FFCP PHASE1:Hg19::chr3:112357575..112357598,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:112357575..112357598,- | |||
|coexpression_cluster_id=C333 | |||
|description=CAGE_peak_at_chr3:112357575..112357598,- | |description=CAGE_peak_at_chr3:112357575..112357598,- | ||
|id=chr3:112357575..112357598,- | |id=chr3:112357575..112357598,- | ||
|ontology_enrichment_celltype=CL:0000055!6.95e-28!180;CL:0000057!7.77e-19!75;CL:0000680!3.44e-14!57;CL:0000056!3.44e-14!57;CL:0000355!3.44e-14!57;CL:0000187!1.08e-12!54;CL:0000183!1.81e-11!59;CL:0000393!8.72e-10!60;CL:0000211!8.72e-10!60;CL:0000192!1.60e-09!42;CL:0000514!1.60e-09!42;CL:0002334!4.32e-09!12;CL:0002620!4.45e-09!23;CL:0000359!2.03e-08!32;CL:0000222!1.53e-07!119 | |ontology_enrichment_celltype=CL:0000055!6.95e-28!180;CL:0000057!7.77e-19!75;CL:0000680!3.44e-14!57;CL:0000056!3.44e-14!57;CL:0000355!3.44e-14!57;CL:0000187!1.08e-12!54;CL:0000183!1.81e-11!59;CL:0000393!8.72e-10!60;CL:0000211!8.72e-10!60;CL:0000192!1.60e-09!42;CL:0000514!1.60e-09!42;CL:0002334!4.32e-09!12;CL:0002620!4.45e-09!23;CL:0000359!2.03e-08!32;CL:0000222!1.53e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0002334;1.68e-13;12!CL:0002620;6.26e-10;23!CL:0002320;3.39e-07;188!CL:0000057;5.29e-07;73!CL:0000134;9.72e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.08e-20,76;CL:0002334,1.61e-13,12;CL:0000048,2.07e-11,427;CL:0000723,8.32e-11,433;CL:0002620,4.92e-10,23;CL:0000034,4.93e-10,441;CL:0000136,1.94e-07,15;CL:0000680,2.22e-07,58;CL:0000056,2.22e-07,58;CL:0000355,2.22e-07,58;CL:0002320,4.71e-07,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;1.62e-07;5!DOID:450;1.62e-07;5!DOID:66;1.62e-07;5!DOID:423;1.62e-07;5!DOID:0080000;1.62e-07;5!DOID:11722;1.62e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.69e-07,5;DOID:450,1.69e-07,5;DOID:66,1.69e-07,5;DOID:423,1.69e-07,5;DOID:0080000,1.69e-07,5;DOID:11722,1.69e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0002385!7.18e-15!63;UBERON:0001015!7.18e-15!63;UBERON:0000383!7.18e-15!63;UBERON:0000914!1.34e-14!83;UBERON:0002329!1.34e-14!83;UBERON:0003077!1.34e-14!83;UBERON:0003059!1.34e-14!83;UBERON:0007282!1.34e-14!83;UBERON:0009618!1.34e-14!83;UBERON:0007285!1.34e-14!83;UBERON:0001134!1.90e-14!61;UBERON:0002036!1.90e-14!61;UBERON:0003082!1.90e-14!61;UBERON:0004290!3.93e-14!70;UBERON:0000486!5.34e-12!82;UBERON:0004872!3.86e-11!84;UBERON:0004923!7.95e-09!57;UBERON:0005256!1.30e-08!143;UBERON:0000948!1.38e-08!24;UBERON:0005498!1.38e-08!24;UBERON:0004140!1.38e-08!24;UBERON:0009881!1.38e-08!24;UBERON:0004141!1.38e-08!24;UBERON:0003084!1.38e-08!24;UBERON:0007005!1.38e-08!24;UBERON:0004139!1.38e-08!24;UBERON:0004291!1.38e-08!24;UBERON:0002199!4.94e-08!45;UBERON:0002416!4.94e-08!45;UBERON:0003102!6.89e-08!95;UBERON:0002100!9.93e-08!216;UBERON:0007100!2.48e-07!27;UBERON:0000490!5.88e-07!138;UBERON:0000475!7.81e-07!365;UBERON:0002097!9.08e-07!40;UBERON:0001637!9.21e-07!42;UBERON:0003509!9.21e-07!42;UBERON:0004572!9.21e-07!42 | |ontology_enrichment_uberon=UBERON:0002385!7.18e-15!63;UBERON:0001015!7.18e-15!63;UBERON:0000383!7.18e-15!63;UBERON:0000914!1.34e-14!83;UBERON:0002329!1.34e-14!83;UBERON:0003077!1.34e-14!83;UBERON:0003059!1.34e-14!83;UBERON:0007282!1.34e-14!83;UBERON:0009618!1.34e-14!83;UBERON:0007285!1.34e-14!83;UBERON:0001134!1.90e-14!61;UBERON:0002036!1.90e-14!61;UBERON:0003082!1.90e-14!61;UBERON:0004290!3.93e-14!70;UBERON:0000486!5.34e-12!82;UBERON:0004872!3.86e-11!84;UBERON:0004923!7.95e-09!57;UBERON:0005256!1.30e-08!143;UBERON:0000948!1.38e-08!24;UBERON:0005498!1.38e-08!24;UBERON:0004140!1.38e-08!24;UBERON:0009881!1.38e-08!24;UBERON:0004141!1.38e-08!24;UBERON:0003084!1.38e-08!24;UBERON:0007005!1.38e-08!24;UBERON:0004139!1.38e-08!24;UBERON:0004291!1.38e-08!24;UBERON:0002199!4.94e-08!45;UBERON:0002416!4.94e-08!45;UBERON:0003102!6.89e-08!95;UBERON:0002100!9.93e-08!216;UBERON:0007100!2.48e-07!27;UBERON:0000490!5.88e-07!138;UBERON:0000475!7.81e-07!365;UBERON:0002097!9.08e-07!40;UBERON:0001637!9.21e-07!42;UBERON:0003509!9.21e-07!42;UBERON:0004572!9.21e-07!42 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.11e-09;9!UBERON:0000042;1.11e-09;9!UBERON:0003688;6.13e-09;6!UBERON:0002358;6.13e-09;6!UBERON:0003684;6.13e-09;6!UBERON:0001178;6.13e-09;6!UBERON:0001013;1.53e-08;14!UBERON:0000948;2.18e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,7.07e-09,6;UBERON:0002358,7.07e-09,6;UBERON:0003684,7.07e-09,6;UBERON:0001178,7.07e-09,6;UBERON:0000926,7.62e-09,315;UBERON:0004120,7.62e-09,315;UBERON:0006603,7.62e-09,315;UBERON:0004797,9.46e-09,7;UBERON:0001013,9.82e-09,14;UBERON:0002199,1.06e-08,46;UBERON:0002416,1.06e-08,46;UBERON:0002385,7.08e-08,64;UBERON:0001015,7.08e-08,64;UBERON:0000383,7.08e-08,64;UBERON:0004872,1.02e-07,83;UBERON:0000948,1.11e-07,24;UBERON:0005498,1.11e-07,24;UBERON:0004140,1.11e-07,24;UBERON:0009881,1.11e-07,24;UBERON:0004141,1.11e-07,24;UBERON:0003084,1.11e-07,24;UBERON:0007005,1.11e-07,24;UBERON:0004139,1.11e-07,24;UBERON:0004291,1.11e-07,24;UBERON:0001134,1.14e-07,62;UBERON:0002036,1.14e-07,62;UBERON:0003082,1.14e-07,62;UBERON:0002384,2.42e-07,371;UBERON:0004923,8.21e-07,66;UBERON:0007524,9.02e-07,73 | |||
|phase1_expression=4.72363786103447,23.1228565802262,18.7469357447642,9.00659685178174,20.113249249228,19.1914475302081,2.53299878168311,0,3.3954131665979,0.245733936501509,0,1.52908960491121,1.58260186937072,0.866364470720326,1.32558950291166,1.34465029290355,0,0,0.975865597581014,0,0.408001382488506,0.626909442956176,0,0,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.75227465255847,2.68280343881454,2.9408389224012,1.0843174571537,4.01070328508712,4.05570253090306,1.5905718941022,3.40644409211845,0.283604451492204,1.55210578223795,0.087834785693126,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,7.45457927542978,10.5103324681601,5.29636723252875,53.3516114592794,9.57604631935564,9.53151920241922,0,5.18001851676036,4.35695449559673,0.404132016209064,0.326923806226917,1.05950199351452,0,0,0.312160076830321,0,0.448346041655403,0.469737994575059,0.647491777472526,0.140450806702248,0.204154171254893,0.122834317311768,0.206651562351531,1.18800285728205,1.7308685049499,0.910161361938026,0,0,0.125118519871964,0.277064115484183,1.75591048352335,2.75839016219118,1.05166641234618,0.680593098960126,16.5038464833753,5.55249210928275,7.41761654058466,11.4034616512073,9.2747276314595,9.27505944164265,6.14185625894246,5.73839529620305,5.84622030967192,9.59248342127635,5.79914361446486,4.68773564774555,22.3656043285467,6.34738218834134,1.86516651541536,0,0,0.286804595389004,0,0,0.116193942869518,0.207322110030741,0,0,0,11.5783368874719,0,2.3218396401599,0,0.118306800039844,0,0,0,0,0.237270619111097,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0.100528972411631,0,0,0,0,0,0.352226082707465,0.433099343283221,0,0.380508304469197,0,0,0,0,0,0,0.16798212819886,0,0,0.290633938513962,0,0,0,0,0.144119953416961,0,0,0,0,0,0.102827492703324,0,0.571652865261156,0.448524337381443,1.30788020649984,1.24675085895615,1.55126058909333,0,2.535908257668,0.26593811658487,0,0.257207374262142,0,0.266422179016099,2.14466990487221,0,0.823240336780769,0.325736184293735,0.355391948742546,0.791951872933429,1.50719688529793,1.74306691720059,1.29964888536674,0,0,0,1.19812427745791,2.29723871668228,0,5.35690834670043,3.08214483825575,2.14873155887875,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,2.69921281782108,0.500170521059677,1.35632511849868,1.03985430765404,5.35286966391485,1.41932173530541,1.17141414992713,2.10662269809403,2.27407504055985,0,1.32845119707087,0.368738337083406,0.434418072340414,0.587403472388222,0.343143423810856,0,0,0,1.5156378572313,18.3078983461547,4.83824469327489,10.4205279283886,3.99001130548962,10.3844234940237,26.0122472989073,4.09365799253363,16.2462460355044,8.90508398669946,4.31787142647436,2.48586415438378,1.39616165223476,2.59627214591811,2.5566283261191,0.120859449591622,0.40101294060657,0,2.41110341145674,2.54927635209404,4.85160335349869,0,0,0,0,0,0,0,0.431831832204279,0,0,0,0,0,0,0,0,0,0.328014645699706,0.650756789328606,0.309123034943167,0.27470839445503,0.165018999841176,0.574265537996172,0,9.64103579064957,0.48335359146061,1.07834031980251,0.614014698904518,0.827019434907183,1.6113036730241,2.61030049045611,0.340906509664404,0.979352392114111,0.165284915360978,0.384380134730212,0.127612712494584,0,5.11330104227014,43.1292915157977,0,0.924100740528266,1.59691809095107,0.869932992075073,0.55597265731176,0.858749320451947,1.116475108079,1.2655176988749,1.5250415513906,0.255897791311334,1.71175595213568,0.318203247925937,0.78494864019923,0.719489830333259,2.47083326762449,0.706874414074119,0.404364963146632,0,0.421258456238981,0.48763373908959,4.14312932373184,3.16950440270266,2.04749867111979,6.6460553018245,6.78048699721457,0.551365343546124,4.64407282668854,3.5076070820301,0,0,1.21746226177622,0.6196469961995,1.97186921772569,0.286822704408103,0.982490410131212,2.49669736036875,0.354761064070598,6.54433669422759,8.23237232399755,0.379473173765715,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46508179271894,0,0,0.284136146806413,1.43246690842614,2.67268212749375,2.45728561679386,0,0,0.779160935160341,0,0,0.996239941255349,0.276283915531148,0,0,0,6.22079175323615,0.0898683511473268,0,0,1.08507746200627,0,0,0,0,0,0,0,0.724999575434793,0,0.254253650292766,0,0,0,0.173624994933292,0,0.120596438625408,0,0.221158519862449,0.295547618953547,0,0,0,3.38581137416707,0.227884111694002,0,0,0,0,0.549585560411174,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0.865554558968364,0,0.353830258013357,0.611030144933625,0,0,0,0,1.60515529459758,0,0,0.19566461893209,0,0.789168805698781,0,0,1.64285107034069,0,0,0,0,0,0,0,0,0,0.0979923974143777,1.39294730528644,5.94070672022902,0.51595809741485,0,0,0,1.26085721434945,0,0.451961481561065,0.274083849293502,0,0,0,0.721429382263803,1.06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| ||
|short_description=p@chr3:112357575..112357598,- | |short_description=p@chr3:112357575..112357598,- | ||
}} | }} |
Latest revision as of 14:18, 29 July 2015
Short description: | p@chr3:112357575..112357598, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:112357575..112357598, - |
Coexpression cluster: | C333_Fibroblast_Smooth_Preadipocyte_Adipocyte_Ewing_Placental_sacrococcigeal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.08e-20 | 76 |
preadipocyte | 1.61e-13 | 12 |
multi fate stem cell | 2.07e-11 | 427 |
somatic stem cell | 8.32e-11 | 433 |
skin fibroblast | 4.92e-10 | 23 |
stem cell | 4.93e-10 | 441 |
fat cell | 1.94e-07 | 15 |
muscle precursor cell | 2.22e-07 | 58 |
myoblast | 2.22e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.22e-07 | 58 |
connective tissue cell | 4.71e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
omentum | 7.07e-09 | 6 |
peritoneum | 7.07e-09 | 6 |
abdominal cavity | 7.07e-09 | 6 |
visceral peritoneum | 7.07e-09 | 6 |
mesoderm | 7.62e-09 | 315 |
mesoderm-derived structure | 7.62e-09 | 315 |
presumptive mesoderm | 7.62e-09 | 315 |
blood vessel layer | 9.46e-09 | 7 |
adipose tissue | 9.82e-09 | 14 |
integument | 1.06e-08 | 46 |
integumental system | 1.06e-08 | 46 |
muscle tissue | 7.08e-08 | 64 |
musculature | 7.08e-08 | 64 |
musculature of body | 7.08e-08 | 64 |
splanchnic layer of lateral plate mesoderm | 1.02e-07 | 83 |
heart | 1.11e-07 | 24 |
primitive heart tube | 1.11e-07 | 24 |
primary heart field | 1.11e-07 | 24 |
anterior lateral plate mesoderm | 1.11e-07 | 24 |
heart tube | 1.11e-07 | 24 |
heart primordium | 1.11e-07 | 24 |
cardiac mesoderm | 1.11e-07 | 24 |
cardiogenic plate | 1.11e-07 | 24 |
heart rudiment | 1.11e-07 | 24 |
skeletal muscle tissue | 1.14e-07 | 62 |
striated muscle tissue | 1.14e-07 | 62 |
myotome | 1.14e-07 | 62 |
connective tissue | 2.42e-07 | 371 |
organ component layer | 8.21e-07 | 66 |
dense mesenchyme tissue | 9.02e-07 | 73 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.69e-07 | 5 |
myotonic disease | 1.69e-07 | 5 |
muscle tissue disease | 1.69e-07 | 5 |
myopathy | 1.69e-07 | 5 |
muscular disease | 1.69e-07 | 5 |
myotonic dystrophy | 1.69e-07 | 5 |