FFCP PHASE1:Hg19::chr3:149103836..149103848,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:149103836..149103848,+ | |||
|coexpression_cluster_id=C55 | |||
|description=CAGE_peak_at_chr3:149103836..149103848,+ | |description=CAGE_peak_at_chr3:149103836..149103848,+ | ||
|id=chr3:149103836..149103848,+ | |id=chr3:149103836..149103848,+ | ||
|ontology_enrichment_celltype=CL:0002150!1.85e-13!3;CL:0000861!1.85e-13!3;CL:0000066!2.71e-13!254;CL:0000223!1.36e-10!59;CL:0000322!3.59e-07!3 | |ontology_enrichment_celltype=CL:0002150!1.85e-13!3;CL:0000861!1.85e-13!3;CL:0000066!2.71e-13!254;CL:0000223!1.36e-10!59;CL:0000322!3.59e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000182;4.42e-22;12!CL:0000322;1.04e-10;3!CL:0000082;6.77e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,4.42e-22,12;CL:0000322,1.20e-10,3;CL:0000223,2.52e-08,58;CL:0000082,7.18e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0004161;5.23e-24;11!UBERON:0001041;6.43e-24;30!UBERON:0009497;1.90e-20;13!UBERON:0003104;7.89e-09;31 | |||
|ontology_enrichment_disease=DOID:305!2.99e-34!106;DOID:0050687!3.11e-29!143;DOID:162!1.78e-18!235;DOID:14566!6.28e-18!239;DOID:299!1.88e-13!25;DOID:4074!2.12e-10!2;DOID:4905!2.12e-10!2;DOID:3498!2.12e-10!2;DOID:3910!2.32e-10!2;DOID:3908!4.24e-09!5 | |ontology_enrichment_disease=DOID:305!2.99e-34!106;DOID:0050687!3.11e-29!143;DOID:162!1.78e-18!235;DOID:14566!6.28e-18!239;DOID:299!1.88e-13!25;DOID:4074!2.12e-10!2;DOID:4905!2.12e-10!2;DOID:3498!2.12e-10!2;DOID:3910!2.32e-10!2;DOID:3908!4.24e-09!5 | ||
|ontology_enrichment_disease_v019=DOID:3908;2.02e-23;5!DOID:3910;2.21e-15;2!DOID:4468;2.21e-15;2!DOID:3905;1.69e-13;9!DOID:7;9.77e-12;39!DOID:4556;1.04e-10;3!DOID:1324;1.71e-08;15!DOID:305;2.08e-08;106!DOID:5093;2.35e-08;4!DOID:1612;2.35e-08;4!DOID:0050615;5.09e-08;16 | |||
|ontology_enrichment_disease_v019_2=DOID:3908,2.54e-23,5;DOID:4468,2.05e-15,2;DOID:3910,2.74e-15,2;DOID:3905,1.91e-13,9;DOID:305,2.72e-13,106;DOID:7,3.41e-12,39;DOID:4556,1.09e-10,3;DOID:0050687,6.71e-10,143;DOID:1324,1.85e-08,15;DOID:5093,2.11e-08,4;DOID:1612,2.11e-08,4;DOID:0050615,5.46e-08,16 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.02e-17!9;UBERON:0004921!7.95e-12!129;UBERON:0004185!7.95e-12!129;UBERON:0001041!6.16e-11!98;UBERON:0000077!1.54e-10!130;UBERON:0004903!2.32e-10!2;UBERON:0002173!2.32e-10!2;UBERON:0002186!2.32e-10!2;UBERON:0008947!4.72e-10!38;UBERON:0003258!4.72e-10!38;UBERON:0001007!4.98e-09!155;UBERON:0001555!4.98e-09!155;UBERON:0007026!4.98e-09!155;UBERON:0007499!3.52e-08!25;UBERON:0000072!5.54e-08!46;UBERON:0001557!6.20e-08!19;UBERON:0004119!6.89e-08!169;UBERON:0000925!6.89e-08!169;UBERON:0006595!6.89e-08!169;UBERON:0009856!7.92e-08!26;UBERON:0004821!3.59e-07!3;UBERON:0003215!3.59e-07!3;UBERON:0002299!3.59e-07!3;UBERON:0006524!3.59e-07!3;UBERON:0008874!3.59e-07!3;UBERON:0002169!3.59e-07!3;UBERON:0004894!3.59e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;2.21e-15;2!UBERON:0002173;2.21e-15;2!UBERON:0002186;2.21e-15;2!UBERON:0002107;3.02e-14;19!UBERON:0006925;3.02e-14;19!UBERON:0002423;5.28e-11;25!UBERON:0004821;1.04e-10;3!UBERON:0007499;1.04e-10;3!UBERON:0003215;1.04e-10;3!UBERON:0010368;1.04e-10;3!UBERON:0009911;1.04e-10;3!UBERON:0002299;1.04e-10;3!UBERON:0006524;1.04e-10;3!UBERON:0008874;1.04e-10;3!UBERON:0002169;1.04e-10;3!UBERON:0004894;1.04e-10;3!UBERON:0002365;2.26e-08;31!UBERON:0002330;2.26e-08;31!UBERON:0009856;2.35e-08;4!UBERON:0002368;6.41e-08;33!UBERON:0004802;6.77e-07;19!UBERON:0000115;6.77e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007499,1.19e-18,25;UBERON:0009856,5.90e-18,26;UBERON:0004903,2.74e-15,2;UBERON:0002173,2.74e-15,2;UBERON:0002186,2.74e-15,2;UBERON:0002107,3.02e-14,19;UBERON:0006925,3.02e-14,19;UBERON:0008836,3.02e-14,19;UBERON:0008835,2.09e-12,22;UBERON:0003894,2.09e-12,22;UBERON:0009854,6.73e-12,23;UBERON:0009497,5.28e-11,25;UBERON:0000015,5.28e-11,25;UBERON:0002423,5.28e-11,25;UBERON:0006235,5.28e-11,25;UBERON:0004161,5.28e-11,25;UBERON:0004821,1.20e-10,3;UBERON:0003215,1.20e-10,3;UBERON:0010368,1.20e-10,3;UBERON:0009911,1.20e-10,3;UBERON:0002299,1.20e-10,3;UBERON:0006524,1.20e-10,3;UBERON:0008874,1.20e-10,3;UBERON:0002169,1.20e-10,3;UBERON:0004894,1.20e-10,3;UBERON:0009569,2.45e-09,112;UBERON:0002365,5.24e-09,31;UBERON:0002330,5.24e-09,31;UBERON:0005911,5.70e-09,82;UBERON:0001041,1.81e-08,87;UBERON:0002368,4.72e-08,35;UBERON:0005177,2.50e-07,101;UBERON:0004802,7.18e-07,19;UBERON:0000115,7.18e-07,19 | |||
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| ||
|short_description=p@chr3:149103836..149103848,+ | |short_description=p@chr3:149103836..149103848,+ | ||
}} | }} |
Latest revision as of 16:52, 29 July 2015
Short description: | p@chr3:149103836..149103848, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:149103836..149103848, + |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 4.42e-22 | 12 |
pneumocyte | 1.20e-10 | 3 |
endodermal cell | 2.52e-08 | 58 |
epithelial cell of lung | 7.18e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
epithelial sac | 1.19e-18 | 25 |
sac | 5.90e-18 | 26 |
bronchoalveolar duct junction | 2.74e-15 | 2 |
alveolar duct | 2.74e-15 | 2 |
bronchiole | 2.74e-15 | 2 |
liver | 3.02e-14 | 19 |
digestive gland | 3.02e-14 | 19 |
liver bud | 3.02e-14 | 19 |
hepatic diverticulum | 2.09e-12 | 22 |
liver primordium | 2.09e-12 | 22 |
digestive tract diverticulum | 6.73e-12 | 23 |
epithelium of foregut-midgut junction | 5.28e-11 | 25 |
anatomical boundary | 5.28e-11 | 25 |
hepatobiliary system | 5.28e-11 | 25 |
foregut-midgut junction | 5.28e-11 | 25 |
septum transversum | 5.28e-11 | 25 |
pulmonary alveolus epithelium | 1.20e-10 | 3 |
alveolus | 1.20e-10 | 3 |
pulmonary lobule | 1.20e-10 | 3 |
lobule | 1.20e-10 | 3 |
alveolus of lung | 1.20e-10 | 3 |
alveolar system | 1.20e-10 | 3 |
pulmonary acinus | 1.20e-10 | 3 |
alveolar sac | 1.20e-10 | 3 |
alveolar wall | 1.20e-10 | 3 |
subdivision of trunk | 2.45e-09 | 112 |
exocrine gland | 5.24e-09 | 31 |
exocrine system | 5.24e-09 | 31 |
endo-epithelium | 5.70e-09 | 82 |
foregut | 1.81e-08 | 87 |
endocrine gland | 4.72e-08 | 35 |
trunk region element | 2.50e-07 | 101 |
respiratory tract epithelium | 7.18e-07 | 19 |
lung epithelium | 7.18e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
non-small cell lung carcinoma | 2.54e-23 | 5 |
clear cell adenocarcinoma | 2.05e-15 | 2 |
lung adenocarcinoma | 2.74e-15 | 2 |
lung carcinoma | 1.91e-13 | 9 |
carcinoma | 2.72e-13 | 106 |
disease of anatomical entity | 3.41e-12 | 39 |
lung large cell carcinoma | 1.09e-10 | 3 |
cell type cancer | 6.71e-10 | 143 |
lung cancer | 1.85e-08 | 15 |
thoracic cancer | 2.11e-08 | 4 |
breast cancer | 2.11e-08 | 4 |
respiratory system cancer | 5.46e-08 | 16 |