FFCP PHASE1:Hg19::chr22:30653761..30653772,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr22:30653761..30653772,-
|short_description=p@chr22:30653761..30653772,-
|description=CAGE_peak_at_chr22:30653761..30653772,-
|association_with_transcript=NA
...") |
No edit summary |
||
(12 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr22:30653761..30653772,- | |||
|coexpression_cluster_id=C1262 | |||
|description=CAGE_peak_at_chr22:30653761..30653772,- | |||
|id=chr22:30653761..30653772,- | |||
|ontology_enrichment_celltype=CL:0000066!6.81e-14!254;CL:1000497!7.77e-12!18;CL:0002518!7.77e-12!18;CL:1000507!2.26e-09!12;CL:1000494!2.26e-09!12;CL:1000449!1.57e-08!16 | |||
|ontology_enrichment_celltype_v019=CL:0000313;2.32e-13;1!CL:1000497;2.90e-11;17!CL:0002518;2.90e-11;17!CL:1000507;4.95e-11;10!CL:1000494;4.95e-11;10!CL:1000449;1.57e-07;15!CL:0000159;2.58e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000313,1.82e-13,1;CL:1000497,2.53e-11,17;CL:0002518,2.53e-11,17;CL:1000507,4.31e-11,10;CL:1000494,4.31e-11,10;CL:1000449,1.43e-07,15;CL:0000159,2.28e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!3.62e-25!143;DOID:305!5.68e-25!106;DOID:162!1.60e-17!235;DOID:14566!7.59e-17!239;DOID:299!1.82e-09!25 | |||
|ontology_enrichment_disease_v019=DOID:2152;2.32e-13;1!DOID:3347;6.05e-13;1!DOID:299;8.23e-08;25!DOID:4468;4.17e-07;2!DOID:4929;4.17e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,1.82e-13,1;DOID:3347,6.06e-13,1;DOID:299,7.66e-08,25;DOID:4468,3.28e-07,2;DOID:4929,4.69e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0002075!1.27e-13!18;UBERON:0003886!1.69e-13!63;UBERON:0002553!1.58e-11!70;UBERON:0002108!1.60e-11!14;UBERON:0001264!3.27e-11!10;UBERON:0003922!3.27e-11!10;UBERON:0003923!3.27e-11!10;UBERON:0003924!3.27e-11!10;UBERON:0003921!3.27e-11!10;UBERON:0002294!5.57e-11!7;UBERON:0001173!5.57e-11!7;UBERON:0004912!5.57e-11!7;UBERON:0002114!6.15e-11!12;UBERON:0005177!1.01e-10!107;UBERON:0000058!1.46e-10!26;UBERON:0000466!2.77e-10!126;UBERON:0002113!2.79e-10!27;UBERON:0003918!2.79e-10!27;UBERON:0005095!2.79e-10!27;UBERON:0007687!2.79e-10!27;UBERON:0000464!4.25e-10!104;UBERON:0001045!4.46e-10!11;UBERON:0000489!8.23e-10!32;UBERON:0009773!2.26e-09!12;UBERON:0001231!2.26e-09!12;UBERON:0004810!2.26e-09!12;UBERON:0006554!1.26e-08!44;UBERON:0004211!1.57e-08!16;UBERON:0001285!1.57e-08!16;UBERON:0007684!1.57e-08!16;UBERON:0003220!1.57e-08!16;UBERON:0004208!1.57e-08!16;UBERON:0001008!2.36e-08!45;UBERON:0006555!6.16e-08!17;UBERON:0005103!6.16e-08!17;UBERON:0000083!6.16e-08!17;UBERON:0009201!6.16e-08!17;UBERON:0004819!6.16e-08!17;UBERON:0006553!6.16e-08!17;UBERON:0003074!6.16e-08!17;UBERON:0003060!6.16e-08!17;UBERON:0002323!1.23e-07!46;UBERON:0000080!2.07e-07!18;UBERON:0002120!2.07e-07!18;UBERON:0004875!2.07e-07!18;UBERON:0005721!2.07e-07!18;UBERON:0005754!2.07e-07!18;UBERON:0007297!2.07e-07!18;UBERON:0003104!4.50e-07!238;UBERON:0009142!4.50e-07!238;UBERON:0000077!4.94e-07!130;UBERON:0002110!5.41e-07!3;UBERON:0006242!5.41e-07!3;UBERON:0005172!5.75e-07!55;UBERON:0005173!5.75e-07!55;UBERON:0004458!5.88e-07!49 | |||
|ontology_enrichment_uberon_v019=UBERON:0004911;2.32e-13;1!UBERON:0004913;6.05e-13;1!UBERON:0003703;6.05e-13;1!UBERON:0001174;6.05e-13;1!UBERON:0004914;6.05e-13;1!UBERON:0001264;3.75e-11;10!UBERON:0004211;4.95e-11;10!UBERON:0009773;4.95e-11;10!UBERON:0001231;4.95e-11;10!UBERON:0004810;4.95e-11;10!UBERON:0002113;4.86e-08;24!UBERON:0011143;4.86e-08;24!UBERON:0006555;1.57e-07;15!UBERON:0004819;1.57e-07;15!UBERON:0001285;1.57e-07;15!UBERON:0007684;1.57e-07;15!UBERON:0004909;2.58e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004911,1.82e-13,1;UBERON:0004913,7.68e-13,1;UBERON:0003703,7.68e-13,1;UBERON:0001174,7.68e-13,1;UBERON:0004914,7.68e-13,1;UBERON:0001264,3.50e-11,10;UBERON:0004810,4.31e-11,10;UBERON:0005177,2.54e-08,101;UBERON:0004211,1.43e-07,15;UBERON:0009773,1.43e-07,15;UBERON:0001231,1.43e-07,15;UBERON:0001285,1.43e-07,15;UBERON:0007684,1.43e-07,15;UBERON:0004208,1.43e-07,15;UBERON:0002113,1.80e-07,26;UBERON:0003918,1.80e-07,26;UBERON:0011143,1.80e-07,26;UBERON:0005095,1.80e-07,26;UBERON:0007687,1.80e-07,26;UBERON:0004909,2.28e-07,2;UBERON:0006555,3.97e-07,16;UBERON:0004819,3.97e-07,16 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0.236482229888585,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220587945464788,0.217879444092406,0.237270619111097,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0.985326475791887,0.176096868026452,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35359883872224,0.693138033939733,1.56869953835371,1.46139224653261,0.633309773357254,0,0,0.215915916102139,0,0,0,0.509752546090077,0.831076008928724,0,0,0,0,0.328014645699706,0,0,0.27470839445503,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.824019371133798,0,0,0,0,0,0,0,0.179736702294654,0.537063524026827,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89898258075224,0.979396848954886,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0.485560759068186,0,0,0,0,0,0,1.99396161812156,1.323967823502,0.941798755221676,2.38944859545918,0,0.970722711091971,0,0.0979923974143777,0.34823682632161,0,0,0,0,0,0,0,0,0.411125773940253,0,0,0.195551382734803,0.400794101257669,0.213452994739353,0.19980960958213,0,0,0,1.4405479798815,0,0.235694034616795,0.407712618220842,0.313808538937,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315132729228895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422401346077626,1.07572403599707,0,0,0,0.5085370753095,0,0,0,0,0,0.340776043570843,0,0,0,0,0,0.684347351537318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37494122388632,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,2.04993214870357,1.0362910251936,0.303859956177382,0,0,0,0,0,0,0.422624246717254,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0,0,0.115525666150338,0,1.3807198521202,0,0,0.20170506870352,0,0,0,1.33070477595341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354581522651905,0.444925607568277,0,0,0,0,2.80705868584208,0.9555033757741,0,0,0.23248285073625,0,0,0,0,0,0,0,0,0,5.9567785821453,0.62041277132864,0,2.9082412267426,0.785201868921944,0.243835849964539,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,2.16651690060754,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0.89543595472072,0.426909383510862,0,0.628776414746108,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0.236482229888585,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220587945464788,0.217879444092406,0.237270619111097,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0.985326475791887,0.176096868026452,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35359883872224,0.693138033939733,1.56869953835371,1.46139224653261,0.633309773357254,0,0,0.215915916102139,0,0,0,0.509752546090077,0.831076008928724,0,0,0,0,0.328014645699706,0,0,0.27470839445503,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.824019371133798,0,0,0,0,0,0,0,0.179736702294654,0.537063524026827,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89898258075224,0.979396848954886,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0.485560759068186,0,0,0,0,0,0,1.99396161812156,1.323967823502,0.941798755221676,2.38944859545918,0,0.970722711091971,0,0.0979923974143777,0.34823682632161,0,0,0,0,0,0,0,0,0.411125773940253,0,0,0.195551382734803,0.400794101257669,0.213452994739353,0.19980960958213,0,0,0,1.4405479798815,0,0.235694034616795,0.407712618220842,0.313808538937,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315132729228895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422401346077626,1.07572403599707,0,0,0,0.5085370753095,0,0,0,0,0,0.340776043570843,0,0,0,0,0,0.684347351537318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37494122388632,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,2.04993214870357,1.0362910251936,0.303859956177382,0,0,0,0,0,0,0.422624246717254,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0,0,0.115525666150338,0,1.3807198521202,0,0,0.20170506870352,0,0,0,1.33070477595341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354581522651905,0.444925607568277,0,0,0,0,2.80705868584208,0.9555033757741,0,0,0.23248285073625,0,0,0,0,0,0,0,0,0,5.9567785821453,0.62041277132864,0,2.9082412267426,0.785201868921944,0.243835849964539,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,2.16651690060754,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0.89543595472072,0.426909383510862,0,0.628776414746108,0,0.122241444182866,0,0,0,0 | ||
|short_description=p@chr22:30653761..30653772,- | |||
}} | }} |
Latest revision as of 20:05, 28 July 2015
Short description: | p@chr22:30653761..30653772, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr22:30653761..30653772, - |
Coexpression cluster: | C1262_renal_clear_Renal_papillotubular_embryonic_mucinous_serous |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
serous secreting cell | 1.82e-13 | 1 |
kidney cell | 2.53e-11 | 17 |
kidney epithelial cell | 2.53e-11 | 17 |
kidney tubule cell | 4.31e-11 | 10 |
nephron tubule epithelial cell | 4.31e-11 | 10 |
epithelial cell of nephron | 1.43e-07 | 15 |
seromucus secreting cell | 2.28e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
epithelium of female gonad | 1.82e-13 | 1 |
hepatopancreatic ampulla | 7.68e-13 | 1 |
extrahepatic bile duct | 7.68e-13 | 1 |
common bile duct | 7.68e-13 | 1 |
duodenal papilla | 7.68e-13 | 1 |
pancreas | 3.50e-11 | 10 |
nephron tubule epithelium | 4.31e-11 | 10 |
trunk region element | 2.54e-08 | 101 |
nephron epithelium | 1.43e-07 | 15 |
renal tubule | 1.43e-07 | 15 |
nephron tubule | 1.43e-07 | 15 |
nephron | 1.43e-07 | 15 |
uriniferous tubule | 1.43e-07 | 15 |
nephrogenic mesenchyme | 1.43e-07 | 15 |
kidney | 1.80e-07 | 26 |
kidney mesenchyme | 1.80e-07 | 26 |
upper urinary tract | 1.80e-07 | 26 |
kidney rudiment | 1.80e-07 | 26 |
kidney field | 1.80e-07 | 26 |
epithelium of gonad | 2.28e-07 | 2 |
excretory tube | 3.97e-07 | 16 |
kidney epithelium | 3.97e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 1.82e-13 | 1 |
osteosarcoma | 6.06e-13 | 1 |
adenocarcinoma | 7.66e-08 | 25 |
clear cell adenocarcinoma | 3.28e-07 | 2 |
tubular adenocarcinoma | 4.69e-07 | 2 |