FFCP PHASE1:Hg19::chr2:45168633..45168642,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000456467_5end | |association_with_transcript=0bp_to_ENST00000456467_5end | ||
|cluster_id=chr2:45168633..45168642,- | |||
|coexpression_cluster_id=C89 | |coexpression_cluster_id=C89 | ||
|description=CAGE_peak_3_at_ENST00000456467_5end | |description=CAGE_peak_3_at_ENST00000456467_5end | ||
|id=chr2:45168633..45168642,- | |id=chr2:45168633..45168642,- | ||
|ontology_enrichment_celltype=CL:0000064!3.45e-26!3;CL:0005012!3.45e-26!3;CL:0000067!3.45e-26!3;CL:0002304!3.45e-26!3;CL:0000306!1.22e-19!4;CL:0002222!1.22e-19!4;CL:0002224!1.22e-19!4;CL:0000075!1.48e-14!27;CL:0000342!1.48e-09!1;CL:0002565!1.48e-09!1;CL:0000710!6.22e-07!20 | |ontology_enrichment_celltype=CL:0000064!3.45e-26!3;CL:0005012!3.45e-26!3;CL:0000067!3.45e-26!3;CL:0002304!3.45e-26!3;CL:0000306!1.22e-19!4;CL:0002222!1.22e-19!4;CL:0002224!1.22e-19!4;CL:0000075!1.48e-14!27;CL:0000342!1.48e-09!1;CL:0002565!1.48e-09!1;CL:0000710!6.22e-07!20 | ||
|ontology_enrichment_celltype_v019=CL:0000064;3.66e-23;3!CL:0000067;3.66e-23;3!CL:0005012;3.66e-23;3!CL:0002304;3.66e-23;3!CL:0000306;9.45e-18;4!CL:0002222;9.45e-18;4!CL:0002224;9.45e-18;4!CL:0000075;6.90e-11;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,4.09e-23,3;CL:0000067,4.09e-23,3;CL:0005012,4.09e-23,3;CL:0002304,4.09e-23,3;CL:0000306,8.69e-18,4;CL:0002222,8.69e-18,4;CL:0002224,8.69e-18,4;CL:0000075,6.90e-11,27 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:5409!2.27e-09!4 | |ontology_enrichment_disease=DOID:5409!2.27e-09!4 | ||
|ontology_enrichment_disease_v019=DOID:5409;7.35e-18;4!DOID:1325;8.16e-11;7!DOID:3904;8.16e-11;7!DOID:3905;1.04e-08;9 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,7.35e-18,4;DOID:1325,8.16e-11,7;DOID:3904,8.16e-11,7;DOID:3905,1.04e-08,9 | |||
|ontology_enrichment_uberon=UBERON:0007625!4.44e-48!11;UBERON:0000970!1.61e-40!20;UBERON:0002104!1.61e-38!21;UBERON:0000020!4.82e-35!23;UBERON:0000019!1.05e-34!19;UBERON:0000047!1.05e-34!19;UBERON:0004088!1.05e-34!19;UBERON:0003072!1.05e-34!19;UBERON:0003071!1.05e-34!19;UBERON:0004128!1.05e-34!19;UBERON:0000488!5.83e-34!4;UBERON:0001032!1.60e-33!24;UBERON:0004456!1.60e-33!24;UBERON:0001456!2.76e-31!21;UBERON:0001801!9.11e-29!14;UBERON:0001778!3.45e-26!3;UBERON:0001775!3.45e-26!3;UBERON:0002203!9.43e-23!6;UBERON:0001768!9.43e-23!6;UBERON:0005085!2.60e-22!29;UBERON:0003056!1.28e-20!61;UBERON:0010077!1.22e-19!4;UBERON:0005389!1.22e-19!4;UBERON:0000484!1.22e-19!4;UBERON:0002546!1.22e-19!4;UBERON:0000965!1.22e-19!4;UBERON:0001803!1.22e-19!4;UBERON:0003073!1.22e-19!4;UBERON:0005426!1.22e-19!4;UBERON:0002200!4.12e-19!11;UBERON:0006876!4.12e-19!11;UBERON:0003075!2.23e-16!86;UBERON:0007284!2.23e-16!86;UBERON:0002346!1.50e-15!90;UBERON:0001444!5.76e-13!48;UBERON:0009663!3.30e-11!7;UBERON:0000033!1.03e-10!123;UBERON:0000153!4.15e-10!129;UBERON:0007811!4.15e-10!129;UBERON:0000076!4.23e-10!8;UBERON:0001882!8.91e-10!1;UBERON:0005403!8.91e-10!1;UBERON:0002506!1.48e-09!1;UBERON:0001769!1.48e-09!1;UBERON:0002363!2.67e-09!1;UBERON:0007647!2.67e-09!1;UBERON:0010115!2.67e-09!1;UBERON:0000369!2.68e-09!4;UBERON:0002435!2.68e-09!4;UBERON:0000204!2.68e-09!4;UBERON:0010082!2.68e-09!4;UBERON:0002308!7.86e-09!9;UBERON:0002420!7.86e-09!9;UBERON:0000125!7.86e-09!9;UBERON:0007245!7.86e-09!9;UBERON:0010009!7.86e-09!9;UBERON:0010011!7.86e-09!9;UBERON:0000454!7.86e-09!9;UBERON:0000063!1.02e-08!97;UBERON:0004121!2.67e-08!169;UBERON:0000924!4.75e-08!173;UBERON:0006601!4.75e-08!173;UBERON:0000966!8.53e-08!5;UBERON:0005388!8.53e-08!5;UBERON:0001802!8.53e-08!5 | |ontology_enrichment_uberon=UBERON:0007625!4.44e-48!11;UBERON:0000970!1.61e-40!20;UBERON:0002104!1.61e-38!21;UBERON:0000020!4.82e-35!23;UBERON:0000019!1.05e-34!19;UBERON:0000047!1.05e-34!19;UBERON:0004088!1.05e-34!19;UBERON:0003072!1.05e-34!19;UBERON:0003071!1.05e-34!19;UBERON:0004128!1.05e-34!19;UBERON:0000488!5.83e-34!4;UBERON:0001032!1.60e-33!24;UBERON:0004456!1.60e-33!24;UBERON:0001456!2.76e-31!21;UBERON:0001801!9.11e-29!14;UBERON:0001778!3.45e-26!3;UBERON:0001775!3.45e-26!3;UBERON:0002203!9.43e-23!6;UBERON:0001768!9.43e-23!6;UBERON:0005085!2.60e-22!29;UBERON:0003056!1.28e-20!61;UBERON:0010077!1.22e-19!4;UBERON:0005389!1.22e-19!4;UBERON:0000484!1.22e-19!4;UBERON:0002546!1.22e-19!4;UBERON:0000965!1.22e-19!4;UBERON:0001803!1.22e-19!4;UBERON:0003073!1.22e-19!4;UBERON:0005426!1.22e-19!4;UBERON:0002200!4.12e-19!11;UBERON:0006876!4.12e-19!11;UBERON:0003075!2.23e-16!86;UBERON:0007284!2.23e-16!86;UBERON:0002346!1.50e-15!90;UBERON:0001444!5.76e-13!48;UBERON:0009663!3.30e-11!7;UBERON:0000033!1.03e-10!123;UBERON:0000153!4.15e-10!129;UBERON:0007811!4.15e-10!129;UBERON:0000076!4.23e-10!8;UBERON:0001882!8.91e-10!1;UBERON:0005403!8.91e-10!1;UBERON:0002506!1.48e-09!1;UBERON:0001769!1.48e-09!1;UBERON:0002363!2.67e-09!1;UBERON:0007647!2.67e-09!1;UBERON:0010115!2.67e-09!1;UBERON:0000369!2.68e-09!4;UBERON:0002435!2.68e-09!4;UBERON:0000204!2.68e-09!4;UBERON:0010082!2.68e-09!4;UBERON:0002308!7.86e-09!9;UBERON:0002420!7.86e-09!9;UBERON:0000125!7.86e-09!9;UBERON:0007245!7.86e-09!9;UBERON:0010009!7.86e-09!9;UBERON:0010011!7.86e-09!9;UBERON:0000454!7.86e-09!9;UBERON:0000063!1.02e-08!97;UBERON:0004121!2.67e-08!169;UBERON:0000924!4.75e-08!173;UBERON:0006601!4.75e-08!173;UBERON:0000966!8.53e-08!5;UBERON:0005388!8.53e-08!5;UBERON:0001802!8.53e-08!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0007625;6.20e-25;11!UBERON:0001778;3.66e-23;3!UBERON:0001775;3.66e-23;3!UBERON:0001801;7.13e-20;14!UBERON:0010077;9.45e-18;4!UBERON:0005389;9.45e-18;4!UBERON:0000488;9.45e-18;4!UBERON:0000484;9.45e-18;4!UBERON:0000965;9.45e-18;4!UBERON:0001803;9.45e-18;4!UBERON:0000019;5.66e-15;19!UBERON:0000047;5.66e-15;19!UBERON:0004088;5.66e-15;19!UBERON:0010230;5.66e-15;19!UBERON:0000970;2.76e-14;20!UBERON:0002104;1.16e-13;21!UBERON:0001456;1.16e-13;21!UBERON:0000020;1.41e-12;23!UBERON:0002203;2.59e-12;6!UBERON:0001768;2.59e-12;6!UBERON:0002200;2.59e-12;6!UBERON:0001032;4.20e-12;24!UBERON:0004456;4.20e-12;24!UBERON:0010371;2.91e-09;31!UBERON:0006876;2.55e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,6.20e-25,11;UBERON:0001778,4.09e-23,3;UBERON:0001775,4.09e-23,3;UBERON:0001801,7.13e-20,14;UBERON:0010077,8.69e-18,4;UBERON:0005389,8.69e-18,4;UBERON:0000484,8.69e-18,4;UBERON:0002546,8.69e-18,4;UBERON:0000965,8.69e-18,4;UBERON:0001803,8.69e-18,4;UBERON:0003073,8.69e-18,4;UBERON:0005426,8.69e-18,4;UBERON:0000488,1.03e-17,4;UBERON:0000019,2.76e-14,20;UBERON:0000047,2.76e-14,20;UBERON:0010312,2.76e-14,20;UBERON:0004088,2.76e-14,20;UBERON:0010230,2.76e-14,20;UBERON:0003072,2.76e-14,20;UBERON:0004128,2.76e-14,20;UBERON:0003071,2.76e-14,20;UBERON:0000970,1.16e-13,21;UBERON:0002104,1.16e-13,21;UBERON:0001456,4.26e-13,22;UBERON:0002203,2.74e-12,6;UBERON:0001768,2.74e-12,6;UBERON:0002200,2.74e-12,6;UBERON:0000020,4.20e-12,24;UBERON:0001032,4.20e-12,24;UBERON:0004456,4.20e-12,24;UBERON:0005085,1.25e-09,31;UBERON:0000076,1.35e-09,8;UBERON:0006876,2.63e-07,11 | |||
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|short_description=p3@ENST00000456467 | |short_description=p3@ENST00000456467 | ||
}} | }} |
Latest revision as of 10:23, 29 July 2015
Short description: | p3@ENST00000456467 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ENST00000456467_5end |
Coexpression cluster: | C89_small_retinoblastoma_medulloblastoma_iPS_acantholytic_eye_bronchogenic |
Association with transcript: | 0bp_to_ENST00000456467_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 4.09e-23 | 3 |
ciliated epithelial cell | 4.09e-23 | 3 |
multi-ciliated epithelial cell | 4.09e-23 | 3 |
non-pigmented ciliary epithelial cell | 4.09e-23 | 3 |
crystallin accumulating cell | 8.69e-18 | 4 |
vertebrate lens cell | 8.69e-18 | 4 |
lens epithelial cell | 8.69e-18 | 4 |
columnar/cuboidal epithelial cell | 6.90e-11 | 27 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 6.20e-25 | 11 |
ciliary epithelium | 4.09e-23 | 3 |
ciliary body | 4.09e-23 | 3 |
anterior segment of eyeball | 7.13e-20 | 14 |
cuboidal epithelium | 8.69e-18 | 4 |
transparent eye structure | 8.69e-18 | 4 |
simple cuboidal epithelium | 8.69e-18 | 4 |
cranial placode | 8.69e-18 | 4 |
lens of camera-type eye | 8.69e-18 | 4 |
epithelium of lens | 8.69e-18 | 4 |
lens placode | 8.69e-18 | 4 |
lens vesicle | 8.69e-18 | 4 |
atypical epithelium | 1.03e-17 | 4 |
camera-type eye | 2.76e-14 | 20 |
simple eye | 2.76e-14 | 20 |
immature eye | 2.76e-14 | 20 |
ocular region | 2.76e-14 | 20 |
eyeball of camera-type eye | 2.76e-14 | 20 |
optic cup | 2.76e-14 | 20 |
optic vesicle | 2.76e-14 | 20 |
eye primordium | 2.76e-14 | 20 |
eye | 1.16e-13 | 21 |
visual system | 1.16e-13 | 21 |
face | 4.26e-13 | 22 |
vasculature of eye | 2.74e-12 | 6 |
uvea | 2.74e-12 | 6 |
vasculature of head | 2.74e-12 | 6 |
sense organ | 4.20e-12 | 24 |
sensory system | 4.20e-12 | 24 |
entire sense organ system | 4.20e-12 | 24 |
ectodermal placode | 1.25e-09 | 31 |
external ectoderm | 1.35e-09 | 8 |
vasculature of organ | 2.63e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 7.35e-18 | 4 |
bronchus cancer | 8.16e-11 | 7 |
bronchogenic carcinoma | 8.16e-11 | 7 |
lung carcinoma | 1.04e-08 | 9 |