FFCP PHASE1:Hg19::chr20:52748891..52748895,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:52748891..52748895,- | |||
|description=CAGE_peak_at_chr20:52748891..52748895,- | |description=CAGE_peak_at_chr20:52748891..52748895,- | ||
|id=chr20:52748891..52748895,- | |id=chr20:52748891..52748895,- | ||
|ontology_enrichment_celltype=CL:0000066!7.21e-13!254;CL:0000188!9.90e-07!9 | |ontology_enrichment_celltype=CL:0000066!7.21e-13!254;CL:0000188!9.90e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000322;2.39e-08;3!CL:0000319;4.09e-07;1!CL:1001319;5.42e-07;1!CL:1000600;5.42e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.11e-11,253;CL:0000322,2.39e-08,3;CL:0000319,4.09e-07,1;CL:1001319,5.43e-07,1;CL:1000600,5.43e-07,1;CL:0000076,8.74e-07,63 | |||
|ontology_enrichment_development_v019=UBERON:0009847;4.63e-08;3!UBERON:0003353;4.63e-08;3 | |||
|ontology_enrichment_disease=DOID:305!2.70e-29!106;DOID:0050687!2.99e-28!143;DOID:162!2.28e-22!235;DOID:14566!2.38e-21!239;DOID:1749!1.95e-16!14;DOID:7!1.78e-14!39;DOID:299!4.25e-14!25;DOID:0050615!8.50e-07!16 | |ontology_enrichment_disease=DOID:305!2.70e-29!106;DOID:0050687!2.99e-28!143;DOID:162!2.28e-22!235;DOID:14566!2.38e-21!239;DOID:1749!1.95e-16!14;DOID:7!1.78e-14!39;DOID:299!4.25e-14!25;DOID:0050615!8.50e-07!16 | ||
|ontology_enrichment_disease_v019=DOID:1749;4.02e-30;14!DOID:3910;4.18e-12;2!DOID:3908;1.49e-10;5!DOID:0050687;6.89e-08;143!DOID:299;3.51e-07;25!DOID:3030;4.09e-07;1!DOID:7;6.74e-07;39!DOID:3112;7.38e-07;1!DOID:305;8.14e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.13e-30,14;DOID:0050687,1.16e-29,143;DOID:305,1.12e-28,106;DOID:162,3.61e-18,235;DOID:14566,1.18e-17,239;DOID:3910,4.19e-12,2;DOID:3908,1.62e-10,5;DOID:7,1.54e-07,39;DOID:299,3.32e-07,25;DOID:3030,4.09e-07,1;DOID:3112,7.60e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005911!8.26e-07!82 | |ontology_enrichment_uberon=UBERON:0005911!8.26e-07!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0003343;8.42e-13;4!UBERON:0004785;8.42e-13;4!UBERON:0004903;4.18e-12;2!UBERON:0002173;4.18e-12;2!UBERON:0002186;4.18e-12;2!UBERON:0000058;7.05e-09;10!UBERON:0000974;1.09e-08;6!UBERON:0004821;2.39e-08;3!UBERON:0007499;2.39e-08;3!UBERON:0003215;2.39e-08;3!UBERON:0010368;2.39e-08;3!UBERON:0009911;2.39e-08;3!UBERON:0002299;2.39e-08;3!UBERON:0006524;2.39e-08;3!UBERON:0008874;2.39e-08;3!UBERON:0002169;2.39e-08;3!UBERON:0004894;2.39e-08;3!UBERON:0004645;5.42e-07;1!UBERON:0001256;5.42e-07;1!UBERON:0001259;5.42e-07;1!UBERON:0004913;7.38e-07;1!UBERON:0003703;7.38e-07;1!UBERON:0001174;7.38e-07;1!UBERON:0004914;7.38e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,7.79e-13,4;UBERON:0004785,7.79e-13,4;UBERON:0004903,4.19e-12,2;UBERON:0002173,4.19e-12,2;UBERON:0002186,4.19e-12,2;UBERON:0004821,2.39e-08,3;UBERON:0003215,2.39e-08,3;UBERON:0010368,2.39e-08,3;UBERON:0009911,2.39e-08,3;UBERON:0002299,2.39e-08,3;UBERON:0006524,2.39e-08,3;UBERON:0008874,2.39e-08,3;UBERON:0002169,2.39e-08,3;UBERON:0004894,2.39e-08,3;UBERON:0004645,5.43e-07,1;UBERON:0001256,5.43e-07,1;UBERON:0001259,5.43e-07,1;UBERON:0004913,6.80e-07,1;UBERON:0003703,6.80e-07,1;UBERON:0001174,6.80e-07,1;UBERON:0004914,6.80e-07,1 | |||
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| ||
|short_description=p@chr20:52748891..52748895,- | |short_description=p@chr20:52748891..52748895,- | ||
}} | }} |
Latest revision as of 15:34, 28 July 2015
Short description: | p@chr20:52748891..52748895, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:52748891..52748895, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.11e-11 | 253 |
pneumocyte | 2.39e-08 | 3 |
mucus secreting cell | 4.09e-07 | 1 |
bladder cell | 5.43e-07 | 1 |
lower urinary tract cell | 5.43e-07 | 1 |
squamous epithelial cell | 8.74e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 7.79e-13 | 4 |
respiratory system mucosa | 7.79e-13 | 4 |
bronchoalveolar duct junction | 4.19e-12 | 2 |
alveolar duct | 4.19e-12 | 2 |
bronchiole | 4.19e-12 | 2 |
pulmonary alveolus epithelium | 2.39e-08 | 3 |
alveolus | 2.39e-08 | 3 |
pulmonary lobule | 2.39e-08 | 3 |
lobule | 2.39e-08 | 3 |
alveolus of lung | 2.39e-08 | 3 |
alveolar system | 2.39e-08 | 3 |
pulmonary acinus | 2.39e-08 | 3 |
alveolar sac | 2.39e-08 | 3 |
alveolar wall | 2.39e-08 | 3 |
urinary bladder urothelium | 5.43e-07 | 1 |
wall of urinary bladder | 5.43e-07 | 1 |
mucosa of urinary bladder | 5.43e-07 | 1 |
hepatopancreatic ampulla | 6.80e-07 | 1 |
extrahepatic bile duct | 6.80e-07 | 1 |
common bile duct | 6.80e-07 | 1 |
duodenal papilla | 6.80e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.13e-30 | 14 |
cell type cancer | 1.16e-29 | 143 |
carcinoma | 1.12e-28 | 106 |
cancer | 3.61e-18 | 235 |
disease of cellular proliferation | 1.18e-17 | 239 |
lung adenocarcinoma | 4.19e-12 | 2 |
non-small cell lung carcinoma | 1.62e-10 | 5 |
disease of anatomical entity | 1.54e-07 | 39 |
adenocarcinoma | 3.32e-07 | 25 |
mucinous adenocarcinoma | 4.09e-07 | 1 |
papillary adenocarcinoma | 7.60e-07 | 1 |