FFCP PHASE1:Hg19::chr2:224856621..224856634,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr2:224856621..224856634,- | |||
|coexpression_cluster_id=C354 | |||
|description=CAGE_peak_at_chr2:224856621..224856634,- | |||
|id=chr2:224856621..224856634,- | |||
|ontology_enrichment_celltype=CL:0000055!3.80e-22!180;CL:0000057!4.92e-18!75;CL:0002620!3.97e-10!23;CL:0002334!4.11e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0000135;9.39e-12;3!CL:0000388;9.39e-12;3!CL:0002541;4.10e-11;3!CL:0002579;7.06e-11;3!CL:0000153;1.41e-09;9!CL:0000447;1.41e-09;9!CL:1000306;1.03e-08;4!CL:0002547;1.03e-08;4!CL:0000499;1.57e-08;28!CL:0000056;3.59e-08;4!CL:0002593;1.49e-07;2!CL:0002334;6.86e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.37e-13,76;CL:0000135,9.43e-12,3;CL:0000388,9.43e-12,3;CL:0002541,4.80e-11,3;CL:0002579,5.69e-11,3;CL:0000153,1.55e-09,9;CL:0000447,1.55e-09,9;CL:1000306,1.06e-08,4;CL:0002547,1.06e-08,4;CL:0000499,1.45e-08,28;CL:0000515,3.82e-08,4;CL:0002593,1.89e-07,2;CL:0000048,3.58e-07,427;CL:0000723,6.31e-07,433;CL:0002334,7.38e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000515;3.59e-08;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;3.34e-11;3!DOID:127;3.34e-11;3!DOID:0060072;1.69e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,2.34e-11,3;DOID:127,2.34e-11,3;DOID:0060072,1.30e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0002199!2.07e-07!45;UBERON:0002416!2.07e-07!45;UBERON:0002097!6.15e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;3.36e-13;9!UBERON:0000042;3.36e-13;9!UBERON:0007846;9.39e-12;3!UBERON:0000043;9.39e-12;3!UBERON:0007845;9.39e-12;3!UBERON:0003124;4.10e-11;3!UBERON:0000920;4.10e-11;3!UBERON:0003688;4.00e-09;6!UBERON:0002358;4.00e-09;6!UBERON:0003684;4.00e-09;6!UBERON:0001178;4.00e-09;6!UBERON:0004797;1.03e-08;4!UBERON:0000415;1.03e-08;4!UBERON:0007240;1.03e-08;4!UBERON:0005742;1.03e-08;4!UBERON:0005734;1.03e-08;4!UBERON:0004664;1.03e-08;4!UBERON:0004663;1.03e-08;4!UBERON:0005406;1.75e-08;2!UBERON:0002456;1.49e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,9.43e-12,3;UBERON:0000043,9.43e-12,3;UBERON:0007845,9.43e-12,3;UBERON:0000920,4.80e-11,3;UBERON:0004457,1.09e-09,12;UBERON:0000042,1.09e-09,12;UBERON:0003688,4.66e-09,6;UBERON:0002358,4.66e-09,6;UBERON:0003684,4.66e-09,6;UBERON:0001178,4.66e-09,6;UBERON:0000415,1.06e-08,4;UBERON:0007240,1.06e-08,4;UBERON:0005742,1.06e-08,4;UBERON:0005734,1.06e-08,4;UBERON:0004664,1.06e-08,4;UBERON:0004663,1.06e-08,4;UBERON:0005406,1.75e-08,2;UBERON:0002456,1.89e-07,2;UBERON:0004923,5.06e-07,66 | |||
|phase1_expression=0.726713517082227,1.2846031433459,0.281908808191942,1.0007329835313,0.446961094427288,8.72338524100369,0,0,0.261185628199839,0,0,0,0,0.123766352960047,1.32558950291166,1.34465029290355,0,0,0,0,0.408001382488506,0.313454721478088,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00267582127178,2.75208386025565,0.795285947051099,14.1124112387764,0,0,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.96971951695318,2.27934920996244,0.794455084879313,11.7603014507014,4.61068896857864,1.68203280042692,0,0.24666754841716,0,0,0.163461903113459,0,0,0,0,0.570471821544449,2.09228152772521,0.704606991862589,0.161872944368132,0.140450806702248,0,0.122834317311768,0.103325781175765,0,0.741800787835671,0.910161361938026,0,0,0,0,0,0.919463387397059,1.35214253015937,0.340296549480063,0.538168907066586,0.213557388818567,0.847727604638247,2.10063767259082,1.8549455262919,1.28820270022815,0.18611685633159,0.337552664482532,0.584622030967192,0.252433774244115,0.368199594569197,1.2931684545505,4.61512470271599,1.30977727695932,0,0,0,0,0,0,0.464775771478074,0.310983165046111,0.504641701751257,0,0,3.21620469096443,0,0,0,0.118306800039844,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0.904760751704678,0.0925884451585296,0.325808305310325,0,0,0.115930404975077,0.117408694235822,0.144366447761074,0.462985512576611,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,1.23392991243988,0.901029173531752,0,0,0,0.07333828582095,0.258543431515556,0,0,0.797814349754612,0,0,0,0,0,0.542621605391443,0,0,0,0,1.50719688529793,0,0.199945982364114,0,0,0,0.239624855491583,0,1.42636905040718,2.02693829334611,3.49309748335652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542530047399471,0.207970861530807,1.96271887676878,0.473107245101804,1.17141414992713,0.300946099727719,0,0,0,0.184369168541703,1.99832313276591,0,0,0,0,0,0,0,0,0.992431231275107,0.153461973288062,0.561320188866147,1.66580894032411,2.55853624533352,5.30817939773905,7.42090332224955,0.154209693802656,0.887808626565635,0,1.03850885836724,0.232420756919918,0,3.60911646545913,0.276242966807689,0,0.728364672026868,0.786746489756545,0,0.308061348417659,0,0,0,0,0,0.215915916102139,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.412164046590889,0.366277859273374,0,0,0,1.6068392984416,0.193341436584244,0.154048617114644,0,0,0.107420244868274,0.145016693914229,0.170453254832202,0,0.165284915360978,0.960950336825531,0,0.50578890427775,0.464845549297286,4.7221852024596,0,0.308033580176089,0,0,0,0.286249773483982,0,0,0,0,0,0,0.78494864019923,0,1.09814811894422,0.471249609382746,0.404364963146632,0,0,0,2.68084838594413,1.05650146756755,0,0.565621727814851,1.13008116620243,0.551365343546124,1.32687795048244,0,0,0,0,0.6196469961995,0.563391205064483,0.143411352204052,0.0982490410131212,0,0.354761064070598,9.07762831779956,2.63435914367922,0,0,0.0962221127255121,0,0,0.0941438007767792,0,1.68471475667626,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.95497793895076,0.296964680832639,0,0,0,0.222617410045812,0,0,0,0,0,0,0,0,0,0,0,0.394573622547734,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0.241192877250816,0,0.331737779793674,0.295547618953547,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,3.82801391678303,1.19076871422421,9.59462596833542,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0.837847203816763,0,0,0.199679000498991,0,0,0,0.720599767084807,0,0,0.0824158583811665,0.0674035438541849,0,0,0,0,0.482259445395058,0,0.415440338029185,0,0,0.0607495566580247,0,0.0788057072991982,0.0524545881349981,0,2.15144807199414,0.191915197319445,0,0,0,5.97299561929084,1.72844298240254,8.49127136284464,0,0,0.511164065356265,0.113312091520126,0,0,0.258565912723101,0.66116300871345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.610131324509816,0.250381861413,0,0.221858103073705,0,0,0,0.303298235083296,0.285465333544967,0,0,0,0.298509605773748,0.233713309847224,0,2.08343305802598,1.76097531226803,0,0.915360273587694,0.151230923763239,2.17612080815893,0.887130899937803,0.159296767163702,0,0.155262956876259,5.80588690977198,0.53168342911599,0.521745061811734,0.450772826991655,0,0,0.363697318405119,0.214821114084977,0,0.796191777397232,0,2.74716564146234,0,0,0,0,0.260994291965212,0,0,0,0.358177682162975,0,0.219284049578707,0.353378291891762,0.38582807654183,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0.247871528518004,0,0.636008701306837,0,0,0.705351887381368,0.6124909547064,0.0642292250964595,0,0.319267718114302,0.205116364240755,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0.818859587550484,0,0.0675375846183947,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0.79832133146375,0,0.857440047187092,0,0.263091094251396,0,0,0.078493092850514,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.681707238073262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0.196308467114945,0,0.4226557275834,0,0,0.0644578879735772,0,0,0,0,0,0,0.286679166302903,0,0.203974470572744,0,0,7.81189538150178,6.47045880083986,5.62414530760926,0,0,0,0,0,0,0,0.227336094654718,0.267964130156178,0,0.103432995861895,0,0,0.0645889098360061,0,0.112131862580613,0,0,0,0,0,0.215166616178029,0,0,0,0,0.718601616852695,0,0,0.406896178315738,0,0,0 | |||
|short_description=p@chr2:224856621..224856634,- | |||
}} |
Latest revision as of 07:11, 29 July 2015
Short description: | p@chr2:224856621..224856634, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:224856621..224856634, - |
Coexpression cluster: | C354_Fibroblast_Preadipocyte_Chondrocyte_chorionic_tenocyte_Synoviocyte_Smooth |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.37e-13 | 76 |
fibrocyte | 9.43e-12 | 3 |
tendon cell | 9.43e-12 | 3 |
chorionic membrane mesenchymal stem cell | 4.80e-11 | 3 |
omentum preadipocyte | 5.69e-11 | 3 |
GAG secreting cell | 1.55e-09 | 9 |
carbohydrate secreting cell | 1.55e-09 | 9 |
fibroblast of tunica adventitia of artery | 1.06e-08 | 4 |
fibroblast of the aortic adventitia | 1.06e-08 | 4 |
stromal cell | 1.45e-08 | 28 |
skeletal muscle myoblast | 3.82e-08 | 4 |
smooth muscle cell of the internal thoracic artery | 1.89e-07 | 2 |
multi fate stem cell | 3.58e-07 | 427 |
somatic stem cell | 6.31e-07 | 433 |
preadipocyte | 7.38e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 9.43e-12 | 3 |
tendon | 9.43e-12 | 3 |
regular connective tissue | 9.43e-12 | 3 |
egg chorion | 4.80e-11 | 3 |
cavity lining | 1.09e-09 | 12 |
serous membrane | 1.09e-09 | 12 |
omentum | 4.66e-09 | 6 |
peritoneum | 4.66e-09 | 6 |
abdominal cavity | 4.66e-09 | 6 |
visceral peritoneum | 4.66e-09 | 6 |
artery wall | 1.06e-08 | 4 |
tunica adventitia of artery | 1.06e-08 | 4 |
adventitia | 1.06e-08 | 4 |
tunica adventitia of blood vessel | 1.06e-08 | 4 |
aorta tunica adventitia | 1.06e-08 | 4 |
aorta wall | 1.06e-08 | 4 |
perirenal fat | 1.75e-08 | 2 |
internal thoracic artery | 1.89e-07 | 2 |
organ component layer | 5.06e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 2.34e-11 | 3 |
leiomyoma | 2.34e-11 | 3 |
benign neoplasm | 1.30e-08 | 4 |