FFCP PHASE1:Hg19::chr2:188415603..188415621,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:188415603..188415621,- | |||
|description=CAGE_peak_at_chr2:188415603..188415621,- | |description=CAGE_peak_at_chr2:188415603..188415621,- | ||
|id=chr2:188415603..188415621,- | |id=chr2:188415603..188415621,- | ||
|ontology_enrichment_celltype=CL:0000187!9.13e-08!54;CL:0000746!2.65e-07!3;CL:0000513!2.65e-07!3;CL:0000680!4.22e-07!57;CL:0000056!4.22e-07!57;CL:0000355!4.22e-07!57 | |ontology_enrichment_celltype=CL:0000187!9.13e-08!54;CL:0000746!2.65e-07!3;CL:0000513!2.65e-07!3;CL:0000680!4.22e-07!57;CL:0000056!4.22e-07!57;CL:0000355!4.22e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0000746;7.54e-24;3!CL:0000737;4.85e-18;4!CL:0002195;1.27e-16;2!CL:0002571;1.27e-16;2!CL:0002593;1.43e-15;2!CL:0002494;1.13e-11;16!CL:0000222;1.22e-08;1!CL:1000306;3.10e-08;4!CL:0002547;3.10e-08;4!CL:0002595;9.44e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000746,6.25e-24,3;CL:0000513,6.25e-24,3;CL:0000737,4.22e-18,4;CL:0002195,1.18e-16,2;CL:0002571,1.18e-16,2;CL:0002593,3.00e-15,2;CL:0002494,9.79e-12,16;CL:1000306,3.86e-08,4;CL:0002547,3.86e-08,4 | |||
|ontology_enrichment_development_v019=CL:0000513;7.54e-24;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;4.02e-09;1!DOID:4549;4.02e-09;1!DOID:5861;4.02e-09;1!DOID:6496;4.02e-09;1!DOID:5662;1.22e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,4.52e-09,1;DOID:4549,4.52e-09,1;DOID:5861,4.52e-09,1;DOID:6496,4.52e-09,1;DOID:5662,1.65e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0001009!9.44e-10!113;UBERON:0000490!3.29e-09!138;UBERON:0007100!8.04e-09!27;UBERON:0004535!1.00e-08!110;UBERON:0004872!2.30e-08!84;UBERON:0002385!1.25e-07!63;UBERON:0001015!1.25e-07!63;UBERON:0000383!1.25e-07!63;UBERON:0000948!2.36e-07!24;UBERON:0005498!2.36e-07!24;UBERON:0004140!2.36e-07!24;UBERON:0009881!2.36e-07!24;UBERON:0004141!2.36e-07!24;UBERON:0003084!2.36e-07!24;UBERON:0007005!2.36e-07!24;UBERON:0004139!2.36e-07!24;UBERON:0004291!2.36e-07!24;UBERON:0001134!4.59e-07!61;UBERON:0002036!4.59e-07!61;UBERON:0003082!4.59e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002456;1.43e-15;2!UBERON:0000948;1.96e-08;22!UBERON:0004797;3.10e-08;4!UBERON:0000415;3.10e-08;4!UBERON:0007240;3.10e-08;4!UBERON:0005742;3.10e-08;4!UBERON:0005734;3.10e-08;4!UBERON:0004664;3.10e-08;4!UBERON:0004663;3.10e-08;4!UBERON:0007100;2.15e-07;25!UBERON:0003834;9.44e-07;5!UBERON:0001533;9.44e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002456,3.00e-15,2;UBERON:0003914,2.44e-08,117;UBERON:0000415,3.86e-08,4;UBERON:0007240,3.86e-08,4;UBERON:0005742,3.86e-08,4;UBERON:0005734,3.86e-08,4;UBERON:0004664,3.86e-08,4;UBERON:0004663,3.86e-08,4;UBERON:0000948,9.42e-08,24;UBERON:0005498,9.42e-08,24;UBERON:0004140,9.42e-08,24;UBERON:0009881,9.42e-08,24;UBERON:0004141,9.42e-08,24;UBERON:0003084,9.42e-08,24;UBERON:0007005,9.42e-08,24;UBERON:0004139,9.42e-08,24;UBERON:0004291,9.42e-08,24;UBERON:0004872,2.91e-07,83;UBERON:0007100,7.28e-07,27 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,7.37770945674,2.9408389224012,0,0,0,0,0,0,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0.402829317109147,0,0.24406205754817,0.367663080345869,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0,1.45650098894541,1.14734648299525,0,0,0,0.24666754841716,1.8672662123986,0.67355336034844,0,0,0.576175924479999,0,0,0,0,0,0,0,0.204154171254893,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0.794025282120147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234817388471643,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,7.57783366388182,0,0,0,4.6200953336531,0,0.301439377059586,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.803701137152247,0.364182336013434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0,0,0,0.0890320356467374,0,0,0,0,0,1.5740617341532,0,0.308033580176089,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0,0.318203247925937,0,0.179872457583315,0.54907405947211,0.353437207037059,0.202182481573316,0,0,0,1.21856744815642,1.05650146756755,0.136499911407986,0.989838023675989,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0.764637207142375,0.569647187174163,0.238231775457789,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0.606802608747567,0,0,0,0.296964680832639,0,0,0,0.222617410045812,0,0,0,0,0,0,0,0.622079175323615,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76915129006678,0,0,0,0,0,0,0,0,0,2.91336455440911,0,0,0,0.063186579628488,0,0,0,0.661983911750998,0,0,0,0.554698692052555,0,0,0,0.17472666824203,0,0,0,0,0.484945082442097,4.23629408119201,0,0,0,0,0,0,0,0,0,0,0,0,4.47309128035557,0,1.49494626680975,2.61507115780833,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0.223171457441873,0.201550417460179,0.360299883542404,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,1.79287339332845,0,0.714695326373367,0,0,1.08599920350743,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,1.60181118851542,0.314408610199332,0.414239055347196,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,1.20984739010591,0,0,0,0,0,0.829412415681711,0.53168342911599,0,0.150257608997218,0.380805212168795,0,0.181848659202559,0,0,0,1.20008329398946,0,0,1.26184898228651,0.192619830407303,0,0,0,0,0,0,0,0.438568099157414,0,0,0.506827321959218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.513833800771676,0,0,0,0,0,0,0,0,0,0,0,0,0.690359926060101,0,0,0,0,0,0.982631505060581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354809480650555,0,1.20041606606193,0,0,1.65471377237555,0,0,0,0,0,0,0,0,0,0.23248285073625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,2.08370226891451,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0.215166616178029,0,0,1.92109222579888,0,0.269475606319761,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,7.37770945674,2.9408389224012,0,0,0,0,0,0,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0.402829317109147,0,0.24406205754817,0.367663080345869,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0,1.45650098894541,1.14734648299525,0,0,0,0.24666754841716,1.8672662123986,0.67355336034844,0,0,0.576175924479999,0,0,0,0,0,0,0,0.204154171254893,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0.794025282120147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234817388471643,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,7.57783366388182,0,0,0,4.6200953336531,0,0.301439377059586,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.803701137152247,0.364182336013434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0,0,0,0.0890320356467374,0,0,0,0,0,1.5740617341532,0,0.308033580176089,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0,0.318203247925937,0,0.179872457583315,0.54907405947211,0.353437207037059,0.202182481573316,0,0,0,1.21856744815642,1.05650146756755,0.136499911407986,0.989838023675989,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0.764637207142375,0.569647187174163,0.238231775457789,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0.606802608747567,0,0,0,0.296964680832639,0,0,0,0.222617410045812,0,0,0,0,0,0,0,0.622079175323615,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76915129006678,0,0,0,0,0,0,0,0,0,2.91336455440911,0,0,0,0.063186579628488,0,0,0,0.661983911750998,0,0,0,0.554698692052555,0,0,0,0.17472666824203,0,0,0,0,0.484945082442097,4.23629408119201,0,0,0,0,0,0,0,0,0,0,0,0,4.47309128035557,0,1.49494626680975,2.61507115780833,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0.223171457441873,0.201550417460179,0.360299883542404,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,1.79287339332845,0,0.714695326373367,0,0,1.08599920350743,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,1.60181118851542,0.314408610199332,0.414239055347196,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,1.20984739010591,0,0,0,0,0,0.829412415681711,0.53168342911599,0,0.150257608997218,0.380805212168795,0,0.181848659202559,0,0,0,1.20008329398946,0,0,1.26184898228651,0.192619830407303,0,0,0,0,0,0,0,0.438568099157414,0,0,0.506827321959218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.513833800771676,0,0,0,0,0,0,0,0,0,0,0,0,0.690359926060101,0,0,0,0,0,0.982631505060581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354809480650555,0,1.20041606606193,0,0,1.65471377237555,0,0,0,0,0,0,0,0,0,0.23248285073625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,2.08370226891451,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0.215166616178029,0,0,1.92109222579888,0,0.269475606319761,0,0,0,0,0,0 | ||
|short_description=p@chr2:188415603..188415621,- | |short_description=p@chr2:188415603..188415621,- | ||
}} | }} |
Latest revision as of 04:12, 29 July 2015
Short description: | p@chr2:188415603..188415621, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:188415603..188415621, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiac muscle cell | 6.25e-24 | 3 |
cardiac muscle myoblast | 6.25e-24 | 3 |
striated muscle cell | 4.22e-18 | 4 |
hepatic stem cell | 1.18e-16 | 2 |
hepatic mesenchymal stem cell | 1.18e-16 | 2 |
smooth muscle cell of the internal thoracic artery | 3.00e-15 | 2 |
cardiocyte | 9.79e-12 | 16 |
fibroblast of tunica adventitia of artery | 3.86e-08 | 4 |
fibroblast of the aortic adventitia | 3.86e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
internal thoracic artery | 3.00e-15 | 2 |
epithelial tube | 2.44e-08 | 117 |
artery wall | 3.86e-08 | 4 |
tunica adventitia of artery | 3.86e-08 | 4 |
adventitia | 3.86e-08 | 4 |
tunica adventitia of blood vessel | 3.86e-08 | 4 |
aorta tunica adventitia | 3.86e-08 | 4 |
aorta wall | 3.86e-08 | 4 |
heart | 9.42e-08 | 24 |
primitive heart tube | 9.42e-08 | 24 |
primary heart field | 9.42e-08 | 24 |
anterior lateral plate mesoderm | 9.42e-08 | 24 |
heart tube | 9.42e-08 | 24 |
heart primordium | 9.42e-08 | 24 |
cardiac mesoderm | 9.42e-08 | 24 |
cardiogenic plate | 9.42e-08 | 24 |
heart rudiment | 9.42e-08 | 24 |
splanchnic layer of lateral plate mesoderm | 2.91e-07 | 83 |
primary circulatory organ | 7.28e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 4.52e-09 | 1 |
extraosseous chondrosarcoma | 4.52e-09 | 1 |
myxoid chondrosarcoma | 4.52e-09 | 1 |
extraskeletal myxoid chondrosarcoma | 4.52e-09 | 1 |
pleomorphic carcinoma | 1.65e-08 | 1 |