FFCP PHASE1:Hg19::chr2:173352091..173352120,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:173352091..173352120,+ to FFCP PHASE1:Hg19::chr2:173352091..173352120,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:173352091..173352120,+ | |||
|description=CAGE_peak_at_chr2:173352091..173352120,+ | |||
|id=chr2:173352091..173352120,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.19e-19!254;CL:0002076!5.57e-14!43;CL:0000223!1.95e-11!59;CL:0002251!4.31e-09!21;CL:0002321!1.98e-08!248;CL:0000076!2.82e-08!62;CL:0000220!7.44e-08!246 | |||
|ontology_enrichment_celltype_v019=CL:0002327;7.60e-18;4!CL:0002159;5.07e-14;14!CL:0000240;2.69e-12;6!CL:0000311;2.69e-12;6!CL:0000079;2.69e-12;6!CL:0000237;2.69e-12;6!CL:0002166;8.31e-12;3!CL:0002231;3.41e-11;3!CL:0002621;3.41e-11;3!CL:0002336;5.09e-09;1!CL:0002261;5.09e-09;1!CL:0002170;5.09e-09;1!CL:0002379;5.09e-09;1!CL:0000362;2.31e-08;9!CL:0002076;1.98e-07;42!CL:0002077;2.60e-07;34!CL:0000312;3.20e-07;5!CL:0002537;4.69e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002327,4.95e-18,4;CL:0002159,7.06e-14,14;CL:0000240,3.81e-12,6;CL:0000311,3.81e-12,6;CL:0000079,3.81e-12,6;CL:0000237,3.81e-12,6;CL:0000036,3.81e-12,6;CL:0000357,3.81e-12,6;CL:0000114,3.81e-12,6;CL:0002166,7.91e-12,3;CL:0002621,2.64e-11,3;CL:0002231,6.01e-11,3;CL:0002379,5.31e-09,1;CL:0002336,5.75e-09,1;CL:0002261,5.75e-09,1;CL:0002170,5.75e-09,1;CL:0000362,3.21e-08,9;CL:0002076,3.78e-08,42;CL:0002077,8.69e-08,34;CL:0000066,1.60e-07,253;CL:0000312,4.04e-07,5;CL:0002537,5.31e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000357;2.69e-12;6!CL:0000114;2.69e-12;6!UBERON:0004874;5.09e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3620;5.09e-09;1!DOID:3565;5.09e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3620,5.31e-09,1;DOID:3565,5.31e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0000161!8.68e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0001911;7.60e-18;4!UBERON:0001949;3.41e-11;3!UBERON:0001708;4.53e-09;4!UBERON:0008895;4.53e-09;4!UBERON:0000989;5.09e-09;1!UBERON:0008811;5.09e-09;1!UBERON:0010371;2.70e-08;31!UBERON:0005631;1.89e-07;10!UBERON:0000158;1.89e-07;10!UBERON:0011159;2.04e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001911,4.95e-18,4;UBERON:0005333,4.95e-18,4;UBERON:0008425,4.95e-18,4;UBERON:0005311,4.95e-18,4;UBERON:0000076,1.05e-15,8;UBERON:0001949,2.64e-11,3;UBERON:0000989,3.58e-09,1;UBERON:0008811,3.58e-09,1;UBERON:0006258,3.58e-09,1;UBERON:0005876,3.58e-09,1;UBERON:0004874,3.58e-09,1;UBERON:0001708,4.37e-09,4;UBERON:0008895,4.37e-09,4;UBERON:0011159,1.98e-07,5;UBERON:0005153,5.65e-07,37 | |||
|phase1_expression=0,0,0,2.00146596706261,0,0,0,0,0,0,0,0.655324116390517,0.263766978228454,0,0.331397375727916,0,0,0,0.487932798790507,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0.6024118375565,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0.167186495390678,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0.14828656316206,0.267540828089713,0,0,0,0.34362744548263,0,0,0,0.950452044448374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0,0,0,0.370784442784429,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0.550236083880135,0.208994966536811,0.775250277507987,0.35576626268671,0.66944122552934,0,0.760272105718513,0.976248230192678,0.367663080345869,0,0.267899184852239,0.22452937262617,0.225222960966644,0,0.949265659568129,0.549605231791222,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0.122834317311768,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0.358779271377724,0,0,0.600182192168805,0.206105058476878,0.257640540045629,0.18611685633159,0.506328996723799,0.194874010322397,0,0,0,0,0.10075209822764,0,1.15956511897978,1.90922284413584,0.860413786167011,0.365921118388786,0.397589304964456,0,0,0.252320850875628,1.09493207722749,0,0,0,0,0,0,0,0,0.220587945464788,0,0.237270619111097,0.134831308160164,0.196221465125346,0.769494313892781,0,0,0,0,0,0,0,0,0,0.171567810298526,0.878002283269004,1.1240175325762,2.01057944823262,1.20364978706088,0,0,1.44331342025273,0,0,0,0,0.380508304469197,0,0,0,0,0.148631162288728,0,3.02367830757947,2.26840155587818,1.43293636324557,1.16253575405585,1.91691339582606,0,0,0,0,0,0,0.381988425558278,0,0,0,0,0,0,0,0,0,0,0,0.531876233169741,1.04007436911366,0,0,0,0,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0.178428988797162,0.157702415033935,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0.241718899183244,1.20303882181971,1.10497186723076,0.114814448164607,0,0,0,0.15403067420883,0,0,0.105551628892876,1.13733384070897,0.340187410553031,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0,0,0.206082023295445,0,0.082509499920588,1.14853107599234,0.650060246036521,0,0.096670718292122,0,0,0.137836572484531,0,0,0,0.0890320356467374,1.4875642382488,0.384380134730212,0.127612712494584,0.708104465988849,0,0,0,0,0.532306030317022,0,0,0,0.372158369359667,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0.384888450902048,0.670302275535787,0,0.0941438007767792,0.43050537267123,1.68471475667626,0,0.689170200620878,0,0.764637207142375,0.569647187174163,0,0,0,0,0,0.106824071127473,0,0.735120647943095,0,0.144269212976445,0,0.159426272728822,0,0.191505370132367,0.211673582723883,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,0,0,0.146508179271894,0,0,0,1.67121139316383,0,0.614321404198464,0,0,0,0.16480387422676,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0.568967241427498,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0.41827123283581,0,0.227884111694002,0,0.179515288819544,0.217294743844016,0.957003479195758,0.0915975934018623,1.5991043280559,0,0,0,0,0,0,0,0,0.210998064528027,0,0.141353071433941,0,0,0.265372693510018,0.611030144933625,0,0,0,0,0,0.468528891450678,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0.554698692052555,0,0.0979923974143777,0.0870592065804026,0.17472666824203,0,0.0967563312890851,0,0.0821154570532092,0,0,0,0,0.397429223405979,0,0,0,0,0.999048047910651,0.576361668616424,0,0,0.576219191952599,0.49701014226173,0.235694034616795,0,0,0.101998217636322,0,0,0,0,0,0,0.558564802544508,0,0,0,0,0.446342914883745,0.0671834724867263,0,0,0.0787831823072236,0.0824158583811665,0.13480708770837,0,0,0,0,0.482259445395058,0.412618309791701,0.415440338029185,0,0,0,0,0.394028536495991,0,0,0.179287339332845,0,0,0,0,0,0.864221491201268,0.653174720218818,0,0,0.170388021785422,0,0,0,0,0.26446520348538,0,0,0.106787412567695,0,0.414239055347196,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0.138348634936231,0.37494122388632,0,0.570930667089935,1.41159491818903,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.363697318405119,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0.358177682162975,0.308801447160972,0,0.353378291891762,0.192914038270915,0.675769762612291,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0.205116364240755,0,0,0,0,0.0981477185010256,0.235939446695481,0.917142992608395,0.462102664601353,0,0,0,0,0.20170506870352,0.781514011233092,0.261906694481422,0.655087670040387,0,0,0,0,0,0,0,1.48863353516788,0,0.511049710558381,0.535701835878287,0,0,0.227662191351298,0.354809480650555,0,0,0.0679697329768317,0,0.118193840883968,0.111231401892069,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0.62164849248911,0.512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| ||
|short_description=p@chr2:173352091..173352120,+ | |||
}} | }} |
Latest revision as of 02:29, 29 July 2015
Short description: | p@chr2:173352091..173352120, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:173352091..173352120, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mammary gland epithelial cell | 4.95e-18 | 4 |
general ecto-epithelial cell | 7.06e-14 | 14 |
stratified squamous epithelial cell | 3.81e-12 | 6 |
keratin accumulating cell | 3.81e-12 | 6 |
stratified epithelial cell | 3.81e-12 | 6 |
keratinizing barrier epithelial cell | 3.81e-12 | 6 |
epithelial fate stem cell | 3.81e-12 | 6 |
stratified epithelial stem cell | 3.81e-12 | 6 |
surface ectodermal cell | 3.81e-12 | 6 |
epithelial cell of Malassez | 7.91e-12 | 3 |
gingival epithelial cell | 2.64e-11 | 3 |
epithelial cell of prostate | 6.01e-11 | 3 |
meningothelial cell | 5.31e-09 | 1 |
buccal mucosa cell | 5.75e-09 | 1 |
endothelial cell of viscerocranial mucosa | 5.75e-09 | 1 |
keratinized cell of the oral mucosa | 5.75e-09 | 1 |
epidermal cell | 3.21e-08 | 9 |
endo-epithelial cell | 3.78e-08 | 42 |
ecto-epithelial cell | 8.69e-08 | 34 |
epithelial cell | 1.60e-07 | 253 |
keratinocyte | 4.04e-07 | 5 |
amnion mesenchymal stem cell | 5.31e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
mammary gland | 4.95e-18 | 4 |
mammary bud | 4.95e-18 | 4 |
mammary ridge | 4.95e-18 | 4 |
mammary placode | 4.95e-18 | 4 |
external ectoderm | 1.05e-15 | 8 |
gingival epithelium | 2.64e-11 | 3 |
penis | 3.58e-09 | 1 |
intromittent organ | 3.58e-09 | 1 |
lateral plate mesenchyme | 3.58e-09 | 1 |
undifferentiated genital tubercle | 3.58e-09 | 1 |
somatopleure | 3.58e-09 | 1 |
jaw skeleton | 4.37e-09 | 4 |
splanchnocranium | 4.37e-09 | 4 |
primary subdivision of cranial skeletal system | 1.98e-07 | 5 |
epithelial bud | 5.65e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
central nervous system cancer | 5.31e-09 | 1 |
meningioma | 5.31e-09 | 1 |