FFCP PHASE1:Hg19::chr3:13612343..13612379,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr3:13612343..13612379,+ | |||
|coexpression_cluster_id=C943 | |||
|description=CAGE_peak_at_chr3:13612343..13612379,+ | |||
|id=chr3:13612343..13612379,+ | |||
|ontology_enrichment_celltype=CL:0000057!3.74e-20!75;CL:0000055!6.39e-17!180;CL:0000136!1.70e-12!15;CL:0002334!5.00e-10!12;CL:0002620!1.33e-08!23;CL:0002494!3.77e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002334;2.60e-15;12!CL:0002620;2.61e-13;23!CL:0000136;4.60e-12;13!CL:0000057;9.93e-09;73!CL:0002570;1.89e-08;8!CL:1000306;7.04e-08;4!CL:0002547;7.04e-08;4!CL:0000135;1.86e-07;3!CL:0000388;1.86e-07;3!CL:0002615;2.02e-07;3!CL:0002580;3.02e-07;3!CL:0002579;4.05e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.22e-26,76;CL:0000136,2.64e-15,15;CL:0002334,3.01e-15,12;CL:0002620,1.54e-13,23;CL:0002320,2.51e-10,361;CL:0000134,2.77e-10,354;CL:0000048,6.80e-09,427;CL:0000219,8.46e-09,386;CL:0000723,1.65e-08,433;CL:0002570,2.09e-08,8;CL:0000034,5.11e-08,441;CL:1000306,1.12e-07,4;CL:0002547,1.12e-07,4;CL:0000135,1.99e-07,3;CL:0000388,1.99e-07,3;CL:0002615,2.08e-07,3;CL:0002580,3.33e-07,3;CL:0002579,5.08e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;7.58e-10;5!DOID:450;7.58e-10;5!DOID:66;7.58e-10;5!DOID:423;7.58e-10;5!DOID:0080000;7.58e-10;5!DOID:11722;7.58e-10;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,6.44e-10,5;DOID:450,6.44e-10,5;DOID:66,6.44e-10,5;DOID:423,6.44e-10,5;DOID:0080000,6.44e-10,5;DOID:11722,6.44e-10,5 | |||
|ontology_enrichment_uberon=UBERON:0000948!2.32e-11!24;UBERON:0005498!2.32e-11!24;UBERON:0004140!2.32e-11!24;UBERON:0009881!2.32e-11!24;UBERON:0004141!2.32e-11!24;UBERON:0003084!2.32e-11!24;UBERON:0007005!2.32e-11!24;UBERON:0004139!2.32e-11!24;UBERON:0004291!2.32e-11!24;UBERON:0001013!2.06e-10!14;UBERON:0007100!3.28e-10!27;UBERON:0003102!4.50e-08!95;UBERON:0002199!4.75e-08!45;UBERON:0002416!4.75e-08!45;UBERON:0003688!8.21e-07!6;UBERON:0002358!8.21e-07!6;UBERON:0003684!8.21e-07!6;UBERON:0001178!8.21e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.54e-18;14!UBERON:0004457;1.17e-14;9!UBERON:0000042;1.17e-14;9!UBERON:0003688;6.99e-13;6!UBERON:0002358;6.99e-13;6!UBERON:0003684;6.99e-13;6!UBERON:0001178;6.99e-13;6!UBERON:0000948;5.43e-10;22!UBERON:0002072;1.38e-09;5!UBERON:0007100;1.89e-08;25!UBERON:0002199;4.89e-08;46!UBERON:0002416;4.89e-08;46!UBERON:0004797;7.04e-08;4!UBERON:0000415;7.04e-08;4!UBERON:0007240;7.04e-08;4!UBERON:0005742;7.04e-08;4!UBERON:0005734;7.04e-08;4!UBERON:0004664;7.04e-08;4!UBERON:0004663;7.04e-08;4!UBERON:0007846;1.86e-07;3!UBERON:0000043;1.86e-07;3!UBERON:0007845;1.86e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001013,2.04e-18,14;UBERON:0002199,4.25e-13,46;UBERON:0002416,4.25e-13,46;UBERON:0003688,8.99e-13,6;UBERON:0002358,8.99e-13,6;UBERON:0003684,8.99e-13,6;UBERON:0001178,8.99e-13,6;UBERON:0000948,1.16e-10,24;UBERON:0005498,1.16e-10,24;UBERON:0004140,1.16e-10,24;UBERON:0009881,1.16e-10,24;UBERON:0004141,1.16e-10,24;UBERON:0003084,1.16e-10,24;UBERON:0007005,1.16e-10,24;UBERON:0004139,1.16e-10,24;UBERON:0004291,1.16e-10,24;UBERON:0004457,1.74e-10,12;UBERON:0000042,1.74e-10,12;UBERON:0002384,4.14e-10,371;UBERON:0002072,1.09e-09,5;UBERON:0004797,2.10e-09,7;UBERON:0007100,4.05e-09,27;UBERON:0002097,2.98e-08,41;UBERON:0003102,5.19e-08,99;UBERON:0000415,1.12e-07,4;UBERON:0007240,1.12e-07,4;UBERON:0005742,1.12e-07,4;UBERON:0005734,1.12e-07,4;UBERON:0004664,1.12e-07,4;UBERON:0004663,1.12e-07,4;UBERON:0007846,1.99e-07,3;UBERON:0000043,1.99e-07,3;UBERON:0007845,1.99e-07,3 | |||
|phase1_expression=7.44881355009282,19.0549466262975,7.89344662937438,4.00293193412522,9.38618298297304,9.59572376510406,2.53299878168311,5.68547886084148,2.35067065379855,0,0,0,0.263766978228454,0,0.662794751455832,0,0.602694528023977,0,0,0.246242116153576,0.816002764977012,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,2.68280343881454,0.639312809217652,0.361439152384566,0,1.88300474649071,0,0.486634870302636,0.378139268656271,0.886917589850256,0.263504357079378,0.196468613246569,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,1.13967460498122,1.45650098894541,16.3496873826824,2.12801029319014,5.60677600142307,2.1349799145941,1.2333377420858,0.311211035399766,0.404132016209064,0.163461903113459,0.302714855289863,0,0.234321431833797,0,0,0.149448680551801,0.117434498643765,0.323745888736263,0,0,0.368502951935304,1.13658359293342,0,1.7308685049499,0,0.718618141816238,0,0.250237039743928,0.277064115484183,0,1.22595118319608,0.150238058906597,0.453728732640084,5.38168907066586,2.56268866582281,2.54318281391474,5.10154863343484,1.54578793857658,3.60696756063881,2.97786970130544,1.85653965465393,2.43592512902997,3.5340728394176,2.76149695926898,3.55621325001386,6.39017266529906,1.5112814734146,0,0.193260853163297,0,0,0.487894824518382,0.132529768321485,0.116193942869518,0.310983165046111,0.756962552626885,0,0,10.935095949279,1.38134921352481,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,2.94017422771084,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0.063497894292169,0,0,1.71072446022705,0,0,0,0.224262168690721,2.1798003441664,0.1466765716419,0.904902010304444,7.15312891703765,0.845302752556,0.531876233169741,0,0,0,0,0.142977993658148,2.17048642156577,0,0,0,0,6.33022691825131,3.48613383440118,7.59794732983634,0,0,0,0.958499421966331,1.14861935834114,0,0.434343920002738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,1.45579603071565,1.96271887676878,0.946214490203608,1.17141414992713,0.601892199455438,0,0,0,0,1.04260337361699,0.391602314925481,3.43143423810856,0,0,0,0,0,0.604780586659361,5.21026396419431,3.22270143904931,8.41980283299221,11.0199668359903,2.04682899626681,5.62988724002626,14.8418066444991,1.54209693802656,2.66342587969691,0.246381468041427,0.519254429183621,1.39452454151951,0,0,0.0920809889358963,0.34444334449382,0.182091168006717,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,1.31205858279882,0.650756789328606,0.309123034943167,0.27470839445503,0,0,0,1.6068392984416,0,0.154048617114644,0.307007349452259,0,0.107420244868274,0.580066775656914,0.0852266274161009,0.356128142586949,0,0,0,0,0,4.40737285562896,0,0.308033580176089,0,0,0,0.143124886741991,0.372158369359667,0,0.190630193923825,0.767693373934002,0.855877976067841,0.318203247925937,0,0,0.823611089208164,0.471249609382746,0.202182481573316,0,0,0.48763373908959,0.974853958525138,0,0,1.55545975149084,2.26016233240486,0,2.65375590096488,0.438450885253763,0.578775534266688,1.9676842561399,0,0.6196469961995,0.563391205064483,0.286822704408103,0.294747123039363,0,0,6.96655196482292,7.90307743103764,0.379473173765715,0.349934720244983,0,0,0,0.282431402330337,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35227839237992,0,0,0,2.05111450980652,0,0,0,0,1.18785872333055,0.307160702099232,0,0,0,0,0,0.19924798825107,0,0,0,0,0.622079175323615,0,0,0,1.08507746200627,0,0,0.969332746095218,0.278304294485554,0,0,0,0.724999575434793,0,0,0.236387681767936,0.344743373241465,0,0,0,0,0,0,0,0.438770794307945,0,0,0.461701551022782,0,0.69169171316418,0,0,0,0,0,2.04386596391473,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,1.22206028986725,0,0,0,0,1.60515529459758,0,0,0,0,0.394584402849391,0,0,0.31593289814244,0,0,0,0.330991955875499,0.313932918407225,0,0,0,0,0,0,1.7472666824203,0,0,0,0,0.872901148395775,0,1.80784592624426,0,0,0,0.195551382734803,0,0.640358984218058,3.9961921916426,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71906176567983,0,3.6306712165393,0.458320848023367,2.87149209830726,0.399358000997982,0,0,0.134366944973453,0.360299883542404,1.16495949527454,0,0,0,0,0,0,0,0.482259445395058,0.137539436597234,0.415440338029185,0,0,0,0,0,0.0524545881349981,0,0,0.383830394638891,1.42939065274673,1.98627591109629,0,0,0,0,0,0,0,0.453248366080503,0,0,0,0,0,0,0.106787412567695,0.314408610199332,0.828478110694391,0,0,0.121792598380896,0,0.544017803369474,0.5013797880454,0.612691153526923,0.655745261419609,0,0.886068179966986,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,2.23882204330311,1.40227985908335,2.21922344601045,0.189403005275089,0.251567901752575,0,3.66144109435078,4.23446586537069,2.1761208081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| |||
|short_description=p@chr3:13612343..13612379,+ | |||
}} |
Latest revision as of 16:10, 29 July 2015
Short description: | p@chr3:13612343..13612379, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:13612343..13612379, + |
Coexpression cluster: | C943_Mesenchymal_Preadipocyte_Fibroblast_Adipocyte_Synoviocyte_Hair_Mesothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.22e-26 | 76 |
fat cell | 2.64e-15 | 15 |
preadipocyte | 3.01e-15 | 12 |
skin fibroblast | 1.54e-13 | 23 |
connective tissue cell | 2.51e-10 | 361 |
mesenchymal cell | 2.77e-10 | 354 |
multi fate stem cell | 6.80e-09 | 427 |
motile cell | 8.46e-09 | 386 |
somatic stem cell | 1.65e-08 | 433 |
mesenchymal stem cell of adipose | 2.09e-08 | 8 |
stem cell | 5.11e-08 | 441 |
fibroblast of tunica adventitia of artery | 1.12e-07 | 4 |
fibroblast of the aortic adventitia | 1.12e-07 | 4 |
fibrocyte | 1.99e-07 | 3 |
tendon cell | 1.99e-07 | 3 |
adipocyte of omentum tissue | 2.08e-07 | 3 |
preadipocyte of the breast | 3.33e-07 | 3 |
omentum preadipocyte | 5.08e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
adipose tissue | 2.04e-18 | 14 |
integument | 4.25e-13 | 46 |
integumental system | 4.25e-13 | 46 |
omentum | 8.99e-13 | 6 |
peritoneum | 8.99e-13 | 6 |
abdominal cavity | 8.99e-13 | 6 |
visceral peritoneum | 8.99e-13 | 6 |
heart | 1.16e-10 | 24 |
primitive heart tube | 1.16e-10 | 24 |
primary heart field | 1.16e-10 | 24 |
anterior lateral plate mesoderm | 1.16e-10 | 24 |
heart tube | 1.16e-10 | 24 |
heart primordium | 1.16e-10 | 24 |
cardiac mesoderm | 1.16e-10 | 24 |
cardiogenic plate | 1.16e-10 | 24 |
heart rudiment | 1.16e-10 | 24 |
cavity lining | 1.74e-10 | 12 |
serous membrane | 1.74e-10 | 12 |
connective tissue | 4.14e-10 | 371 |
hypodermis | 1.09e-09 | 5 |
blood vessel layer | 2.10e-09 | 7 |
primary circulatory organ | 4.05e-09 | 27 |
skin of body | 2.98e-08 | 41 |
surface structure | 5.19e-08 | 99 |
artery wall | 1.12e-07 | 4 |
tunica adventitia of artery | 1.12e-07 | 4 |
adventitia | 1.12e-07 | 4 |
tunica adventitia of blood vessel | 1.12e-07 | 4 |
aorta tunica adventitia | 1.12e-07 | 4 |
aorta wall | 1.12e-07 | 4 |
dense regular connective tissue | 1.99e-07 | 3 |
tendon | 1.99e-07 | 3 |
regular connective tissue | 1.99e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 6.44e-10 | 5 |
myotonic disease | 6.44e-10 | 5 |
muscle tissue disease | 6.44e-10 | 5 |
myopathy | 6.44e-10 | 5 |
muscular disease | 6.44e-10 | 5 |
myotonic dystrophy | 6.44e-10 | 5 |