FFCP PHASE1:Hg19::chr2:224856692..224856705,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:224856692..224856705,- | |||
|coexpression_cluster_id=C354 | |||
|description=CAGE_peak_at_chr2:224856692..224856705,- | |description=CAGE_peak_at_chr2:224856692..224856705,- | ||
|id=chr2:224856692..224856705,- | |id=chr2:224856692..224856705,- | ||
|ontology_enrichment_celltype=CL:0000055!2.93e-14!180;CL:0000057!5.13e-11!75 | |ontology_enrichment_celltype=CL:0000055!2.93e-14!180;CL:0000057!5.13e-11!75 | ||
|ontology_enrichment_celltype_v019=CL:0000135;1.77e-15;3!CL:0000388;1.77e-15;3!CL:0002541;3.03e-15;3!CL:0000153;2.51e-13;9!CL:0000447;2.51e-13;9!CL:0000499;1.74e-12;28!CL:1000306;1.58e-11;4!CL:0002547;1.58e-11;4!CL:0000327;6.89e-08;15!CL:0000138;8.40e-08;6!CL:0002579;9.70e-08;3!CL:0000214;1.86e-07;3!CL:0000346;3.88e-07;3!CL:1000428;3.88e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000135,1.46e-15,3;CL:0000388,1.46e-15,3;CL:0002541,1.87e-15,3;CL:0000153,3.35e-13,9;CL:0000447,3.35e-13,9;CL:0000499,1.77e-12,28;CL:1000306,1.27e-11,4;CL:0002547,1.27e-11,4;CL:0000327,8.15e-08,15;CL:0002579,8.80e-08,3;CL:0000058,1.11e-07,6;CL:0000138,1.11e-07,6;CL:0000214,1.81e-07,3;CL:0000346,4.13e-07,3;CL:1000428,4.13e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060084;2.15e-15;3!DOID:127;2.15e-15;3!DOID:0060072;1.14e-11;4!DOID:1909;1.26e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.32e-15,3;DOID:127,1.32e-15,3;DOID:0060072,7.94e-12,4;DOID:1909,8.53e-11,2 | |||
|ontology_enrichment_uberon=UBERON:0003688!4.76e-09!6;UBERON:0002358!4.76e-09!6;UBERON:0003684!4.76e-09!6;UBERON:0001178!4.76e-09!6;UBERON:0004923!1.27e-08!57;UBERON:0003102!1.42e-08!95;UBERON:0002199!1.34e-07!45;UBERON:0002416!1.34e-07!45;UBERON:0002097!3.28e-07!40;UBERON:0004457!3.84e-07!12;UBERON:0000042!3.84e-07!12;UBERON:0000486!8.12e-07!82 | |ontology_enrichment_uberon=UBERON:0003688!4.76e-09!6;UBERON:0002358!4.76e-09!6;UBERON:0003684!4.76e-09!6;UBERON:0001178!4.76e-09!6;UBERON:0004923!1.27e-08!57;UBERON:0003102!1.42e-08!95;UBERON:0002199!1.34e-07!45;UBERON:0002416!1.34e-07!45;UBERON:0002097!3.28e-07!40;UBERON:0004457!3.84e-07!12;UBERON:0000042!3.84e-07!12;UBERON:0000486!8.12e-07!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0007846;1.77e-15;3!UBERON:0000043;1.77e-15;3!UBERON:0007845;1.77e-15;3!UBERON:0003124;3.03e-15;3!UBERON:0000920;3.03e-15;3!UBERON:0004457;8.96e-14;9!UBERON:0000042;8.96e-14;9!UBERON:0004797;1.58e-11;4!UBERON:0000415;1.58e-11;4!UBERON:0007240;1.58e-11;4!UBERON:0005742;1.58e-11;4!UBERON:0005734;1.58e-11;4!UBERON:0004664;1.58e-11;4!UBERON:0004663;1.58e-11;4!UBERON:0003688;3.31e-08;6!UBERON:0002358;3.31e-08;6!UBERON:0003684;3.31e-08;6!UBERON:0001178;3.31e-08;6!UBERON:0006915;1.86e-07;3!UBERON:0007616;1.86e-07;3!UBERON:0002217;1.86e-07;3!UBERON:0002018;1.86e-07;3!UBERON:0000412;3.88e-07;3!UBERON:0001992;3.88e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,1.46e-15,3;UBERON:0000043,1.46e-15,3;UBERON:0007845,1.46e-15,3;UBERON:0000920,1.87e-15,3;UBERON:0000415,1.27e-11,4;UBERON:0007240,1.27e-11,4;UBERON:0005742,1.27e-11,4;UBERON:0005734,1.27e-11,4;UBERON:0004664,1.27e-11,4;UBERON:0004663,1.27e-11,4;UBERON:0004457,2.83e-10,12;UBERON:0000042,2.83e-10,12;UBERON:0004923,9.20e-10,66;UBERON:0003688,3.24e-08,6;UBERON:0002358,3.24e-08,6;UBERON:0003684,3.24e-08,6;UBERON:0001178,3.24e-08,6;UBERON:0006915,1.81e-07,3;UBERON:0007616,1.81e-07,3;UBERON:0002217,1.81e-07,3;UBERON:0002018,1.81e-07,3;UBERON:0000412,4.13e-07,3;UBERON:0001992,4.13e-07,3;UBERON:0003124,7.11e-07,7;UBERON:0004797,8.02e-07,7 | |||
|phase1_expression=0.908391896352783,0.214100523890983,0.422863212287913,3.00219895059391,0.446961094427288,1.74467704820074,2.53299878168311,0,0,0,0,0,0,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,1.44575660953827,0,1.01392563272577,0,4.37971383272372,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.4666914686485,1.77282716330412,0.264818361626438,10.8997915884549,1.41867352879343,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0.298897361103602,0.117434498643765,0,0,0.408308342509787,0.245668634623536,0,0,0.989067717114227,0,0,0,0.125118519871964,0,0,0,0.751190294532984,0,0.358779271377724,0.213557388818567,0.635795703478686,0.600182192168805,0.309157587715317,0.257640540045629,0.18611685633159,0,0,0,0.552299391853796,0,1.06502877754984,0.503760491138201,0,0.57978255948989,0.272746120590835,0.286804595389004,0,0,0,0,0,0,1.56449532329816,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0.201057944823262,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0.190493682876507,0.763976851116555,0,0,0.308482478109971,0,0,0,0,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0.266422179016099,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30303176000821,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0,0.207970861530807,0.178428988797162,0.315404830067869,0.117141414992713,0,2.27407504055985,0,0,0,1.73767228936166,0,0,0,0,0,0,0,0.30239029332968,3.2254015016441,0.153461973288062,0,2.69092213436972,0.511707249066704,4.98647155545183,0,0,0.177561725313127,0.0821271560138091,0.519254429183621,0,0,1.80455823272956,0.184161977871793,0,0.364182336013434,0.262248829918848,0,0,0,1.46139224653261,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0.096670718292122,0,0,0.137836572484531,0,0,0,0,0.165284915360978,0.768760269460425,0,0.30347334256665,0.464845549297286,2.83331112147576,0.6970372701606,0,0,0,0.37064843820784,0,0,0,0,0,0,0,0.78494864019923,0,0,0.235624804691373,0,0,0,0,1.70599442741899,0,0,0.565621727814851,1.13008116620243,0.551365343546124,0.66343897524122,1.31535265576129,0,0,0,0.30982349809975,0.281695602532241,0.143411352204052,0,0,0,3.16661452946496,1.64647446479951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0.222617410045812,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,1.91400695839152,2.56473261525214,2.66517388009317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0.126373159256976,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288950589901519,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0.720599767084807,0,0,0,0.0674035438541849,0,0,0,0,0.803765742325096,0.137539436597234,0,0,0,0.0607495566580247,0,0,0,0,0.537862017998534,0,0,0,0,3.80099721227599,1.72844298240254,2.93928624098468,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0.0620964029413835,0,0,1.97143852804142,2.28372266835974,0,0,0,0.149254802886874,0,0,0.189403005275089,0,0,0.457680136793847,0,0.310874401165561,0.295710299979268,0.159296767163702,0.449803112163605,0,3.7323558705677,0,0,0,0,0.813741466409323,0,0.107410557042488,0,0,0,1.03018711554838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0.169732529954025,0,0,0,0,0.0788617450012534,0,1.05802783107205,0,0,0,0.159633859057151,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0.443511850813194,0,0,0.0679697329768317,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.170426809518315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,1.0195626881269,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60396512716726,4.15958065768276,1.73050624849516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727345877715,0,0.359300808426348,0,0,0.406896178315738,0,0,0 | |phase1_expression=0.908391896352783,0.214100523890983,0.422863212287913,3.00219895059391,0.446961094427288,1.74467704820074,2.53299878168311,0,0,0,0,0,0,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,1.44575660953827,0,1.01392563272577,0,4.37971383272372,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.4666914686485,1.77282716330412,0.264818361626438,10.8997915884549,1.41867352879343,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0.298897361103602,0.117434498643765,0,0,0.408308342509787,0.245668634623536,0,0,0.989067717114227,0,0,0,0.125118519871964,0,0,0,0.751190294532984,0,0.358779271377724,0.213557388818567,0.635795703478686,0.600182192168805,0.309157587715317,0.257640540045629,0.18611685633159,0,0,0,0.552299391853796,0,1.06502877754984,0.503760491138201,0,0.57978255948989,0.272746120590835,0.286804595389004,0,0,0,0,0,0,1.56449532329816,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0.201057944823262,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0.190493682876507,0.763976851116555,0,0,0.308482478109971,0,0,0,0,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0.266422179016099,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30303176000821,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0,0.207970861530807,0.178428988797162,0.315404830067869,0.117141414992713,0,2.27407504055985,0,0,0,1.73767228936166,0,0,0,0,0,0,0,0.30239029332968,3.2254015016441,0.153461973288062,0,2.69092213436972,0.511707249066704,4.98647155545183,0,0,0.177561725313127,0.0821271560138091,0.519254429183621,0,0,1.80455823272956,0.184161977871793,0,0.364182336013434,0.262248829918848,0,0,0,1.46139224653261,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0.096670718292122,0,0,0.137836572484531,0,0,0,0,0.165284915360978,0.768760269460425,0,0.30347334256665,0.464845549297286,2.83331112147576,0.6970372701606,0,0,0,0.37064843820784,0,0,0,0,0,0,0,0.78494864019923,0,0,0.235624804691373,0,0,0,0,1.70599442741899,0,0,0.565621727814851,1.13008116620243,0.551365343546124,0.66343897524122,1.31535265576129,0,0,0,0.30982349809975,0.281695602532241,0.143411352204052,0,0,0,3.16661452946496,1.64647446479951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0.222617410045812,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,1.91400695839152,2.56473261525214,2.66517388009317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0.126373159256976,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288950589901519,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0.720599767084807,0,0,0,0.0674035438541849,0,0,0,0,0.803765742325096,0.137539436597234,0,0,0,0.0607495566580247,0,0,0,0,0.537862017998534,0,0,0,0,3.80099721227599,1.72844298240254,2.93928624098468,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0.0620964029413835,0,0,1.97143852804142,2.28372266835974,0,0,0,0.149254802886874,0,0,0.189403005275089,0,0,0.457680136793847,0,0.310874401165561,0.295710299979268,0.159296767163702,0.449803112163605,0,3.7323558705677,0,0,0,0,0.813741466409323,0,0.107410557042488,0,0,0,1.03018711554838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0.169732529954025,0,0,0,0,0.0788617450012534,0,1.05802783107205,0,0,0,0.159633859057151,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0.443511850813194,0,0,0.0679697329768317,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.170426809518315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,1.0195626881269,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60396512716726,4.15958065768276,1.73050624849516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727345877715,0,0.359300808426348,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr2:224856692..224856705,- | |short_description=p@chr2:224856692..224856705,- | ||
}} | }} |
Latest revision as of 07:11, 29 July 2015
Short description: | p@chr2:224856692..224856705, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:224856692..224856705, - |
Coexpression cluster: | C354_Fibroblast_Preadipocyte_Chondrocyte_chorionic_tenocyte_Synoviocyte_Smooth |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibrocyte | 1.46e-15 | 3 |
tendon cell | 1.46e-15 | 3 |
chorionic membrane mesenchymal stem cell | 1.87e-15 | 3 |
GAG secreting cell | 3.35e-13 | 9 |
carbohydrate secreting cell | 3.35e-13 | 9 |
stromal cell | 1.77e-12 | 28 |
fibroblast of tunica adventitia of artery | 1.27e-11 | 4 |
fibroblast of the aortic adventitia | 1.27e-11 | 4 |
extracellular matrix secreting cell | 8.15e-08 | 15 |
omentum preadipocyte | 8.80e-08 | 3 |
chondroblast | 1.11e-07 | 6 |
chondrocyte | 1.11e-07 | 6 |
synovial cell | 1.81e-07 | 3 |
hair follicle dermal papilla cell | 4.13e-07 | 3 |
stem cell of epidermis | 4.13e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 1.46e-15 | 3 |
tendon | 1.46e-15 | 3 |
regular connective tissue | 1.46e-15 | 3 |
egg chorion | 1.87e-15 | 3 |
artery wall | 1.27e-11 | 4 |
tunica adventitia of artery | 1.27e-11 | 4 |
adventitia | 1.27e-11 | 4 |
tunica adventitia of blood vessel | 1.27e-11 | 4 |
aorta tunica adventitia | 1.27e-11 | 4 |
aorta wall | 1.27e-11 | 4 |
cavity lining | 2.83e-10 | 12 |
serous membrane | 2.83e-10 | 12 |
organ component layer | 9.20e-10 | 66 |
omentum | 3.24e-08 | 6 |
peritoneum | 3.24e-08 | 6 |
abdominal cavity | 3.24e-08 | 6 |
visceral peritoneum | 3.24e-08 | 6 |
stratified squamous epithelium | 1.81e-07 | 3 |
layer of synovial tissue | 1.81e-07 | 3 |
synovial joint | 1.81e-07 | 3 |
synovial membrane of synovial joint | 1.81e-07 | 3 |
dermal papilla | 4.13e-07 | 3 |
papillary layer of dermis | 4.13e-07 | 3 |
chorion | 7.11e-07 | 7 |
blood vessel layer | 8.02e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.32e-15 | 3 |
leiomyoma | 1.32e-15 | 3 |
benign neoplasm | 7.94e-12 | 4 |
melanoma | 8.53e-11 | 2 |