FFCP PHASE1:Hg19::chr1:235493776..235493807,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:235493776..235493807,+ | |||
|description=CAGE_peak_at_chr1:235493776..235493807,+ | |description=CAGE_peak_at_chr1:235493776..235493807,+ | ||
|id=chr1:235493776..235493807,+ | |id=chr1:235493776..235493807,+ | ||
|ontology_enrichment_celltype=CL:0000066!9.31e-09!254 | |ontology_enrichment_celltype=CL:0000066!9.31e-09!254 | ||
|ontology_enrichment_celltype_v019=CL:0002573;6.91e-09;2!CL:0000167;6.68e-07;1!CL:0000164;6.68e-07;1!CL:0000502;6.68e-07;1!CL:0000172;6.68e-07;1!CL:0000173;6.68e-07;1!CL:0002251;7.10e-07;20 | |ontology_enrichment_celltype_v019=CL:0002573;6.91e-09;2!CL:0000167;6.68e-07;1!CL:0000164;6.68e-07;1!CL:0000502;6.68e-07;1!CL:0000172;6.68e-07;1!CL:0000173;6.68e-07;1!CL:0002251;7.10e-07;20 | ||
|ontology_enrichment_celltype_v019_2=CL:0002573,9.82e-09,2;CL:0000066,4.14e-07,253;CL:0002251,8.94e-07,20;CL:0000167,9.18e-07,1;CL:0000164,9.18e-07,1;CL:0000502,9.18e-07,1;CL:0000172,9.18e-07,1;CL:0000173,9.18e-07,1;CL:0002351,9.18e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0009497;4.83e-11;13!UBERON:0001041;1.55e-08;30!UBERON:0008425;1.59e-07;1!CL:0002351;6.68e-07;1 | |ontology_enrichment_development_v019=UBERON:0009497;4.83e-11;13!UBERON:0001041;1.55e-08;30!UBERON:0008425;1.59e-07;1!CL:0002351;6.68e-07;1 | ||
|ontology_enrichment_disease=DOID:0050687!4.89e-30!143;DOID:305!1.21e-29!106;DOID:14566!6.62e-26!239;DOID:162!5.70e-25!235;DOID:299!8.08e-08!25;DOID:0050686!8.52e-07!137 | |ontology_enrichment_disease=DOID:0050687!4.89e-30!143;DOID:305!1.21e-29!106;DOID:14566!6.62e-26!239;DOID:162!5.70e-25!235;DOID:299!8.08e-08!25;DOID:0050686!8.52e-07!137 | ||
|ontology_enrichment_disease_v019=DOID:4468;6.69e-13;2!DOID:7;1.92e-08;39!DOID:299;9.29e-08;25!DOID:1036;2.12e-07;8!DOID:4430;6.68e-07;1 | |ontology_enrichment_disease_v019=DOID:4468;6.69e-13;2!DOID:7;1.92e-08;39!DOID:299;9.29e-08;25!DOID:1036;2.12e-07;8!DOID:4430;6.68e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:305,2.61e-19,106;DOID:14566,3.50e-17,239;DOID:0050687,2.73e-16,143;DOID:162,7.04e-15,235;DOID:4468,5.29e-13,2;DOID:7,1.76e-10,39;DOID:299,9.91e-08,25;DOID:1036,1.95e-07,8;DOID:4430,9.18e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001737!6.80e-12!9;UBERON:0001007!1.95e-08!155;UBERON:0001555!1.95e-08!155;UBERON:0007026!1.95e-08!155;UBERON:0004921!6.14e-08!129;UBERON:0004185!6.14e-08!129;UBERON:0000077!2.44e-07!130;UBERON:0004119!3.04e-07!169;UBERON:0000925!3.04e-07!169;UBERON:0006595!3.04e-07!169;UBERON:0000344!7.56e-07!12 | |ontology_enrichment_uberon=UBERON:0001737!6.80e-12!9;UBERON:0001007!1.95e-08!155;UBERON:0001555!1.95e-08!155;UBERON:0007026!1.95e-08!155;UBERON:0004921!6.14e-08!129;UBERON:0004185!6.14e-08!129;UBERON:0000077!2.44e-07!130;UBERON:0004119!3.04e-07!169;UBERON:0000925!3.04e-07!169;UBERON:0006595!3.04e-07!169;UBERON:0000344!7.56e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0003343;2.00e-13;4!UBERON:0004785;2.00e-13;4!UBERON:0002394;3.79e-13;4!UBERON:0003928;3.79e-13;4!UBERON:0002294;5.80e-13;7!UBERON:0001173;5.80e-13;7!UBERON:0002423;2.03e-10;25!UBERON:0000974;4.09e-09;6!UBERON:0004913;6.68e-07;1!UBERON:0003703;6.68e-07;1!UBERON:0001174;6.68e-07;1!UBERON:0004914;6.68e-07;1!UBERON:0000344;7.10e-07;20!UBERON:0001052;9.20e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0003343;2.00e-13;4!UBERON:0004785;2.00e-13;4!UBERON:0002394;3.79e-13;4!UBERON:0003928;3.79e-13;4!UBERON:0002294;5.80e-13;7!UBERON:0001173;5.80e-13;7!UBERON:0002423;2.03e-10;25!UBERON:0000974;4.09e-09;6!UBERON:0004913;6.68e-07;1!UBERON:0003703;6.68e-07;1!UBERON:0001174;6.68e-07;1!UBERON:0004914;6.68e-07;1!UBERON:0000344;7.10e-07;20!UBERON:0001052;9.20e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,2.77e-13,4;UBERON:0004785,2.77e-13,4;UBERON:0009497,2.38e-10,25;UBERON:0000015,2.38e-10,25;UBERON:0002423,2.38e-10,25;UBERON:0006235,2.38e-10,25;UBERON:0004161,2.38e-10,25;UBERON:0002294,5.33e-10,9;UBERON:0001173,5.33e-10,9;UBERON:0004912,5.33e-10,9;UBERON:0008835,7.54e-09,22;UBERON:0003894,7.54e-09,22;UBERON:0002394,9.28e-09,6;UBERON:0003928,9.28e-09,6;UBERON:0009854,1.93e-08,23;UBERON:0007499,1.02e-07,25;UBERON:0001007,1.22e-07,145;UBERON:0001555,1.22e-07,145;UBERON:0007026,1.22e-07,145;UBERON:0009856,2.12e-07,26;UBERON:0003929,5.17e-07,54;UBERON:0004913,8.67e-07,1;UBERON:0003703,8.67e-07,1;UBERON:0001174,8.67e-07,1;UBERON:0004914,8.67e-07,1;UBERON:0000344,8.94e-07,20 | |||
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|short_description=p@chr1:235493776..235493807,+ | |short_description=p@chr1:235493776..235493807,+ | ||
}} | }} |
Latest revision as of 05:20, 28 July 2015
Short description: | p@chr1:235493776..235493807, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:235493776..235493807, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Schwann cell | 9.82e-09 | 2 |
epithelial cell | 4.14e-07 | 253 |
epithelial cell of alimentary canal | 8.94e-07 | 20 |
peptide hormone secreting cell | 9.18e-07 | 1 |
enteroendocrine cell | 9.18e-07 | 1 |
type D enteroendocrine cell | 9.18e-07 | 1 |
somatostatin secreting cell | 9.18e-07 | 1 |
pancreatic D cell | 9.18e-07 | 1 |
progenitor cell of endocrine pancreas | 9.18e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 2.77e-13 | 4 |
respiratory system mucosa | 2.77e-13 | 4 |
epithelium of foregut-midgut junction | 2.38e-10 | 25 |
anatomical boundary | 2.38e-10 | 25 |
hepatobiliary system | 2.38e-10 | 25 |
foregut-midgut junction | 2.38e-10 | 25 |
septum transversum | 2.38e-10 | 25 |
biliary system | 5.33e-10 | 9 |
biliary tree | 5.33e-10 | 9 |
biliary bud | 5.33e-10 | 9 |
hepatic diverticulum | 7.54e-09 | 22 |
liver primordium | 7.54e-09 | 22 |
bile duct | 9.28e-09 | 6 |
digestive system duct | 9.28e-09 | 6 |
digestive tract diverticulum | 1.93e-08 | 23 |
epithelial sac | 1.02e-07 | 25 |
digestive system | 1.22e-07 | 145 |
digestive tract | 1.22e-07 | 145 |
primitive gut | 1.22e-07 | 145 |
sac | 2.12e-07 | 26 |
gut epithelium | 5.17e-07 | 54 |
hepatopancreatic ampulla | 8.67e-07 | 1 |
extrahepatic bile duct | 8.67e-07 | 1 |
common bile duct | 8.67e-07 | 1 |
duodenal papilla | 8.67e-07 | 1 |
mucosa | 8.94e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.61e-19 | 106 |
disease of cellular proliferation | 3.50e-17 | 239 |
cell type cancer | 2.73e-16 | 143 |
cancer | 7.04e-15 | 235 |
clear cell adenocarcinoma | 5.29e-13 | 2 |
disease of anatomical entity | 1.76e-10 | 39 |
adenocarcinoma | 9.91e-08 | 25 |
chronic leukemia | 1.95e-07 | 8 |
somatostatinoma | 9.18e-07 | 1 |