FFCP PHASE1:Hg19::chr3:5740617..5740629,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:5740617..5740629,+ | |||
|coexpression_cluster_id=C2745 | |||
|description=CAGE_peak_at_chr3:5740617..5740629,+ | |description=CAGE_peak_at_chr3:5740617..5740629,+ | ||
|id=chr3:5740617..5740629,+ | |id=chr3:5740617..5740629,+ | ||
|ontology_enrichment_celltype=CL:0002541!1.37e-19!3;CL:0002178!7.36e-10!3;CL:1001319!7.26e-08!1;CL:1000600!7.26e-08!1;CL:0000066!9.24e-07!254 | |ontology_enrichment_celltype=CL:0002541!1.37e-19!3;CL:0002178!7.36e-10!3;CL:1001319!7.26e-08!1;CL:1000600!7.26e-08!1;CL:0000066!9.24e-07!254 | ||
|ontology_enrichment_celltype_v019=CL:0002178;3.11e-23;3!CL:1001319;1.12e-17;1!CL:1000600;1.12e-17;1!CL:1000415;1.86e-09;2!CL:0000322;6.69e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,2.63e-23,3;CL:1001319,1.03e-17,1;CL:1000600,1.03e-17,1;CL:1000415,1.86e-09,2;CL:0000066,5.04e-07,253;CL:0000322,6.50e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:299!9.16e-20!25;DOID:305!8.63e-18!106;DOID:3493!2.22e-14!2;DOID:4468!4.26e-14!2;DOID:0050687!3.57e-12!143;DOID:3111!6.80e-08!1;DOID:3603!6.80e-08!1 | |||
|ontology_enrichment_disease_v019=DOID:299;7.73e-42;25!DOID:3493;1.69e-34;2!DOID:4468;9.92e-34;2!DOID:3111;6.78e-18;1!DOID:3603;6.78e-18;1!DOID:3910;9.87e-10;2!DOID:305;7.54e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:299,8.16e-42,25;DOID:3493,1.84e-34,2;DOID:4468,9.92e-34,2;DOID:305,4.45e-18,106;DOID:3111,8.72e-18,1;DOID:3603,8.72e-18,1;DOID:0050687,3.50e-13,143;DOID:3910,9.46e-10,2;DOID:162,1.32e-07,235;DOID:14566,1.99e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0000476!1.37e-19!3;UBERON:0000920!1.37e-19!3;UBERON:0003124!1.34e-14!7;UBERON:0001255!1.12e-13!2;UBERON:0001556!1.12e-13!2;UBERON:0005631!4.56e-11!14;UBERON:0000158!4.56e-11!14;UBERON:0000162!4.77e-11!14;UBERON:0001353!4.77e-11!14;UBERON:0000163!4.77e-11!14;UBERON:0006866!4.77e-11!14;UBERON:0000164!4.77e-11!14;UBERON:0000931!4.77e-11!14;UBERON:0004122!2.68e-10!15;UBERON:0005911!1.07e-08!82;UBERON:0002294!1.52e-08!7;UBERON:0001173!1.52e-08!7;UBERON:0004912!1.52e-08!7;UBERON:0001046!4.41e-08!19;UBERON:0000077!7.23e-08!130;UBERON:0004645!7.26e-08!1;UBERON:0001256!7.26e-08!1;UBERON:0001259!7.26e-08!1;UBERON:0004913!1.48e-07!1;UBERON:0003703!1.48e-07!1;UBERON:0001174!1.48e-07!1;UBERON:0004914!1.48e-07!1;UBERON:0004119!3.40e-07!169;UBERON:0000925!3.40e-07!169;UBERON:0006595!3.40e-07!169;UBERON:0002394!5.22e-07!4;UBERON:0003928!5.22e-07!4 | |ontology_enrichment_uberon=UBERON:0000476!1.37e-19!3;UBERON:0000920!1.37e-19!3;UBERON:0003124!1.34e-14!7;UBERON:0001255!1.12e-13!2;UBERON:0001556!1.12e-13!2;UBERON:0005631!4.56e-11!14;UBERON:0000158!4.56e-11!14;UBERON:0000162!4.77e-11!14;UBERON:0001353!4.77e-11!14;UBERON:0000163!4.77e-11!14;UBERON:0006866!4.77e-11!14;UBERON:0000164!4.77e-11!14;UBERON:0000931!4.77e-11!14;UBERON:0004122!2.68e-10!15;UBERON:0005911!1.07e-08!82;UBERON:0002294!1.52e-08!7;UBERON:0001173!1.52e-08!7;UBERON:0004912!1.52e-08!7;UBERON:0001046!4.41e-08!19;UBERON:0000077!7.23e-08!130;UBERON:0004645!7.26e-08!1;UBERON:0001256!7.26e-08!1;UBERON:0001259!7.26e-08!1;UBERON:0004913!1.48e-07!1;UBERON:0003703!1.48e-07!1;UBERON:0001174!1.48e-07!1;UBERON:0004914!1.48e-07!1;UBERON:0004119!3.40e-07!169;UBERON:0000925!3.40e-07!169;UBERON:0006595!3.40e-07!169;UBERON:0002394!5.22e-07!4;UBERON:0003928!5.22e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0004645;1.12e-17;1!UBERON:0001256;1.12e-17;1!UBERON:0001259;1.12e-17;1!UBERON:0000945;2.33e-14;5!UBERON:0010039;2.33e-14;5!UBERON:0004903;9.87e-10;2!UBERON:0002173;9.87e-10;2!UBERON:0002186;9.87e-10;2!UBERON:0001255;1.64e-09;2!UBERON:0001556;1.64e-09;2!UBERON:0004821;6.69e-07;3!UBERON:0007499;6.69e-07;3!UBERON:0003215;6.69e-07;3!UBERON:0010368;6.69e-07;3!UBERON:0009911;6.69e-07;3!UBERON:0002299;6.69e-07;3!UBERON:0006524;6.69e-07;3!UBERON:0008874;6.69e-07;3!UBERON:0002169;6.69e-07;3!UBERON:0004894;6.69e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,1.03e-17,1;UBERON:0001256,1.03e-17,1;UBERON:0001259,1.03e-17,1;UBERON:0004903,9.46e-10,2;UBERON:0002173,9.46e-10,2;UBERON:0002186,9.46e-10,2;UBERON:0001255,1.57e-09,2;UBERON:0001556,1.57e-09,2;UBERON:0000945,2.35e-09,8;UBERON:0010039,2.35e-09,8;UBERON:0004821,6.50e-07,3;UBERON:0003215,6.50e-07,3;UBERON:0010368,6.50e-07,3;UBERON:0009911,6.50e-07,3;UBERON:0002299,6.50e-07,3;UBERON:0006524,6.50e-07,3;UBERON:0008874,6.50e-07,3;UBERON:0002169,6.50e-07,3;UBERON:0004894,6.50e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.9539891722521,0,0,0,0,0.47748896947538,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0.394573622547734,0,0,0,0,0,0,0,0,0,11.94992156376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.957003479195758,0.274792780205587,1.5991043280559,0,0,0,0,0,0,0,0,4.64195741961659,7.83517479163909,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.76746455182208,0,0,7.92497294347583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.75296524548339,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.18461219419332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443568258651136,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443511850813194,0,0,0,0,0,0.556157009460346,0.78493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.8206852759017,11.3383670233511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705789743431384,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,4.88419611665847,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.9539891722521,0,0,0,0,0.47748896947538,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0.394573622547734,0,0,0,0,0,0,0,0,0,11.94992156376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.957003479195758,0.274792780205587,1.5991043280559,0,0,0,0,0,0,0,0,4.64195741961659,7.83517479163909,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.76746455182208,0,0,7.92497294347583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.75296524548339,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.18461219419332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443568258651136,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443511850813194,0,0,0,0,0,0.556157009460346,0.78493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.8206852759017,11.3383670233511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705789743431384,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,4.88419611665847,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:5740617..5740629,+ | |short_description=p@chr3:5740617..5740629,+ | ||
}} | }} |
Latest revision as of 22:49, 29 July 2015
Short description: | p@chr3:5740617..5740629, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:5740617..5740629, + |
Coexpression cluster: | C2745_bronchioalveolar_signet_mucinous_adenocarcinoma_giant_gall_smallcell |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 2.63e-23 | 3 |
bladder cell | 1.03e-17 | 1 |
lower urinary tract cell | 1.03e-17 | 1 |
epithelial cell of gall bladder | 1.86e-09 | 2 |
epithelial cell | 5.04e-07 | 253 |
pneumocyte | 6.50e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 1.03e-17 | 1 |
wall of urinary bladder | 1.03e-17 | 1 |
mucosa of urinary bladder | 1.03e-17 | 1 |
bronchoalveolar duct junction | 9.46e-10 | 2 |
alveolar duct | 9.46e-10 | 2 |
bronchiole | 9.46e-10 | 2 |
urinary bladder | 1.57e-09 | 2 |
lower urinary tract | 1.57e-09 | 2 |
stomach | 2.35e-09 | 8 |
food storage organ | 2.35e-09 | 8 |
pulmonary alveolus epithelium | 6.50e-07 | 3 |
alveolus | 6.50e-07 | 3 |
pulmonary lobule | 6.50e-07 | 3 |
lobule | 6.50e-07 | 3 |
alveolus of lung | 6.50e-07 | 3 |
alveolar system | 6.50e-07 | 3 |
pulmonary acinus | 6.50e-07 | 3 |
alveolar sac | 6.50e-07 | 3 |
alveolar wall | 6.50e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 8.16e-42 | 25 |
signet ring cell adenocarcinoma | 1.84e-34 | 2 |
clear cell adenocarcinoma | 9.92e-34 | 2 |
carcinoma | 4.45e-18 | 106 |
cystadenocarcinoma | 8.72e-18 | 1 |
mucinous cystadenocarcinoma | 8.72e-18 | 1 |
cell type cancer | 3.50e-13 | 143 |
lung adenocarcinoma | 9.46e-10 | 2 |
cancer | 1.32e-07 | 235 |
disease of cellular proliferation | 1.99e-07 | 239 |