FFCP PHASE1:Hg19::chr20:52369856..52369863,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:52369856..52369863,- | |||
|description=CAGE_peak_at_chr20:52369856..52369863,- | |description=CAGE_peak_at_chr20:52369856..52369863,- | ||
|id=chr20:52369856..52369863,- | |id=chr20:52369856..52369863,- | ||
|ontology_enrichment_celltype=CL:0000066!4.04e-30!254;CL:0002076!6.77e-20!43;CL:0000223!2.01e-18!59;CL:0002321!3.14e-11!248;CL:0000220!3.23e-11!246;CL:0002368!7.04e-09!13;CL:0002202!5.09e-08!9;CL:0002632!5.09e-08!9;CL:0002251!1.54e-07!21;CL:0000548!2.49e-07!679;CL:0000004!2.49e-07!679;CL:0000255!2.49e-07!679;CL:0000012!5.36e-07!682 | |ontology_enrichment_celltype=CL:0000066!4.04e-30!254;CL:0002076!6.77e-20!43;CL:0000223!2.01e-18!59;CL:0002321!3.14e-11!248;CL:0000220!3.23e-11!246;CL:0002368!7.04e-09!13;CL:0002202!5.09e-08!9;CL:0002632!5.09e-08!9;CL:0002251!1.54e-07!21;CL:0000548!2.49e-07!679;CL:0000004!2.49e-07!679;CL:0000255!2.49e-07!679;CL:0000012!5.36e-07!682 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.61e-24;42!CL:0002368;3.24e-14;13!CL:0002251;2.68e-12;20!CL:0002202;8.00e-12;9!CL:0002632;8.00e-12;9!CL:0002159;1.92e-07;14!CL:0002149;2.39e-07;6!CL:0002255;2.39e-07;6!CL:0000244;4.02e-07;4!CL:0000731;4.02e-07;4!CL:0000083;7.31e-07;4 | |ontology_enrichment_celltype_v019=CL:0002076;1.61e-24;42!CL:0002368;3.24e-14;13!CL:0002251;2.68e-12;20!CL:0002202;8.00e-12;9!CL:0002632;8.00e-12;9!CL:0002159;1.92e-07;14!CL:0002149;2.39e-07;6!CL:0002255;2.39e-07;6!CL:0000244;4.02e-07;4!CL:0000731;4.02e-07;4!CL:0000083;7.31e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.76e-33,42;CL:0000223,1.01e-31,58;CL:0000066,2.08e-31,253;CL:0002321,2.40e-14,250;CL:0002368,3.08e-14,13;CL:0002251,2.20e-12,20;CL:0002202,7.73e-12,9;CL:0002632,7.73e-12,9;CL:0000076,1.07e-09,63;CL:0002159,1.26e-07,14;CL:0002149,2.53e-07,6;CL:0002255,2.53e-07,6;CL:0000221,3.72e-07,72;CL:0000244,4.82e-07,4;CL:0000731,4.82e-07,4;CL:0000083,6.03e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000223;2.03e-16;58 | |ontology_enrichment_development_v019=CL:0000223;2.03e-16;58 | ||
|ontology_enrichment_disease=DOID:162!7.87e-34!235;DOID:14566!1.01e-32!239;DOID:0050687!4.31e-27!143;DOID:305!1.06e-26!106;DOID:0050686!3.09e-12!137;DOID:299!2.99e-10!25;DOID:1749!2.68e-08!14;DOID:120!2.69e-07!27;DOID:193!6.00e-07!29 | |ontology_enrichment_disease=DOID:162!7.87e-34!235;DOID:14566!1.01e-32!239;DOID:0050687!4.31e-27!143;DOID:305!1.06e-26!106;DOID:0050686!3.09e-12!137;DOID:299!2.99e-10!25;DOID:1749!2.68e-08!14;DOID:120!2.69e-07!27;DOID:193!6.00e-07!29 | ||
|ontology_enrichment_disease_v019=DOID:299;2.15e-13;25!DOID:1749;2.58e-13;14!DOID:120;1.85e-07;27!DOID:3001;2.39e-07;6!DOID:1793;7.31e-07;4 | |ontology_enrichment_disease_v019=DOID:299;2.15e-13;25!DOID:1749;2.58e-13;14!DOID:120;1.85e-07;27!DOID:3001;2.39e-07;6!DOID:1793;7.31e-07;4 | ||
|ontology_enrichment_disease_v019_2=DOID:305,4.64e-22,106;DOID:0050687,3.91e-20,143;DOID:162,1.16e-19,235;DOID:14566,8.20e-19,239;DOID:299,1.65e-13,25;DOID:1749,2.16e-13,14;DOID:0050686,4.98e-08,137;DOID:120,1.70e-07,27;DOID:3001,2.53e-07,6;DOID:1793,6.03e-07,4;DOID:193,9.26e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.35e-10!169;UBERON:0000925!7.35e-10!169;UBERON:0006595!7.35e-10!169;UBERON:0001007!1.69e-07!155;UBERON:0001555!1.69e-07!155;UBERON:0007026!1.69e-07!155;UBERON:0008947!3.11e-07!38;UBERON:0003258!3.11e-07!38;UBERON:0001004!5.52e-07!72;UBERON:0003100!7.84e-07!41;UBERON:0000065!7.87e-07!53;UBERON:0005911!7.90e-07!82;UBERON:0000072!8.06e-07!46 | |ontology_enrichment_uberon=UBERON:0004119!7.35e-10!169;UBERON:0000925!7.35e-10!169;UBERON:0006595!7.35e-10!169;UBERON:0001007!1.69e-07!155;UBERON:0001555!1.69e-07!155;UBERON:0007026!1.69e-07!155;UBERON:0008947!3.11e-07!38;UBERON:0003258!3.11e-07!38;UBERON:0001004!5.52e-07!72;UBERON:0003100!7.84e-07!41;UBERON:0000065!7.87e-07!53;UBERON:0005911!7.90e-07!82;UBERON:0000072!8.06e-07!46 | ||
|ontology_enrichment_uberon_v019=UBERON:0005911;4.13e-09;36!UBERON:0000344;4.46e-09;20!UBERON:0000365;9.90e-09;5!UBERON:0000486;6.46e-08;12!UBERON:0005910;3.59e-07;6!UBERON:0003343;3.90e-07;4!UBERON:0004785;3.90e-07;4!UBERON:0004807;4.90e-07;22!UBERON:0003729;5.89e-07;13!UBERON:0003350;5.96e-07;8 | |ontology_enrichment_uberon_v019=UBERON:0005911;4.13e-09;36!UBERON:0000344;4.46e-09;20!UBERON:0000365;9.90e-09;5!UBERON:0000486;6.46e-08;12!UBERON:0005910;3.59e-07;6!UBERON:0003343;3.90e-07;4!UBERON:0004785;3.90e-07;4!UBERON:0004807;4.90e-07;22!UBERON:0003729;5.89e-07;13!UBERON:0003350;5.96e-07;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.02e-11,160;UBERON:0000925,2.02e-11,160;UBERON:0006595,2.02e-11,160;UBERON:0000344,4.15e-09,20;UBERON:0000365,1.22e-08,5;UBERON:0001007,3.53e-08,145;UBERON:0001555,3.53e-08,145;UBERON:0007026,3.53e-08,145;UBERON:0005911,7.29e-08,82;UBERON:0001004,1.18e-07,74;UBERON:0003343,3.67e-07,4;UBERON:0004785,3.67e-07,4;UBERON:0005910,4.25e-07,6;UBERON:0003729,6.27e-07,13;UBERON:0003350,7.17e-07,8;UBERON:0000065,8.37e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,3.48900583986214,0.436882744260345,0.791300934685361,0.247532705920093,0.662794751455832,0,0,0,0,2.58554221961255,0.816002764977012,1.25381888591235,1.14494394852423,2.46373965131192,0.125542639594803,0.382067028739756,0.0821005894499457,0.157421562627358,0,0,0,22.0661093874943,7.53014796945625,19.227208528673,0.154934401160603,0.568676929949686,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0.276350017785848,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,1.45718115317017,1.85392221392215,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0.718618141816238,0,0,0,0,0,0,0,0.717558542755448,0,0,0,0,0,0,0.168776332241266,0.0974370051611986,0.757301322732344,0,0,1.06502877754984,0,0,6.1843473012255,3.00020732649918,2.00763216772303,0.365921118388786,0,0.116193942869518,0.207322110030741,0.252320850875628,1.45990943630332,0,0,0,0,0,0.591534000199219,1.18009283054671,0.241011029883482,0.441175890929576,1.08939722046203,0.237270619111097,0.674156540800822,1.17732879075208,1.92373578473195,0,0,0,0,0,0,0,0,3.44367627920718,0.171567810298526,3.29250856225877,8.99214026060957,0.603173834469785,2.77765335475589,0,0,0,0.115930404975077,0,0,0,0,1.58040879591855,0.858486162094873,0,0,0,2.81201501960331,1.34385702559088,2.69372684760534,0.179117045405697,0.290633938513962,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904902010304444,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0.791951872933429,0,0.871533458600294,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,1.01637849688985,2.60279707715243,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173767228936166,0,0,0,0,0,2.12189300012382,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.246381468041427,0,0.232420756919918,1.0877350463246,1.00253235151642,1.01289087829486,0.459257792658427,0,0,0.902399225814824,1.07821471946181,0.784349769176855,0,0.316654886678627,0,0,0.215915916102139,0,0,0,0.509752546090077,0.831076008928724,0,0,0,1.53870075069834,0,0.976135183992909,0.103041011647722,0,0,5.16838984196555,3.90036147621913,0,0.870036464629098,1.84858340537573,0.767518373630648,0.689182862422653,0.644521469209642,0.870100163485371,0.255679882248303,0.0890320356467374,2.97512847649761,0,23.0979009615197,1.11273558941105,0,0.31481234683064,0,0,0,0.869932992075073,0,0.143124886741991,0,0,0,0,0,0.318203247925937,0,0.179872457583315,0,0.117812402345686,0,0,0,0.975267478179181,0,0,0.409499734223957,0.707027159768564,0,0,0,0,0,0,0,0,0,1.00387946542836,0,0,0.709522128141196,0,0,0,0,13.6635400070227,8.04362730642945,15.2447378805852,0.188287601553558,5.16606447205476,5.05414427002877,2.21715076768338,3.21612760289743,0,0,0,0,0,0,0,0,0.640944426764839,0,0.980160863924127,0.185803175125719,0.28853842595289,0,0,0.997896857164083,0.191505370132367,0.211673582723883,0,0,0,0,2.50634477090067,0,0,0,0,0.343505344755765,0,0,0.166849141711909,0,0,0,0,0,0,0.18714054040822,0,0.36408156524854,0.780103689942349,1.70481688083848,0.47748896947538,0.296964680832639,0.921482106297696,0,0,0,0,0,0.398495976502139,0,0,0.613612095012929,0,0,2.06697207638852,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,5.12070517284748,2.03402920234213,9.21911958894952,0,0.874813840149763,0,0,0,0,0,0,0,0.544692317594951,0.41827123283581,0.0769502585037971,0,0.23056390438806,0.359030577639089,0,3.50901275705111,0.183195186803725,8.52855641629816,0,0.156980256395025,0,0.676786981851542,0.392125068635479,1.34257269580674,8.34916423986414,0.635746315921515,7.38493225848095,29.7083710849649,1.41353071433941,0,0,0.0884575645033392,0,0,0,0,0,0,0,1.27718352450966,13.5008587063142,1.94224303627274,0,0,0,0.126373159256976,0.901940516486955,0,0,0.330991955875499,0,0,7.39984819677461,0.416024019039416,2.2562765983567,3.91969589657511,34.823682632161,0,1.0319161948297,0.387025325156341,0.292357268344742,0.0821154570532092,0,0,0,0.274083849293502,2.18586072873289,0,0.977756913674015,0.881747022766871,0,2.59752492456769,2.4495370916198,1.37443915399099,0.171594997861965,64.5365494986911,0.745515213392595,0.942776138467182,3.26170094576674,4.18411385249333,10.7098128518138,0.866851769704557,0,0,0,0,0,0,0,0,0,0,0,0,0,3.49487848582361,0,0,0.202210631562555,1.96854963029498,0.0846733320657845,0,0,0.321506296930038,6.18927464687552,7.89336642255452,0.2249738915515,3.0952078182318,0,0.670869375198532,0,0,0.211200673038813,0.537862017998534,22.4540780863751,0,0,2.79695391420225,0,0,0.653174720218818,1.19730191562487,0.574647645245373,0.851940108927109,0.906496732161005,0,0,0,0.13223260174269,0,0.704815022316672,0,0,0,0,0.988058159489721,0,10.2134601243229,0,0.2506898940227,0,0,0.628216385000937,0,0,0,0.573409195690071,0.110929051536852,0,0.553394539744923,3.49945142293898,1.0615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| ||
|short_description=p@chr20:52369856..52369863,- | |short_description=p@chr20:52369856..52369863,- | ||
}} | }} |
Latest revision as of 15:30, 28 July 2015
Short description: | p@chr20:52369856..52369863, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:52369856..52369863, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 2.76e-33 | 42 |
endodermal cell | 1.01e-31 | 58 |
epithelial cell | 2.08e-31 | 253 |
embryonic cell | 2.40e-14 | 250 |
respiratory epithelial cell | 3.08e-14 | 13 |
epithelial cell of alimentary canal | 2.20e-12 | 20 |
epithelial cell of tracheobronchial tree | 7.73e-12 | 9 |
epithelial cell of lower respiratory tract | 7.73e-12 | 9 |
squamous epithelial cell | 1.07e-09 | 63 |
general ecto-epithelial cell | 1.26e-07 | 14 |
epithelial cell of uterus | 2.53e-07 | 6 |
stromal cell of endometrium | 2.53e-07 | 6 |
ectodermal cell | 3.72e-07 | 72 |
transitional epithelial cell | 4.82e-07 | 4 |
urothelial cell | 4.82e-07 | 4 |
epithelial cell of pancreas | 6.03e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.02e-11 | 160 |
endoderm | 2.02e-11 | 160 |
presumptive endoderm | 2.02e-11 | 160 |
mucosa | 4.15e-09 | 20 |
urothelium | 1.22e-08 | 5 |
digestive system | 3.53e-08 | 145 |
digestive tract | 3.53e-08 | 145 |
primitive gut | 3.53e-08 | 145 |
endo-epithelium | 7.29e-08 | 82 |
respiratory system | 1.18e-07 | 74 |
mucosa of oral region | 3.67e-07 | 4 |
respiratory system mucosa | 3.67e-07 | 4 |
transitional epithelium | 4.25e-07 | 6 |
mouth mucosa | 6.27e-07 | 13 |
epithelium of mucosa | 7.17e-07 | 8 |
respiratory tract | 8.37e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.64e-22 | 106 |
cell type cancer | 3.91e-20 | 143 |
cancer | 1.16e-19 | 235 |
disease of cellular proliferation | 8.20e-19 | 239 |
adenocarcinoma | 1.65e-13 | 25 |
squamous cell carcinoma | 2.16e-13 | 14 |
organ system cancer | 4.98e-08 | 137 |
female reproductive organ cancer | 1.70e-07 | 27 |
female reproductive endometrioid cancer | 2.53e-07 | 6 |
pancreatic cancer | 6.03e-07 | 4 |
reproductive organ cancer | 9.26e-07 | 29 |