FFCP PHASE1:Hg19::chr3:128740865..128740872,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:128740865..128740872,+ | |||
|coexpression_cluster_id=C122 | |||
|description=CAGE_peak_at_chr3:128740865..128740872,+ | |description=CAGE_peak_at_chr3:128740865..128740872,+ | ||
|id=chr3:128740865..128740872,+ | |id=chr3:128740865..128740872,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000322;1.83e-14;3!CL:0000333;2.74e-09;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,1.60e-14,3 | |||
|ontology_enrichment_development_v019=UBERON:0003918;8.81e-17;10!UBERON:0007687;8.81e-17;10 | |||
|ontology_enrichment_disease=DOID:162!1.77e-18!235;DOID:14566!8.48e-18!239;DOID:2531!5.95e-16!51;DOID:0060083!5.95e-16!51;DOID:1036!2.61e-11!8;DOID:1240!7.12e-11!39;DOID:0050686!8.08e-10!137;DOID:0050687!8.41e-10!143;DOID:305!4.82e-08!106;DOID:7!1.34e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:3910;5.69e-21;2!DOID:3908;3.22e-09;5!DOID:169;5.92e-08;6!DOID:1325;6.04e-07;7!DOID:3904;6.04e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,4.66e-21,2;DOID:3908,2.97e-09,5;DOID:169,5.92e-08,6;DOID:1325,5.70e-07,7;DOID:3904,5.70e-07,7 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;5.69e-21;2!UBERON:0002173;5.69e-21;2!UBERON:0002186;5.69e-21;2!UBERON:0004821;1.83e-14;3!UBERON:0007499;1.83e-14;3!UBERON:0003215;1.83e-14;3!UBERON:0010368;1.83e-14;3!UBERON:0009911;1.83e-14;3!UBERON:0002299;1.83e-14;3!UBERON:0006524;1.83e-14;3!UBERON:0008874;1.83e-14;3!UBERON:0002169;1.83e-14;3!UBERON:0004894;1.83e-14;3!UBERON:0009856;3.42e-11;4!UBERON:0000013;2.74e-09;5!UBERON:0002410;2.74e-09;5!UBERON:0002113;1.36e-07;24!UBERON:0011143;1.36e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,4.66e-21,2;UBERON:0002173,4.66e-21,2;UBERON:0002186,4.66e-21,2;UBERON:0004821,1.60e-14,3;UBERON:0003215,1.60e-14,3;UBERON:0010368,1.60e-14,3;UBERON:0009911,1.60e-14,3;UBERON:0002299,1.60e-14,3;UBERON:0006524,1.60e-14,3;UBERON:0008874,1.60e-14,3;UBERON:0002169,1.60e-14,3;UBERON:0004894,1.60e-14,3;UBERON:0000013,2.74e-09,5;UBERON:0002410,2.74e-09,5;UBERON:0002113,4.55e-07,26;UBERON:0003918,4.55e-07,26;UBERON:0011143,4.55e-07,26;UBERON:0005095,4.55e-07,26;UBERON:0007687,4.55e-07,26 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0.369754010166788,0.0774672005803016,0.426507697462265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0,0.10366105501537,0,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448340575974109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.75894634753143,0,0,0,0,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,1.06824071127473,0,0.245040215981032,0,0.144269212976445,0.142283686696828,0.159426272728822,0,0,0,0.324621940274555,0,0,0.313359791546046,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0,0,0,1.13654458722565,0,0,0,0,0,0.111308705022906,0.16480387422676,0.211125408127993,0,0.276283915531148,0,0,0.369254416383208,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0.225595660617181,0.19606253431774,0.335643173951685,5.123350783553,0.794682894901893,0,0.326465616318295,0.565412285735763,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0.728341138602278,0,0,0,0,1.05226393590145,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0,0,0.19980960958213,0,0,0.343189995723929,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0.525774708558629,0,0,0,0,0,0,0,0,0,0.157566364614447,0,0,0,0.423366660328922,0,0,0.321506296930038,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.328370082997356,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0.151649117541648,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0.213383459388282,0,0,0,0,0,0.127894371303652,0,2.35898912783845,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0.235939446695481,0,0.577628330751691,0,0,0,0,0,0,0,0.327543835020193,0.147856086217045,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0.345701962667338,0,0,0,0.236387681767936,0.333694205676207,0,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0.883164973845552,0.874124575709564,0,0,0.26721740526556,0,0,0,0.267964130156178,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0.488419611665847,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:128740865..128740872,+ | |short_description=p@chr3:128740865..128740872,+ | ||
}} | }} |
Latest revision as of 15:36, 29 July 2015
Short description: | p@chr3:128740865..128740872, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:128740865..128740872, + |
Coexpression cluster: | C122_chronic_Reticulocytes_skeletal_leukemia_acute_colon_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 1.60e-14 | 3 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 4.66e-21 | 2 |
alveolar duct | 4.66e-21 | 2 |
bronchiole | 4.66e-21 | 2 |
pulmonary alveolus epithelium | 1.60e-14 | 3 |
alveolus | 1.60e-14 | 3 |
pulmonary lobule | 1.60e-14 | 3 |
lobule | 1.60e-14 | 3 |
alveolus of lung | 1.60e-14 | 3 |
alveolar system | 1.60e-14 | 3 |
pulmonary acinus | 1.60e-14 | 3 |
alveolar sac | 1.60e-14 | 3 |
alveolar wall | 1.60e-14 | 3 |
sympathetic nervous system | 2.74e-09 | 5 |
autonomic nervous system | 2.74e-09 | 5 |
kidney | 4.55e-07 | 26 |
kidney mesenchyme | 4.55e-07 | 26 |
upper urinary tract | 4.55e-07 | 26 |
kidney rudiment | 4.55e-07 | 26 |
kidney field | 4.55e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 4.66e-21 | 2 |
non-small cell lung carcinoma | 2.97e-09 | 5 |
neuroendocrine tumor | 5.92e-08 | 6 |
bronchus cancer | 5.70e-07 | 7 |
bronchogenic carcinoma | 5.70e-07 | 7 |