FFCP PHASE1:Hg19::chr20:61200367..61200387,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:61200367..61200387,- | |||
|description=CAGE_peak_at_chr20:61200367..61200387,- | |description=CAGE_peak_at_chr20:61200367..61200387,- | ||
|id=chr20:61200367..61200387,- | |id=chr20:61200367..61200387,- | ||
|ontology_enrichment_celltype=CL:0000860!5.84e-23!45;CL:0002057!1.21e-19!42;CL:0002009!1.07e-16!65;CL:0002194!1.86e-16!63;CL:0000576!1.86e-16!63;CL:0000040!1.86e-16!63;CL:0000559!1.86e-16!63;CL:0000557!2.34e-16!71;CL:0000839!1.03e-15!70;CL:0000766!1.32e-14!76;CL:0000763!8.66e-12!112;CL:0000049!8.66e-12!112 | |ontology_enrichment_celltype=CL:0000860!5.84e-23!45;CL:0002057!1.21e-19!42;CL:0002009!1.07e-16!65;CL:0002194!1.86e-16!63;CL:0000576!1.86e-16!63;CL:0000040!1.86e-16!63;CL:0000559!1.86e-16!63;CL:0000557!2.34e-16!71;CL:0000839!1.03e-15!70;CL:0000766!1.32e-14!76;CL:0000763!8.66e-12!112;CL:0000049!8.66e-12!112 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.98e-13;33!CL:0002057;4.98e-13;33!CL:0000473;1.70e-10;39!CL:0000234;1.70e-10;39!CL:0000576;1.45e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.27e-11,42;CL:0002057,6.27e-11,42;CL:0000473,2.41e-09,48;CL:0000234,2.41e-09,48;CL:0002194,9.56e-09,59;CL:0000576,9.56e-09,59;CL:0000040,9.56e-09,59;CL:0000559,9.56e-09,59;CL:0002009,2.12e-08,61;CL:0000839,1.26e-07,66;CL:0000557,1.75e-07,67;CL:0000766,7.75e-07,72 | |||
|ontology_enrichment_development_v019=CL:0002057;2.86e-08;42 | |||
|ontology_enrichment_disease=DOID:0050687!1.95e-17!143;DOID:305!1.15e-16!106;DOID:14566!1.24e-13!239;DOID:162!2.55e-13!235 | |ontology_enrichment_disease=DOID:0050687!1.95e-17!143;DOID:305!1.15e-16!106;DOID:14566!1.24e-13!239;DOID:162!2.55e-13!235 | ||
|ontology_enrichment_disease_v019=DOID:3347;4.42e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.99e-14,106;DOID:0050687,2.72e-12,143;DOID:162,2.99e-10,235;DOID:14566,6.34e-10,239;DOID:3347,4.69e-07,1;DOID:0060085,5.26e-07,1;DOID:3165,5.26e-07,1;DOID:0060121,5.26e-07,1;DOID:2438,5.26e-07,1;DOID:4418,5.26e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!4.01e-15!80;UBERON:0001474!2.39e-14!86;UBERON:0001737!2.35e-12!9;UBERON:0002405!1.35e-11!115;UBERON:0002390!1.05e-10!102;UBERON:0003061!1.05e-10!102;UBERON:0004765!1.70e-10!101;UBERON:0001434!1.70e-10!101;UBERON:0002193!5.61e-10!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;9.87e-10;9!UBERON:0001557;9.87e-10;9!UBERON:0002294;1.22e-07;7!UBERON:0001173;1.22e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.50e-09,9;UBERON:0001474,5.21e-07,82;UBERON:0001282,7.82e-07,1;UBERON:0009842,7.82e-07,1;UBERON:0003704,7.82e-07,1;UBERON:0001171,7.82e-07,1;UBERON:0001172,7.82e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464448369948228,0,0,0,0,0,0,0,0.601633342410425,0.434021741431704,0,0,0,0.145398238779565,0.755751887377619,1.94067248950253,0.929716147622738,1.6446715520873,0.929119112685311,0.863077176966451,0.768482119587302,0.945928919554341,1.03423704220986,1.29096936716765,0,0.564727018627814,1.36453075028923,0,0.918251677112708,0,0.639337125799041,0.659702600373432,0.598390972864896,0.426224750532694,1.45104619314292,1.70215567407342,1.24564449799115,1.00499466102697,1.0429658368404,0.65156653411535,0.605399502633369,0,0.949387162322653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0.973269740605272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828147600278907,1.18009283054671,0.964044119533928,1.10293972732394,0.435758888184812,1.18635309555548,0.808987848960987,0.588664395376038,1.15424147083917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0.492434012174795,0,0.148631162288728,0,0,0,0.806026704325635,0,0,0,0,0.414656231081544,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276242966807689,0,0,0,0,0.15403067420883,0,1.46139224653261,0.422206515571503,0,0,0.215915916102139,0,0,0,0.509752546090077,0,0.223874754722178,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0.10115778085555,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0.281695602532241,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05836791361941,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0.99921590399346,0,0.37428108081644,0,0,0,0,0,0,0,0,0,0,2.96646973608167,0,0,0,0,0,0,0,0.179736702294654,1.07412704805365,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0.699679999969566,0,0.1137934482855,0,0.472775363535873,4.13692047889758,0,0,0,0,0,0,0,0.219385397153973,3.37709236908869,0,0,1.59518878185802,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0.0979923974143777,0,0,0,1.16107597546902,2.33885814675794,0.739039113478883,0.0969890164884194,0,0,0.685209623233754,1.9871461170299,0,0,3.12619398980981,0,0.999048047910651,0,0,0,2.0167671718341,1.61528296235062,1.17847017308398,0.407712618220842,0.732219924186332,0.203996435272644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295282444544246,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0.0524545881349981,0.211200673038813,0,0.191915197319445,0,0,0,0,0,0,0,0.328370082997356,0.170388021785422,0.453248366080503,0.146552233678082,0,0,0,0,0.704815022316672,0.213574825135389,0,0,0,0,0,1.91502377331055,0,0,0,0,0,0,0.122026264901963,0,0,0,0.18628920882415,0,0.249960815924213,0,0.285465333544967,0.705797459094515,2.34167452903441,0,0,0,0,0.378806010550178,0.251567901752575,0,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530067437837643,0,0,0,0,0,0,0,0,0,1.31043939538565,0.245772908753719,0.633936370075881,0,0.106691729694141,0,0,0.736423801007363,0.279759015438889,0,0,0.107824811396682,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,2.0710797781803,0,0.0752103283492573,0.20170506870352,0,0,0,0.147856086217045,0,0,0,0,0,0.548257766857182,0.496211178389294,0,0,0.535701835878287,0.672567444437648,0,0,0.0887023701626388,0,0.514464028312255,0,0,0,1.4460082245969,0,0,0,0,1.72742072974897,0.47775168788705,0.214429632529969,0,0,0,0,0.414432328326074,0,0,0,0.118332000730565,0.0852134047591577,0.423387050190929,0,6.82454048461504,3.82215575590973,0,0.294450700845729,0.121917924982269,0,0.102662806856247,0,0.485710993059139,0,0.596852325484105,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,1.05868461514708,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0.244209805832924,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464448369948228,0,0,0,0,0,0,0,0.601633342410425,0.434021741431704,0,0,0,0.145398238779565,0.755751887377619,1.94067248950253,0.929716147622738,1.6446715520873,0.929119112685311,0.863077176966451,0.768482119587302,0.945928919554341,1.03423704220986,1.29096936716765,0,0.564727018627814,1.36453075028923,0,0.918251677112708,0,0.639337125799041,0.659702600373432,0.598390972864896,0.426224750532694,1.45104619314292,1.70215567407342,1.24564449799115,1.00499466102697,1.0429658368404,0.65156653411535,0.605399502633369,0,0.949387162322653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0.973269740605272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828147600278907,1.18009283054671,0.964044119533928,1.10293972732394,0.435758888184812,1.18635309555548,0.808987848960987,0.588664395376038,1.15424147083917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0.492434012174795,0,0.148631162288728,0,0,0,0.806026704325635,0,0,0,0,0.414656231081544,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276242966807689,0,0,0,0,0.15403067420883,0,1.46139224653261,0.422206515571503,0,0,0.215915916102139,0,0,0,0.509752546090077,0,0.223874754722178,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0.10115778085555,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0.281695602532241,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05836791361941,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0.99921590399346,0,0.37428108081644,0,0,0,0,0,0,0,0,0,0,2.96646973608167,0,0,0,0,0,0,0,0.179736702294654,1.07412704805365,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0.699679999969566,0,0.1137934482855,0,0.472775363535873,4.13692047889758,0,0,0,0,0,0,0,0.219385397153973,3.37709236908869,0,0,1.59518878185802,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0.0979923974143777,0,0,0,1.16107597546902,2.33885814675794,0.739039113478883,0.0969890164884194,0,0,0.685209623233754,1.9871461170299,0,0,3.12619398980981,0,0.999048047910651,0,0,0,2.0167671718341,1.61528296235062,1.17847017308398,0.407712618220842,0.732219924186332,0.203996435272644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295282444544246,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0.0524545881349981,0.211200673038813,0,0.191915197319445,0,0,0,0,0,0,0,0.328370082997356,0.170388021785422,0.453248366080503,0.146552233678082,0,0,0,0,0.704815022316672,0.213574825135389,0,0,0,0,0,1.91502377331055,0,0,0,0,0,0,0.122026264901963,0,0,0,0.18628920882415,0,0.249960815924213,0,0.285465333544967,0.705797459094515,2.34167452903441,0,0,0,0,0.378806010550178,0.251567901752575,0,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530067437837643,0,0,0,0,0,0,0,0,0,1.31043939538565,0.245772908753719,0.633936370075881,0,0.106691729694141,0,0,0.736423801007363,0.279759015438889,0,0,0.107824811396682,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,2.0710797781803,0,0.0752103283492573,0.20170506870352,0,0,0,0.147856086217045,0,0,0,0,0,0.548257766857182,0.496211178389294,0,0,0.535701835878287,0.672567444437648,0,0,0.0887023701626388,0,0.514464028312255,0,0,0,1.4460082245969,0,0,0,0,1.72742072974897,0.47775168788705,0.214429632529969,0,0,0,0,0.414432328326074,0,0,0,0.118332000730565,0.0852134047591577,0.423387050190929,0,6.82454048461504,3.82215575590973,0,0.294450700845729,0.121917924982269,0,0.102662806856247,0,0.485710993059139,0,0.596852325484105,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,1.05868461514708,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0.244209805832924,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr20:61200367..61200387,- | |short_description=p@chr20:61200367..61200387,- | ||
}} | }} |
Latest revision as of 16:11, 28 July 2015
Short description: | p@chr20:61200367..61200387, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:61200367..61200387, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.27e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.27e-11 | 42 |
defensive cell | 2.41e-09 | 48 |
phagocyte | 2.41e-09 | 48 |
monopoietic cell | 9.56e-09 | 59 |
monocyte | 9.56e-09 | 59 |
monoblast | 9.56e-09 | 59 |
promonocyte | 9.56e-09 | 59 |
macrophage dendritic cell progenitor | 2.12e-08 | 61 |
myeloid lineage restricted progenitor cell | 1.26e-07 | 66 |
granulocyte monocyte progenitor cell | 1.75e-07 | 67 |
myeloid leukocyte | 7.75e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.50e-09 | 9 |
bone element | 5.21e-07 | 82 |
intralobular bile duct | 7.82e-07 | 1 |
acinus | 7.82e-07 | 1 |
intrahepatic bile duct | 7.82e-07 | 1 |
portal lobule | 7.82e-07 | 1 |
hepatic acinus | 7.82e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.99e-14 | 106 |
cell type cancer | 2.72e-12 | 143 |
cancer | 2.99e-10 | 235 |
disease of cellular proliferation | 6.34e-10 | 239 |
osteosarcoma | 4.69e-07 | 1 |
organ system benign neoplasm | 5.26e-07 | 1 |
skin benign neoplasm | 5.26e-07 | 1 |
integumentary system benign neoplasm | 5.26e-07 | 1 |
dermis tumor | 5.26e-07 | 1 |
cutaneous fibrous histiocytoma | 5.26e-07 | 1 |