FFCP PHASE1:Hg19::chr3:194868639..194868654,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr3:194868639..194868654,+
|short_description=p1@ENST00000426468
|description=CAGE_peak_1_at_ENST00000426468_5end
|association_with_transcript=19bp_to_ENST0000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=19bp_to_ENST00000426468_5end | |||
|cluster_id=chr3:194868639..194868654,+ | |||
|coexpression_cluster_id=C357 | |||
|description=CAGE_peak_1_at_ENST00000426468_5end | |||
|id=chr3:194868639..194868654,+ | |||
|ontology_enrichment_celltype=CL:0002139!4.25e-37!24;CL:0000115!8.02e-26!35;CL:0000071!3.70e-24!18;CL:0002546!3.70e-24!18;CL:0000213!1.95e-21!57;CL:0000215!1.95e-21!57;CL:0002078!3.29e-19!44;CL:0005020!4.34e-15!6;CL:0002138!4.34e-15!6;CL:0005022!4.34e-15!6;CL:1000413!8.63e-13!9;CL:0000838!6.04e-10!52;CL:0000076!6.43e-10!62;CL:0000542!1.14e-09!53;CL:0000051!1.14e-09!53;CL:0000624!3.79e-09!6;CL:0002144!2.35e-08!3;CL:0002618!2.52e-08!3;CL:0000222!7.09e-08!119;CL:0000898!1.48e-07!3;CL:0002544!4.62e-07!6;CL:0000945!5.79e-07!24;CL:0000826!5.79e-07!24;CL:0002543!6.93e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.25e-90;24!CL:0002138;6.45e-52;6!CL:0000115;3.29e-51;36!CL:0000071;2.47e-47;18!CL:0002078;5.89e-30;45!CL:0002618;8.98e-27;3!CL:1000413;2.59e-24;9!CL:0002544;9.79e-24;6!CL:0000213;1.98e-23;58!CL:0000215;1.98e-23;58!CL:0002543;1.06e-13;6!CL:0002144;3.97e-13;3!CL:0000076;3.91e-09;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.37e-90,24;CL:0000115,1.44e-59,36;CL:0005020,5.43e-52,6;CL:0002138,5.43e-52,6;CL:0005022,5.43e-52,6;CL:0000071,2.95e-47,18;CL:0002546,2.95e-47,18;CL:0002078,3.80e-47,45;CL:0000213,9.46e-41,58;CL:0000215,9.46e-41,58;CL:0002618,1.12e-26,3;CL:1000413,2.79e-24,9;CL:0002544,8.73e-24,6;CL:0000222,4.51e-18,121;CL:0000076,4.49e-15,63;CL:0002543,1.18e-13,6;CL:0002144,3.85e-13,3;CL:0002321,3.81e-07,250;CL:0000066,4.18e-07,253 | |||
|ontology_enrichment_development_v019=CL:0005022;6.45e-52;6!CL:0002546;2.47e-47;18!CL:0000222;8.79e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!3.70e-24!18;UBERON:0004638!3.70e-24!18;UBERON:0004852!3.70e-24!18;UBERON:0000487!5.10e-19!22;UBERON:0006914!2.98e-16!25;UBERON:0003915!8.63e-13!9;UBERON:0004700!8.63e-13!9;UBERON:0001917!8.63e-13!9;UBERON:0002465!3.25e-11!10;UBERON:0001473!4.57e-11!8;UBERON:0004536!4.57e-11!8;UBERON:0006558!4.57e-11!8;UBERON:0000055!4.35e-10!69;UBERON:0001915!2.35e-08!3;UBERON:0001982!2.35e-08!3;UBERON:0002049!4.18e-08!79;UBERON:0007798!4.18e-08!79;UBERON:0004535!1.70e-07!110;UBERON:0001009!3.97e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.47e-47;18!UBERON:0001986;2.47e-47;18!UBERON:0004852;2.47e-47;18!UBERON:0001473;7.05e-39;8!UBERON:0004536;7.05e-39;8!UBERON:0006558;7.05e-39;8!UBERON:0000487;1.79e-38;22!UBERON:0006914;1.10e-33;25!UBERON:0002465;4.80e-31;10!UBERON:0003915;2.59e-24;9!UBERON:0004700;2.59e-24;9!UBERON:0001917;2.59e-24;9!UBERON:0000490;9.18e-22;33!UBERON:0000055;1.78e-21;65!UBERON:0002066;2.52e-16;5!UBERON:0010523;3.97e-13;3!UBERON:0001915;3.97e-13;3!UBERON:0001982;3.97e-13;3!UBERON:0002049;1.05e-12;75!UBERON:0007798;1.05e-12;75!UBERON:0002405;3.01e-11;27!UBERON:0007500;9.44e-11;56!UBERON:0001981;9.44e-11;56!UBERON:0004537;9.44e-11;56!UBERON:0001638;2.60e-09;9!UBERON:0010260;2.60e-09;9!UBERON:0003920;2.60e-09;9!UBERON:0004582;2.60e-09;9!UBERON:0004535;4.61e-08;109!UBERON:0003914;4.07e-07;74!UBERON:0000947;6.55e-07;21!UBERON:0010191;6.55e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,2.95e-47,18;UBERON:0001986,2.95e-47,18;UBERON:0004852,2.95e-47,18;UBERON:0001473,6.20e-39,8;UBERON:0004536,6.20e-39,8;UBERON:0006558,6.20e-39,8;UBERON:0000487,2.07e-38,22;UBERON:0006914,1.25e-33,25;UBERON:0002465,4.33e-31,10;UBERON:0000055,2.55e-30,68;UBERON:0002049,4.31e-26,78;UBERON:0007798,4.31e-26,78;UBERON:0003915,2.79e-24,9;UBERON:0004700,2.79e-24,9;UBERON:0001917,2.79e-24,9;UBERON:0004535,6.65e-18,109;UBERON:0001009,2.38e-17,112;UBERON:0002066,2.87e-16,5;UBERON:0007500,2.19e-13,59;UBERON:0001981,2.19e-13,59;UBERON:0004537,2.19e-13,59;UBERON:0006965,2.19e-13,59;UBERON:0010523,3.85e-13,3;UBERON:0001915,3.85e-13,3;UBERON:0001982,3.85e-13,3;UBERON:0001638,2.79e-09,9;UBERON:0010260,2.79e-09,9;UBERON:0003920,2.79e-09,9;UBERON:0004582,2.79e-09,9;UBERON:0004872,4.56e-09,83;UBERON:0000947,6.35e-07,21;UBERON:0010191,6.35e-07,21 | |||
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| ||
|short_description=p1@ENST00000426468 | |||
}} | }} |
Latest revision as of 19:41, 29 July 2015
Short description: | p1@ENST00000426468 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000426468_5end |
Coexpression cluster: | C357_Endothelial_Lymphatic_Renal_Hepatic_seminal_breast_heart |
Association with transcript: | 19bp_to_ENST00000426468_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.37e-90 | 24 |
endothelial cell | 1.44e-59 | 36 |
lymphangioblast | 5.43e-52 | 6 |
endothelial cell of lymphatic vessel | 5.43e-52 | 6 |
vascular lymphangioblast | 5.43e-52 | 6 |
blood vessel endothelial cell | 2.95e-47 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.95e-47 | 18 |
meso-epithelial cell | 3.80e-47 | 45 |
lining cell | 9.46e-41 | 58 |
barrier cell | 9.46e-41 | 58 |
endothelial cell of umbilical vein | 1.12e-26 | 3 |
endothelial cell of artery | 2.79e-24 | 9 |
aortic endothelial cell | 8.73e-24 | 6 |
mesodermal cell | 4.51e-18 | 121 |
squamous epithelial cell | 4.49e-15 | 63 |
vein endothelial cell | 1.18e-13 | 6 |
capillary endothelial cell | 3.85e-13 | 3 |
embryonic cell | 3.81e-07 | 250 |
epithelial cell | 4.18e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 2.95e-47 | 18 |
endothelium | 2.95e-47 | 18 |
cardiovascular system endothelium | 2.95e-47 | 18 |
lymphatic vessel | 6.20e-39 | 8 |
lymph vasculature | 6.20e-39 | 8 |
lymphatic part of lymphoid system | 6.20e-39 | 8 |
simple squamous epithelium | 2.07e-38 | 22 |
squamous epithelium | 1.25e-33 | 25 |
lymphoid system | 4.33e-31 | 10 |
vessel | 2.55e-30 | 68 |
vasculature | 4.31e-26 | 78 |
vascular system | 4.31e-26 | 78 |
endothelial tube | 2.79e-24 | 9 |
arterial system endothelium | 2.79e-24 | 9 |
endothelium of artery | 2.79e-24 | 9 |
cardiovascular system | 6.65e-18 | 109 |
circulatory system | 2.38e-17 | 112 |
umbilical vein | 2.87e-16 | 5 |
epithelial tube open at both ends | 2.19e-13 | 59 |
blood vessel | 2.19e-13 | 59 |
blood vasculature | 2.19e-13 | 59 |
vascular cord | 2.19e-13 | 59 |
microcirculatory vessel | 3.85e-13 | 3 |
endothelium of capillary | 3.85e-13 | 3 |
capillary | 3.85e-13 | 3 |
vein | 2.79e-09 | 9 |
umbilical blood vessel | 2.79e-09 | 9 |
venous blood vessel | 2.79e-09 | 9 |
venous system | 2.79e-09 | 9 |
splanchnic layer of lateral plate mesoderm | 4.56e-09 | 83 |
aorta | 6.35e-07 | 21 |
aortic system | 6.35e-07 | 21 |