FFCP PHASE1:Hg19::chr2:177042702..177042725,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=115bp_to_uc002uku.2_5end | |association_with_transcript=115bp_to_uc002uku.2_5end | ||
|cluster_id=chr2:177042702..177042725,- | |||
|description=CAGE_peak_2_at_uc002uku.2_5end | |description=CAGE_peak_2_at_uc002uku.2_5end | ||
|id=chr2:177042702..177042725,- | |id=chr2:177042702..177042725,- | ||
|ontology_enrichment_celltype=CL:0002139!2.16e-16!24;CL:0000115!1.36e-12!35;CL:0002078!2.97e-11!44;CL:1000507!2.56e-10!12;CL:1000494!2.56e-10!12;CL:1000449!3.34e-10!16;CL:0005020!5.07e-10!6;CL:0002138!5.07e-10!6;CL:0005022!5.07e-10!6;CL:0000066!5.27e-10!254;CL:0002543!5.31e-10!6;CL:0000071!3.25e-09!18;CL:0002546!3.25e-09!18;CL:1000497!5.90e-09!18;CL:0002518!5.90e-09!18;CL:0000242!9.21e-09!2;CL:0000076!1.75e-08!62;CL:0000213!9.52e-07!57;CL:0000215!9.52e-07!57 | |ontology_enrichment_celltype=CL:0002139!2.16e-16!24;CL:0000115!1.36e-12!35;CL:0002078!2.97e-11!44;CL:1000507!2.56e-10!12;CL:1000494!2.56e-10!12;CL:1000449!3.34e-10!16;CL:0005020!5.07e-10!6;CL:0002138!5.07e-10!6;CL:0005022!5.07e-10!6;CL:0000066!5.27e-10!254;CL:0002543!5.31e-10!6;CL:0000071!3.25e-09!18;CL:0002546!3.25e-09!18;CL:1000497!5.90e-09!18;CL:0002518!5.90e-09!18;CL:0000242!9.21e-09!2;CL:0000076!1.75e-08!62;CL:0000213!9.52e-07!57;CL:0000215!9.52e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:1001319;2.58e-34;1!CL:1000600;2.58e-34;1!CL:0002144;2.89e-12;3!CL:0000071;2.70e-08;18!CL:0000082;5.35e-08;19!CL:0002543;8.97e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:1001319,2.58e-34,1;CL:1000600,2.58e-34,1;CL:0002144,3.24e-12,3;CL:0000071,2.70e-08,18;CL:0002546,2.70e-08,18;CL:0000082,5.35e-08,19;CL:0002543,8.48e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;2.70e-08;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3905;9.04e-16;9!DOID:4556;2.31e-12;3!DOID:1324;7.09e-10;15!DOID:5409;1.12e-09;4!DOID:0050615;2.55e-09;16!DOID:3908;6.13e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3905,9.04e-16,9;DOID:4556,2.31e-12,3;DOID:1324,7.09e-10,15;DOID:5409,1.12e-09,4;DOID:0050615,2.55e-09,16;DOID:3908,6.13e-08,5 | |||
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|ontology_enrichment_uberon_v019=UBERON:0004645;2.58e-34;1!UBERON:0001256;2.58e-34;1!UBERON:0001259;2.58e-34;1!UBERON:0001255;6.48e-18;2!UBERON:0001556;6.48e-18;2!UBERON:0010523;2.89e-12;3!UBERON:0001915;2.89e-12;3!UBERON:0001982;2.89e-12;3!UBERON:0005911;7.07e-10;36!UBERON:0004638;2.70e-08;18!UBERON:0001986;2.70e-08;18!UBERON:0004852;2.70e-08;18!UBERON:0004802;5.35e-08;19!UBERON:0000115;5.35e-08;19!UBERON:0000365;5.73e-08;5!UBERON:0002048;4.94e-07;22!UBERON:0004807;4.94e-07;22!UBERON:0000117;4.94e-07;22!UBERON:0000171;4.94e-07;22!UBERON:0000170;4.94e-07;22!UBERON:0000487;5.91e-07;22!UBERON:0005910;7.58e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,2.58e-34,1;UBERON:0001256,2.58e-34,1;UBERON:0001259,2.58e-34,1;UBERON:0001255,6.48e-18,2;UBERON:0001556,6.48e-18,2;UBERON:0010523,3.24e-12,3;UBERON:0001915,3.24e-12,3;UBERON:0001982,3.24e-12,3;UBERON:0004638,2.70e-08,18;UBERON:0001986,2.70e-08,18;UBERON:0004852,2.70e-08,18;UBERON:0004802,5.35e-08,19;UBERON:0000115,5.35e-08,19;UBERON:0000365,5.73e-08,5;UBERON:0002048,4.94e-07,22;UBERON:0000117,4.94e-07,22;UBERON:0000171,4.94e-07,22;UBERON:0000170,4.94e-07,22;UBERON:0005597,4.94e-07,22;UBERON:0000118,4.94e-07,22;UBERON:0000487,5.91e-07,22;UBERON:0005910,7.58e-07,6 | |||
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| ||
|short_description=p2@uc002uku.2 | |short_description=p2@uc002uku.2 | ||
}} | }} |
Latest revision as of 02:48, 29 July 2015
Short description: | p2@uc002uku.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_uc002uku.2_5end |
Coexpression cluster: | NA |
Association with transcript: | 115bp_to_uc002uku.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bladder cell | 2.58e-34 | 1 |
lower urinary tract cell | 2.58e-34 | 1 |
capillary endothelial cell | 3.24e-12 | 3 |
blood vessel endothelial cell | 2.70e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.70e-08 | 18 |
epithelial cell of lung | 5.35e-08 | 19 |
vein endothelial cell | 8.48e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 2.58e-34 | 1 |
wall of urinary bladder | 2.58e-34 | 1 |
mucosa of urinary bladder | 2.58e-34 | 1 |
urinary bladder | 6.48e-18 | 2 |
lower urinary tract | 6.48e-18 | 2 |
microcirculatory vessel | 3.24e-12 | 3 |
endothelium of capillary | 3.24e-12 | 3 |
capillary | 3.24e-12 | 3 |
blood vessel endothelium | 2.70e-08 | 18 |
endothelium | 2.70e-08 | 18 |
cardiovascular system endothelium | 2.70e-08 | 18 |
respiratory tract epithelium | 5.35e-08 | 19 |
lung epithelium | 5.35e-08 | 19 |
urothelium | 5.73e-08 | 5 |
lung | 4.94e-07 | 22 |
respiratory tube | 4.94e-07 | 22 |
respiration organ | 4.94e-07 | 22 |
pair of lungs | 4.94e-07 | 22 |
lung primordium | 4.94e-07 | 22 |
lung bud | 4.94e-07 | 22 |
simple squamous epithelium | 5.91e-07 | 22 |
transitional epithelium | 7.58e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
lung carcinoma | 9.04e-16 | 9 |
lung large cell carcinoma | 2.31e-12 | 3 |
lung cancer | 7.09e-10 | 15 |
lung small cell carcinoma | 1.12e-09 | 4 |
respiratory system cancer | 2.55e-09 | 16 |
non-small cell lung carcinoma | 6.13e-08 | 5 |