 3.61e-34 | 1 |
CD24-positive, CD4 single-positive thymocyte | 3.61e-34 | 1 |
CD4-positive, alpha-beta T cell | 7.58e-23 | 6 |
thymocyte | 7.67e-18 | 2 |
double negative thymocyte | 7.67e-18 | 2 |
double-positive, alpha-beta thymocyte | 7.67e-18 | 2 |
DN4 thymocyte | 7.67e-18 | 2 |
DN1 thymic pro-T cell | 7.67e-18 | 2 |
DN2 thymocyte | 7.67e-18 | 2 |
DN3 thymocyte | 7.67e-18 | 2 |
immature single positive thymocyte | 7.67e-18 | 2 |
early T lineage precursor | 7.67e-18 | 2 |
mature alpha-beta T cell | 3.69e-17 | 18 |
alpha-beta T cell | 3.69e-17 | 18 |
immature T cell | 3.69e-17 | 18 |
mature T cell | 3.69e-17 | 18 |
immature alpha-beta T cell | 3.69e-17 | 18 |
T cell | 1.38e-12 | 25 |
pro-T cell | 1.38e-12 | 25 |
naive T cell | 2.31e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.32e-09 | 4 |
hemolymphoid system gland | 1.32e-09 | 4 |
thymic region | 1.32e-09 | 4 |
pharyngeal gland | 1.32e-09 | 4 |
thymus primordium | 1.32e-09 | 4 |
pharyngeal epithelium | 8.02e-07 | 6 |