FFCP PHASE1:Hg19::chr20:62167895..62167907,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:62167895..62167907,- | |||
|description=CAGE_peak_at_chr20:62167895..62167907,- | |description=CAGE_peak_at_chr20:62167895..62167907,- | ||
|id=chr20:62167895..62167907,- | |id=chr20:62167895..62167907,- | ||
|ontology_enrichment_celltype=CL:0000066!2.18e-27!254;CL:0002368!1.65e-21!13;CL:0002076!4.65e-20!43;CL:0000223!3.47e-16!59;CL:0002202!3.11e-13!9;CL:0002632!3.11e-13!9;CL:0002159!2.95e-11!13;CL:0002150!6.72e-09!3;CL:0000861!6.72e-09!3;CL:0002328!1.80e-08!3;CL:0000068!2.26e-08!3;CL:0000069!2.26e-08!3;CL:0000307!2.26e-08!3;CL:0000377!2.26e-08!3;CL:0002621!3.87e-08!3;CL:0002251!6.12e-08!21;CL:0000362!7.75e-08!8 | |ontology_enrichment_celltype=CL:0000066!2.18e-27!254;CL:0002368!1.65e-21!13;CL:0002076!4.65e-20!43;CL:0000223!3.47e-16!59;CL:0002202!3.11e-13!9;CL:0002632!3.11e-13!9;CL:0002159!2.95e-11!13;CL:0002150!6.72e-09!3;CL:0000861!6.72e-09!3;CL:0002328!1.80e-08!3;CL:0000068!2.26e-08!3;CL:0000069!2.26e-08!3;CL:0000307!2.26e-08!3;CL:0000377!2.26e-08!3;CL:0002621!3.87e-08!3;CL:0002251!6.12e-08!21;CL:0000362!7.75e-08!8 | ||
|ontology_enrichment_celltype_v019=CL:0000307;4.54e-13;3!CL:0002368;2.15e-11;13!CL:0002202;1.19e-09;9!CL:0002632;1.19e-09;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,6.56e-13,3;CL:0000069,6.56e-13,3;CL:0000307,6.56e-13,3;CL:0000377,6.56e-13,3;CL:0002368,2.99e-11,13;CL:0000066,5.61e-10,253;CL:0002202,1.63e-09,9;CL:0002632,1.63e-09,9;CL:0002076,2.37e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0008814;4.11e-19;2!UBERON:0010056;4.11e-19;2!CL:0000377;4.54e-13;3!UBERON:0009143;7.38e-11;1 | |||
|ontology_enrichment_disease=DOID:305!3.96e-21!106;DOID:0050687!4.22e-13!143 | |||
|ontology_enrichment_disease_v019=DOID:3111;1.98e-10;1!DOID:3603;1.98e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,4.75e-10,1;DOID:3603,4.75e-10,1;DOID:305,4.38e-07,106 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001723;4.54e-13;3!UBERON:0001033;4.54e-13;3!UBERON:0002372;1.98e-10;1!UBERON:0001961;1.98e-10;1!UBERON:0001744;1.98e-10;1!UBERON:0001042;1.98e-10;1!UBERON:0001735;1.98e-10;1!UBERON:0003343;4.97e-10;4!UBERON:0004785;4.97e-10;4!UBERON:0000065;3.35e-08;44!UBERON:0000072;7.34e-08;37!UBERON:0000344;1.84e-07;20!UBERON:0000974;5.74e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000065,2.81e-15,54;UBERON:0000072,2.22e-14,47;UBERON:0001004,4.06e-13,74;UBERON:0001723,4.29e-13,3;UBERON:0001033,4.29e-13,3;UBERON:0010056,4.29e-13,3;UBERON:0001557,6.86e-12,19;UBERON:0002372,2.08e-10,1;UBERON:0001961,2.08e-10,1;UBERON:0001744,2.08e-10,1;UBERON:0001735,2.08e-10,1;UBERON:0003343,2.51e-10,4;UBERON:0004785,2.51e-10,4;UBERON:0001041,5.76e-09,87;UBERON:0004119,9.45e-09,160;UBERON:0000925,9.45e-09,160;UBERON:0006595,9.45e-09,160;UBERON:0001042,9.71e-09,10;UBERON:0009145,9.71e-09,10;UBERON:0008947,3.47e-08,38;UBERON:0003258,3.47e-08,38;UBERON:0006562,5.47e-08,11;UBERON:0000344,1.69e-07,20;UBERON:0001007,4.94e-07,145;UBERON:0001555,4.94e-07,145;UBERON:0007026,4.94e-07,145;UBERON:0000166,7.67e-07,22 | |||
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| ||
|short_description=p@chr20:62167895..62167907,- | |short_description=p@chr20:62167895..62167907,- | ||
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Latest revision as of 16:21, 28 July 2015
Short description: | p@chr20:62167895..62167907, - |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:62167895..62167907, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 6.56e-13 | 3 |
branched duct epithelial cell | 6.56e-13 | 3 |
tracheal epithelial cell | 6.56e-13 | 3 |
tracheoblast | 6.56e-13 | 3 |
respiratory epithelial cell | 2.99e-11 | 13 |
epithelial cell | 5.61e-10 | 253 |
epithelial cell of tracheobronchial tree | 1.63e-09 | 9 |
epithelial cell of lower respiratory tract | 1.63e-09 | 9 |
endo-epithelial cell | 2.37e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
respiratory tract | 2.81e-15 | 54 |
segment of respiratory tract | 2.22e-14 | 47 |
respiratory system | 4.06e-13 | 74 |
tongue | 4.29e-13 | 3 |
gustatory system | 4.29e-13 | 3 |
future tongue | 4.29e-13 | 3 |
upper respiratory tract | 6.86e-12 | 19 |
tonsil | 2.08e-10 | 1 |
mucosa-associated lymphoid tissue | 2.08e-10 | 1 |
lymphoid tissue | 2.08e-10 | 1 |
tonsillar ring | 2.08e-10 | 1 |
mucosa of oral region | 2.51e-10 | 4 |
respiratory system mucosa | 2.51e-10 | 4 |
foregut | 5.76e-09 | 87 |
endoderm-derived structure | 9.45e-09 | 160 |
endoderm | 9.45e-09 | 160 |
presumptive endoderm | 9.45e-09 | 160 |
chordate pharynx | 9.71e-09 | 10 |
pharyngeal region of foregut | 9.71e-09 | 10 |
respiratory primordium | 3.47e-08 | 38 |
endoderm of foregut | 3.47e-08 | 38 |
pharynx | 5.47e-08 | 11 |
mucosa | 1.69e-07 | 20 |
digestive system | 4.94e-07 | 145 |
digestive tract | 4.94e-07 | 145 |
primitive gut | 4.94e-07 | 145 |
oral opening | 7.67e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 4.75e-10 | 1 |
mucinous cystadenocarcinoma | 4.75e-10 | 1 |
carcinoma | 4.38e-07 | 106 |