FFCP PHASE1:Hg19::chr2:224862976..224862989,+: Difference between revisions
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|id=chr2:224862976..224862989,+
|short_description=p@chr2:224862976..224862989,+
|description=CAGE_peak_at_chr2:224862976..224862989,+
|association_with_transcript=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:224862976..224862989,+ | |||
|coexpression_cluster_id=C354 | |||
|description=CAGE_peak_at_chr2:224862976..224862989,+ | |||
|id=chr2:224862976..224862989,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.49e-17!180;CL:0000057!6.43e-14!75;CL:0002620!7.63e-09!23 | |||
|ontology_enrichment_celltype_v019=CL:1000306;1.60e-14;4!CL:0002547;1.60e-14;4!CL:0000499;2.00e-13;28!CL:0000135;6.01e-12;3!CL:0000388;6.01e-12;3!CL:0002579;1.25e-11;3!CL:0002334;1.62e-10;12!CL:0000153;3.92e-10;9!CL:0000447;3.92e-10;9!CL:0000327;3.29e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.42e-19,76;CL:1000306,4.40e-14,4;CL:0002547,4.40e-14,4;CL:0000499,1.39e-13,28;CL:0000135,7.13e-12,3;CL:0000388,7.13e-12,3;CL:0002579,1.70e-11,3;CL:0002334,1.46e-10,12;CL:0000153,2.57e-10,9;CL:0000447,2.57e-10,9;CL:0000048,2.09e-09,427;CL:0000723,3.99e-09,433;CL:0000034,9.16e-09,441;CL:0002320,2.00e-08,361;CL:0000327,2.11e-08,15;CL:0000134,4.15e-08,354;CL:0000136,7.42e-08,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002199!5.57e-08!45;UBERON:0002416!5.57e-08!45;UBERON:0002097!2.14e-07!40;UBERON:0003688!3.78e-07!6;UBERON:0002358!3.78e-07!6;UBERON:0003684!3.78e-07!6;UBERON:0001178!3.78e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.86e-19;9!UBERON:0000042;2.86e-19;9!UBERON:0003688;5.48e-15;6!UBERON:0002358;5.48e-15;6!UBERON:0003684;5.48e-15;6!UBERON:0001178;5.48e-15;6!UBERON:0004797;1.60e-14;4!UBERON:0000415;1.60e-14;4!UBERON:0007240;1.60e-14;4!UBERON:0005742;1.60e-14;4!UBERON:0005734;1.60e-14;4!UBERON:0004664;1.60e-14;4!UBERON:0004663;1.60e-14;4!UBERON:0007846;6.01e-12;3!UBERON:0000043;6.01e-12;3!UBERON:0007845;6.01e-12;3!UBERON:0005406;4.29e-09;2!UBERON:0004923;3.31e-08;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.24e-14,6;UBERON:0002358,1.24e-14,6;UBERON:0003684,1.24e-14,6;UBERON:0001178,1.24e-14,6;UBERON:0000415,4.40e-14,4;UBERON:0007240,4.40e-14,4;UBERON:0005742,4.40e-14,4;UBERON:0005734,4.40e-14,4;UBERON:0004664,4.40e-14,4;UBERON:0004663,4.40e-14,4;UBERON:0004457,6.14e-14,12;UBERON:0000042,6.14e-14,12;UBERON:0007846,7.13e-12,3;UBERON:0000043,7.13e-12,3;UBERON:0007845,7.13e-12,3;UBERON:0004923,1.88e-11,66;UBERON:0005406,4.31e-09,2;UBERON:0002384,1.21e-08,371;UBERON:0004797,4.41e-08,7 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.986680828671798,1.0007329835313,2.23480547213644,13.0850778615055,2.53299878168311,0,0,0,0,0,0,0.123766352960047,1.32558950291166,0.672325146451775,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,1.80719576192283,0.50133791063589,1.73815822752988,0,9.24606253575008,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.96366342034382,1.01304409331664,1.05927344650575,9.46560848471085,1.06400514659507,2.80338800071154,0,0.49333509683432,0,0.134710672069688,0,0,0,0,0,0,1.04614076386261,0.23486899728753,0,0.140450806702248,0.61246251376468,0.122834317311768,0,2.37600571456411,0,0,0.718618141816238,0,0,0,0,0.30648779579902,0.45071417671979,0.113432183160021,1.07633781413317,0.427114777637135,0.847727604638247,5.40163972951924,0.721367704669072,1.8034837803194,1.11670113798954,0.675105328965065,0.194874010322397,1.26216887122057,0.644349290496095,0,9.23024940543197,0.503760491138201,0,0.193260853163297,0.272746120590835,0,0,0,0.116193942869518,0,0.252320850875628,0,1.56449532329816,1.92972281457866,0,0,0,0.236613600079688,0,0,0,0,0,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.439001141634502,0,0.502644862058154,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0,0.447792613514241,0.290633938513962,0.383382679165211,0,0,0,0,0,0.126995788584338,0,0,0,0.308482478109971,0.300343057843917,0.571652865261156,0,0,0.07333828582095,1.16344544182,0,0,0.531876233169741,0,0,0,0.799266537048298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01346914667305,1.43833425785268,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0.535286966391485,0.157702415033935,0.468565659970853,0,0,0,0.664225598535437,0.184369168541703,1.39013783148933,0,0,0,0,0,0,0,0,2.48107807818777,0.153461973288062,1.96462066103151,2.94720043288112,1.02341449813341,4.82561763430822,16.325987308949,0.154209693802656,0.177561725313127,0,0,0.116210378459959,0,0.40101294060657,0.276242966807689,0.114814448164607,1.0925470080403,0.262248829918848,0,0.15403067420883,0,0,0.211103257785751,0,0,0.215915916102139,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0.145016693914229,0,0.178064071293475,0,0.192190067365106,0.127612712494584,0.2023155617111,1.39453664789186,6.92587163027408,0,0.308033580176089,0,0,0.18532421910392,0.429374660225974,0,0.316379424718726,0.190630193923825,0,0,0,0,0.359744915166629,1.09814811894422,0.353437207037059,0,0,0,0,4.87426979262569,0,0.136499911407986,0.282810863907425,0,0,0.66343897524122,1.75380354101505,0,0,0,0.30982349809975,0.563391205064483,0.286822704408103,0.0982490410131212,0,0,7.81098250601357,3.29294892959902,0,0,0,0,0,0,0,3.36942951335251,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0.159426272728822,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0.47748896947538,0,0,0,0,0.111308705022906,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0.221158519862449,0,0,0,0,0,0.113942055847001,0,0,0,1.27600463892768,0.549585560411174,6.39641731222362,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0.277349346026277,0,0,0,0.17472666824203,0,0,0.0730893170861856,0,0.0969890164884194,0,0,0.137041924646751,0,0.189932387867636,0,0,0,0,0,0,0,0.14405479798815,0,0,0.135904206073614,0.313808538937,0.101998217636322,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,1.80149941771202,0,0,0.0824158583811665,0,0,0,0,0,0.160753148465019,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.0524545881349981,0,0.179287339332845,0.575745591958336,0,0,0,3.80099721227599,0.864221491201268,2.93928624098468,0,0.164185041498678,0.170388021785422,0.113312091520126,0,0,0,0.13223260174269,0,0.704815022316672,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0,0.110929051536852,0,0,0.124980407962107,0.758245587708239,0.570930667089935,0,0,0,0,0,0,0.757612021100357,0.251567901752575,0.889811221596536,0.686520205190771,0.151230923763239,0.621748802331122,0.443565449968902,0,0,0,1.24411862352257,0.265841714557995,0,0.450772826991655,0,0,0.363697318405119,0,0,0,0,1.03018711554838,1.01024846629776,0,0,0,0.260994291965212,0,0.231522474323834,0,0.358177682162975,0.617602894321944,0,0,0,0,0,0,0.303859956177382,0.138258436151731,0,0,0,0.655219697692825,0,0,0,0,0,0,0.184105950251841,0,0.622077260032973,0.127894371303652,0,0.157265941855896,0,0.33946505990805,0,0,0,0.636008701306837,0,0,0.352675943690684,0.6124909547064,0,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0.11796972334774,0,0,0,0,0,0,0.20170506870352,0,0,1.31017534008077,0,0,0,0.206686796501184,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| ||
|short_description=p@chr2:224862976..224862989,+ | |||
}} | }} |
Latest revision as of 07:11, 29 July 2015
Short description: | p@chr2:224862976..224862989, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:224862976..224862989, + |
Coexpression cluster: | C354_Fibroblast_Preadipocyte_Chondrocyte_chorionic_tenocyte_Synoviocyte_Smooth |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.42e-19 | 76 |
fibroblast of tunica adventitia of artery | 4.40e-14 | 4 |
fibroblast of the aortic adventitia | 4.40e-14 | 4 |
stromal cell | 1.39e-13 | 28 |
fibrocyte | 7.13e-12 | 3 |
tendon cell | 7.13e-12 | 3 |
omentum preadipocyte | 1.70e-11 | 3 |
preadipocyte | 1.46e-10 | 12 |
GAG secreting cell | 2.57e-10 | 9 |
carbohydrate secreting cell | 2.57e-10 | 9 |
multi fate stem cell | 2.09e-09 | 427 |
somatic stem cell | 3.99e-09 | 433 |
stem cell | 9.16e-09 | 441 |
connective tissue cell | 2.00e-08 | 361 |
extracellular matrix secreting cell | 2.11e-08 | 15 |
mesenchymal cell | 4.15e-08 | 354 |
fat cell | 7.42e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.24e-14 | 6 |
peritoneum | 1.24e-14 | 6 |
abdominal cavity | 1.24e-14 | 6 |
visceral peritoneum | 1.24e-14 | 6 |
artery wall | 4.40e-14 | 4 |
tunica adventitia of artery | 4.40e-14 | 4 |
adventitia | 4.40e-14 | 4 |
tunica adventitia of blood vessel | 4.40e-14 | 4 |
aorta tunica adventitia | 4.40e-14 | 4 |
aorta wall | 4.40e-14 | 4 |
cavity lining | 6.14e-14 | 12 |
serous membrane | 6.14e-14 | 12 |
dense regular connective tissue | 7.13e-12 | 3 |
tendon | 7.13e-12 | 3 |
regular connective tissue | 7.13e-12 | 3 |
organ component layer | 1.88e-11 | 66 |
perirenal fat | 4.31e-09 | 2 |
connective tissue | 1.21e-08 | 371 |
blood vessel layer | 4.41e-08 | 7 |