FFCP PHASE1:Hg19::chr3:13612234..13612246,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:13612234..13612246,+ | |||
|coexpression_cluster_id=C943 | |||
|description=CAGE_peak_at_chr3:13612234..13612246,+ | |description=CAGE_peak_at_chr3:13612234..13612246,+ | ||
|id=chr3:13612234..13612246,+ | |id=chr3:13612234..13612246,+ | ||
|ontology_enrichment_celltype=CL:0000057!7.58e-14!75;CL:0000136!9.27e-12!15;CL:0002334!1.56e-11!12;CL:0000055!1.68e-07!180;CL:0002559!3.19e-07!4;CL:0002620!4.19e-07!23 | |ontology_enrichment_celltype=CL:0000057!7.58e-14!75;CL:0000136!9.27e-12!15;CL:0002334!1.56e-11!12;CL:0000055!1.68e-07!180;CL:0002559!3.19e-07!4;CL:0002620!4.19e-07!23 | ||
|ontology_enrichment_celltype_v019=CL:0000346;1.36e-23;3!CL:1000428;1.36e-23;3!CL:0000136;2.41e-21;13!CL:0002559;2.10e-14;5!CL:0002615;8.79e-12;3!CL:0000214;1.57e-11;3!CL:0002521;2.78e-11;3!CL:0002579;2.78e-11;3!CL:0002334;1.61e-10;12!CL:0002616;1.81e-09;1!CL:0002581;6.71e-09;1!CL:0002591;6.71e-09;1!CL:1000306;9.01e-09;4!CL:0002547;9.01e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,6.28e-25,15;CL:0000346,1.36e-23,3;CL:1000428,1.36e-23,3;CL:0002559,2.10e-14,5;CL:0002615,8.80e-12,3;CL:0002521,1.94e-11,3;CL:0000214,1.94e-11,3;CL:0002579,2.04e-11,3;CL:0002334,1.38e-10,12;CL:0002616,1.74e-09,1;CL:0002581,6.72e-09,1;CL:1000306,7.88e-09,4;CL:0002547,7.88e-09,4;CL:0002591,1.16e-08,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002199!7.56e-10!45;UBERON:0002416!7.56e-10!45;UBERON:0001013!9.19e-10!14;UBERON:0004923!1.14e-08!57;UBERON:0002072!2.85e-08!5;UBERON:0003688!1.82e-07!6;UBERON:0002358!1.82e-07!6;UBERON:0003684!1.82e-07!6;UBERON:0001178!1.82e-07!6;UBERON:0002073!3.19e-07!4;UBERON:0005086!3.19e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;3.94e-31;9!UBERON:0000042;3.94e-31;9!UBERON:0000412;1.36e-23;3!UBERON:0001992;1.36e-23;3!UBERON:0003688;2.50e-21;6!UBERON:0002358;2.50e-21;6!UBERON:0003684;2.50e-21;6!UBERON:0001178;2.50e-21;6!UBERON:0001013;2.54e-19;14!UBERON:0005406;1.22e-16;2!UBERON:0002073;2.10e-14;5!UBERON:0006915;1.57e-11;3!UBERON:0007616;1.57e-11;3!UBERON:0002217;1.57e-11;3!UBERON:0002018;1.57e-11;3!UBERON:0002190;2.78e-11;3!UBERON:0004923;5.88e-09;55!UBERON:0004797;9.01e-09;4!UBERON:0000415;9.01e-09;4!UBERON:0007240;9.01e-09;4!UBERON:0005742;9.01e-09;4!UBERON:0005734;9.01e-09;4!UBERON:0004664;9.01e-09;4!UBERON:0004663;9.01e-09;4!UBERON:0002067;3.13e-08;9!UBERON:0002072;4.16e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000412,1.36e-23,3;UBERON:0001992,1.36e-23,3;UBERON:0004457,2.78e-23,12;UBERON:0000042,2.78e-23,12;UBERON:0003688,1.84e-21,6;UBERON:0002358,1.84e-21,6;UBERON:0003684,1.84e-21,6;UBERON:0001178,1.84e-21,6;UBERON:0001013,2.76e-19,14;UBERON:0005406,1.17e-16,2;UBERON:0002073,2.10e-14,5;UBERON:0005086,2.10e-14,5;UBERON:0004923,1.88e-12,66;UBERON:0006915,1.94e-11,3;UBERON:0007616,1.94e-11,3;UBERON:0002217,1.94e-11,3;UBERON:0002018,1.94e-11,3;UBERON:0002190,1.94e-11,3;UBERON:0000415,7.88e-09,4;UBERON:0007240,7.88e-09,4;UBERON:0005742,7.88e-09,4;UBERON:0005734,7.88e-09,4;UBERON:0004664,7.88e-09,4;UBERON:0004663,7.88e-09,4;UBERON:0002067,3.13e-08,9;UBERON:0004016,3.13e-08,9;UBERON:0010083,3.13e-08,9;UBERON:0002072,3.36e-07,5 | |||
|phase1_expression=0.908391896352783,1.92690471501885,0.845726424575827,3.00219895059391,3.5756887554183,3.48935409640147,2.53299878168311,0.631719873426831,1.82829939739887,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0,0,0,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.264818361626438,3.15520282823695,1.77334191099179,2.24271040056923,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309977343527296,0,0,0,0.718618141816238,0,0,0,0.438977620880838,0,0.150238058906597,0,0.179389635688862,0,0.635795703478686,0.300091096084402,0.206105058476878,0.257640540045629,0.558350568994769,0,0.0974370051611986,0.757301322732344,0.368199594569197,0.161646056818812,0.710019185033229,0.403008392910561,0.169560592310488,0,0,0,0,0,0,0,0,0,1.56449532329816,2.57296375277154,1.38134921352481,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0.791951872933429,1.80863626235752,0,1.59956785891291,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.415941723061614,0,0.315404830067869,0.35142424497814,0,0,0,0.664225598535437,0,0.434418072340414,0.587403472388222,0.343143423810856,0,0,0,0,0,0,0.496215615637554,0.460385919864187,2.52594084989766,2.69092213436972,0,1.76939313257968,1.48418066444991,0.616838775210622,0.355123450626254,0,0.519254429183621,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0.460511024178389,0,0.107420244868274,0.435050081742686,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0.94443704049192,0,0,0,0,0,0,0.372158369359667,0,0,0.255897791311334,0.42793898803392,0,0,0,0,0.117812402345686,0.202182481573316,0,0,0,0.243713489631284,0,0,0.282810863907425,1.13008116620243,0,0.66343897524122,0,0,0,0,0,0,0.143411352204052,0,0,0,2.11107635297664,2.30506425071931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.23874448473769,0.296964680832639,0,0,0,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0.23056390438806,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0,0,0,0,1.39866726707491,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.558564802544508,0.687481272035051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0.597019211547496,1.16856654923612,0,0,0,0,0.457680136793847,1.20984739010591,0.466311601748341,0,0.159296767163702,0,0.155262956876259,0,0,0,0.601030435988874,0.380805212168795,0.406870733204662,0,0.107410557042488,0.464033759878494,0,0,0.343395705182793,1.34699795506368,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0.245148321753905,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0.924351257262837,0.865253124247578,0,0,0.253397002022874,0,0,0,0.250707539292375,0.682008283964155,0.267964130156178,0,0,0.639701945702943,0.23806443146374,0,0,0,0.0636471582781649,0,0,0,0.134704106029175,0.143444410785353,0.665320713092027,0,0,0,0,0,0,0,0,0.603821380773079,0 | |phase1_expression=0.908391896352783,1.92690471501885,0.845726424575827,3.00219895059391,3.5756887554183,3.48935409640147,2.53299878168311,0.631719873426831,1.82829939739887,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0,0,0,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.264818361626438,3.15520282823695,1.77334191099179,2.24271040056923,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309977343527296,0,0,0,0.718618141816238,0,0,0,0.438977620880838,0,0.150238058906597,0,0.179389635688862,0,0.635795703478686,0.300091096084402,0.206105058476878,0.257640540045629,0.558350568994769,0,0.0974370051611986,0.757301322732344,0.368199594569197,0.161646056818812,0.710019185033229,0.403008392910561,0.169560592310488,0,0,0,0,0,0,0,0,0,1.56449532329816,2.57296375277154,1.38134921352481,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0.791951872933429,1.80863626235752,0,1.59956785891291,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.415941723061614,0,0.315404830067869,0.35142424497814,0,0,0,0.664225598535437,0,0.434418072340414,0.587403472388222,0.343143423810856,0,0,0,0,0,0,0.496215615637554,0.460385919864187,2.52594084989766,2.69092213436972,0,1.76939313257968,1.48418066444991,0.616838775210622,0.355123450626254,0,0.519254429183621,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0.460511024178389,0,0.107420244868274,0.435050081742686,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0.94443704049192,0,0,0,0,0,0,0.372158369359667,0,0,0.255897791311334,0.42793898803392,0,0,0,0,0.117812402345686,0.202182481573316,0,0,0,0.243713489631284,0,0,0.282810863907425,1.13008116620243,0,0.66343897524122,0,0,0,0,0,0,0.143411352204052,0,0,0,2.11107635297664,2.30506425071931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.23874448473769,0.296964680832639,0,0,0,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0.23056390438806,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0,0,0,0,1.39866726707491,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.558564802544508,0.687481272035051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0.597019211547496,1.16856654923612,0,0,0,0,0.457680136793847,1.20984739010591,0.466311601748341,0,0.159296767163702,0,0.155262956876259,0,0,0,0.601030435988874,0.380805212168795,0.406870733204662,0,0.107410557042488,0.464033759878494,0,0,0.343395705182793,1.34699795506368,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0.245148321753905,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0.924351257262837,0.865253124247578,0,0,0.253397002022874,0,0,0,0.250707539292375,0.682008283964155,0.267964130156178,0,0,0.639701945702943,0.23806443146374,0,0,0,0.0636471582781649,0,0,0,0.134704106029175,0.143444410785353,0.665320713092027,0,0,0,0,0,0,0,0,0.603821380773079,0 | ||
|short_description=p@chr3:13612234..13612246,+ | |short_description=p@chr3:13612234..13612246,+ | ||
}} | }} |
Latest revision as of 16:10, 29 July 2015
Short description: | p@chr3:13612234..13612246, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:13612234..13612246, + |
Coexpression cluster: | C943_Mesenchymal_Preadipocyte_Fibroblast_Adipocyte_Synoviocyte_Hair_Mesothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 6.28e-25 | 15 |
hair follicle dermal papilla cell | 1.36e-23 | 3 |
stem cell of epidermis | 1.36e-23 | 3 |
hair follicle cell | 2.10e-14 | 5 |
adipocyte of omentum tissue | 8.80e-12 | 3 |
subcutaneous fat cell | 1.94e-11 | 3 |
synovial cell | 1.94e-11 | 3 |
omentum preadipocyte | 2.04e-11 | 3 |
preadipocyte | 1.38e-10 | 12 |
perirenal adipocyte cell | 1.74e-09 | 1 |
perirenal preadipocyte | 6.72e-09 | 1 |
fibroblast of tunica adventitia of artery | 7.88e-09 | 4 |
fibroblast of the aortic adventitia | 7.88e-09 | 4 |
smooth muscle cell of the pulmonary artery | 1.16e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
dermal papilla | 1.36e-23 | 3 |
papillary layer of dermis | 1.36e-23 | 3 |
cavity lining | 2.78e-23 | 12 |
serous membrane | 2.78e-23 | 12 |
omentum | 1.84e-21 | 6 |
peritoneum | 1.84e-21 | 6 |
abdominal cavity | 1.84e-21 | 6 |
visceral peritoneum | 1.84e-21 | 6 |
adipose tissue | 2.76e-19 | 14 |
perirenal fat | 1.17e-16 | 2 |
hair follicle | 2.10e-14 | 5 |
hair follicle placode | 2.10e-14 | 5 |
organ component layer | 1.88e-12 | 66 |
stratified squamous epithelium | 1.94e-11 | 3 |
layer of synovial tissue | 1.94e-11 | 3 |
synovial joint | 1.94e-11 | 3 |
synovial membrane of synovial joint | 1.94e-11 | 3 |
subcutaneous adipose tissue | 1.94e-11 | 3 |
artery wall | 7.88e-09 | 4 |
tunica adventitia of artery | 7.88e-09 | 4 |
adventitia | 7.88e-09 | 4 |
tunica adventitia of blood vessel | 7.88e-09 | 4 |
aorta tunica adventitia | 7.88e-09 | 4 |
aorta wall | 7.88e-09 | 4 |
dermis | 3.13e-08 | 9 |
dermatome | 3.13e-08 | 9 |
future dermis | 3.13e-08 | 9 |
hypodermis | 3.36e-07 | 5 |