FFCP PHASE1:Hg19::chr1:226878935..226878939,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:226878935..226878939,- to FFCP PHASE1:Hg19::chr1:226878935..226878939,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:226878935..226878939,- | |||
|coexpression_cluster_id=C673 | |||
|description=CAGE_peak_at_chr1:226878935..226878939,- | |||
|id=chr1:226878935..226878939,- | |||
|ontology_enrichment_celltype=CL:0000542!1.24e-18!53;CL:0000051!1.24e-18!53;CL:0000838!3.43e-18!52;CL:0000037!1.82e-16!172;CL:0000566!1.82e-16!172;CL:0002087!5.20e-16!119;CL:0000738!9.00e-16!140;CL:0000988!7.12e-15!182;CL:0002032!4.03e-14!165;CL:0000837!4.03e-14!165;CL:0002031!5.23e-14!124;CL:0000791!7.32e-12!18;CL:0000789!7.32e-12!18;CL:0002420!7.32e-12!18;CL:0002419!7.32e-12!18;CL:0000790!7.32e-12!18;CL:0000084!8.32e-11!25;CL:0000827!8.32e-11!25;CL:0000625!1.60e-07!11;CL:0000945!9.67e-07!24;CL:0000826!9.67e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.35e-15;18!CL:0000789;1.35e-15;18!CL:0002419;1.35e-15;18!CL:0000084;3.47e-13;25!CL:0000625;1.10e-11;11!CL:0000542;6.52e-09;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.08e-15,18;CL:0000789,1.08e-15,18;CL:0002420,1.08e-15,18;CL:0002419,1.08e-15,18;CL:0000790,1.08e-15,18;CL:0000838,8.55e-15,52;CL:0000542,1.93e-14,53;CL:0000051,1.93e-14,53;CL:0000084,3.65e-13,25;CL:0000827,3.65e-13,25;CL:0002087,1.54e-12,115;CL:0000738,5.45e-12,136;CL:0000625,9.35e-12,11;CL:0002031,1.65e-09,120;CL:0000037,2.12e-09,168;CL:0000988,1.31e-08,177;CL:0002032,2.25e-07,161;CL:0000837,2.25e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000790;1.35e-15;18!CL:0000051;6.52e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.64e-20!115;UBERON:0001049!1.17e-11!57;UBERON:0005068!1.17e-11!57;UBERON:0006241!1.17e-11!57;UBERON:0007135!1.17e-11!57;UBERON:0002780!1.22e-09!41;UBERON:0001890!1.22e-09!41;UBERON:0006240!1.22e-09!41;UBERON:0002020!2.69e-09!34;UBERON:0003528!2.69e-09!34;UBERON:0003080!3.55e-09!42;UBERON:0001893!6.04e-09!34;UBERON:0002616!7.61e-09!59;UBERON:0002791!1.29e-08!33;UBERON:0002346!2.37e-08!90;UBERON:0001017!3.24e-08!82;UBERON:0000955!4.94e-08!69;UBERON:0006238!4.94e-08!69;UBERON:0003075!7.12e-08!86;UBERON:0007284!7.12e-08!86;UBERON:0005743!8.05e-08!86;UBERON:0001869!9.27e-08!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0001876;2.32e-08;2!UBERON:0000349;4.47e-07;5!UBERON:0002420;9.60e-07;9!UBERON:0007245;9.60e-07;9!UBERON:0010009;9.60e-07;9!UBERON:0010011;9.60e-07;9!UBERON:0000454;9.60e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001876,2.91e-08,2;UBERON:0001049,7.48e-08,56;UBERON:0005068,7.48e-08,56;UBERON:0006241,7.48e-08,56;UBERON:0007135,7.48e-08,56;UBERON:0000349,4.21e-07,5;UBERON:0002420,9.35e-07,9;UBERON:0007245,9.35e-07,9;UBERON:0010009,9.35e-07,9;UBERON:0010011,9.35e-07,9;UBERON:0000454,9.35e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0.204000691244253,0,0,0.136874425072884,0.251085279189606,0.229240217243854,0.0821005894499457,0.0787107813136792,0,0.767658796194425,0.154816123316076,0,0,0,0.387336002901508,0.142169232487422,0.587200878669695,2.21598163412751,2.80762226458198,3.03815219002193,0.223915474239924,0,0,0.145398238779565,0,0.242584061187816,0.232429036905685,0.411167888021826,0.309706370895104,0,0,0,0,0,0,0.188242339542605,0.272906150057846,0,0,0,1.27867425159808,0,0.199463657621632,0,0,0,0,0,0,0,0.605399502633369,0,0,0.211255286311942,0.212604299965044,0,0.44931452458598,0,0,0.570025487482497,0.19891667719909,0.182664153764634,5.27988733383968,0.546138611262131,0,1.28019066769952,0.400395987036012,0.574752439954483,0,0.954053754535364,0,1.76171156811282,2.29363936875137,0,0,0,2.9506465517075,13.3623659334716,10.6912779479745,0.167186495390678,0.977766799900771,0.473447805734733,0,0,0.589211814949674,0,0,0.896639238079726,1.8208308658383,1.15106533222573,1.93445012450094,0.289803085735052,0.444859689486181,1.33770414044857,1.04535523804977,0.453237370790265,0.383220493601921,0.34362744548263,0.506039384039006,0.95569624297229,0,1.90090408889675,0.301150238155546,0.255973222308837,2.49861453104692,0.947109008176067,1.64225599384209,1.00803371612366,3.4767225451856,6.66192257860875,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.175669571386252,0.458426764241994,0,0,0.324547393654683,0.174129737299267,0.398873881556595,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0.775250277507987,0,0,0,0,0,0.367663080345869,0,0.17859945656816,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404132016209064,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0.122834317311768,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0.643240938192885,0,0,0,0.118306800039844,0,0,0,0,0,0.134831308160164,0,0,0.738155454624648,0,0,0,0,0,0.590789906681404,2.20731549707325,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0.190254152234598,0,0,0.738651018262192,0,1.18904929830983,0,0,0,0,0,0,0.985326475791887,0,0.414656231081544,0,0,0,0,0,0,0,0,0.285826432630578,0,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,1.2162378064119,0.502257091432126,0,0,0,0,0.144781306667579,0,0,0.112085143993527,0.985153801009636,4.9594342217689,4.36366323351144,0,0,0.773288812777695,0,0,0,5.9832291840805,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,2.80428461064202,1.28073069364133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0.219259876645935,0.261435451024901,0,0,0,0.206082023295445,0.0915694648183434,0.165018999841176,0,0,0,0,0.154048617114644,0,0,0,0,0.0852266274161009,0.0890320356467374,0.165284915360978,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0,0,0.952927101831156,0.822724546172388,0,0,1.58625035258854,0,0,0,0.371606350251437,0.144269212976445,0.426851060090485,0.318852545457645,0.59873811429845,0,0.635020748171649,0.324621940274555,0.280797178113459,0.228234679033192,0.313359791546046,0,0,0.1605880751037,0,0,1.03051603426729,0.307240764308458,0,0,0.19538809540204,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0,0,0,0,2.98244294329889,1.1253553312841,0,0,0.211125408127993,0.19924798825107,0.276283915531148,0,0.102268682502155,0,0,0,0,0,0.197286811273867,0,0,0,0.185536196323703,0,0,0.174919999992391,0,0,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0.331737779793674,0,0.219385397153973,0,0,0.769502585037971,0,0.23056390438806,0,0.108647371922008,0,0,0,1.02193298195737,0.31396051279005,0.498635045700469,0,0,0,0,0.476809736941136,0.210998064528027,0,0,0,0,0.176915129006678,0,0.296521128680622,0,0,0.741412462787447,0.802577647298789,1.1713222286267,0.547364367646998,0,0,1.18375320854817,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0,0,0.0870592065804026,0.52418000472609,1.0319161948297,0,0,0,0,0,0.225980740780532,0,0,0.126621591911757,0,0,0.426905989478705,0,0.144090417154106,0,0,0.432164393964449,0,0.235694034616795,0,0,0,0,0.600420288709789,0.958337652243951,0,0,0,0.279282401272254,1.60412296808179,0.717873024576814,0,0.858452096273142,0.223171457441873,0.134366944973453,0,0,0,0,0,0,0,1.59045937961861,0.953423842781029,0,0.137539436597234,0,0,0,0.0607495566580247,0,0.0788057072991982,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0.775697738169303,2.77688463659649,0,0,0.106787412567695,0,2.07119527673598,0.992332043623902,0.592834895693833,0.974340787047167,0,0,0.2506898940227,0.612691153526923,0,0.628216385000937,0,0.244052529803926,0.250381861413,0,1.88579387612649,0.558867626472451,0.276697269872462,0.124980407962107,0.303298235083296,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0.151230923763239,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|short_description=p@chr1:226878935..226878939,- | |||
}} | }} |
Latest revision as of 04:36, 28 July 2015
Short description: | p@chr1:226878935..226878939, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:226878935..226878939, - |
Coexpression cluster: | C673_CD4_Neutrophils_blood_CD8_skeletal_parietal_temporal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.08e-15 | 18 |
alpha-beta T cell | 1.08e-15 | 18 |
immature T cell | 1.08e-15 | 18 |
mature T cell | 1.08e-15 | 18 |
immature alpha-beta T cell | 1.08e-15 | 18 |
lymphoid lineage restricted progenitor cell | 8.55e-15 | 52 |
lymphocyte | 1.93e-14 | 53 |
common lymphoid progenitor | 1.93e-14 | 53 |
T cell | 3.65e-13 | 25 |
pro-T cell | 3.65e-13 | 25 |
nongranular leukocyte | 1.54e-12 | 115 |
leukocyte | 5.45e-12 | 136 |
CD8-positive, alpha-beta T cell | 9.35e-12 | 11 |
hematopoietic lineage restricted progenitor cell | 1.65e-09 | 120 |
hematopoietic stem cell | 2.12e-09 | 168 |
hematopoietic cell | 1.31e-08 | 177 |
hematopoietic oligopotent progenitor cell | 2.25e-07 | 161 |
hematopoietic multipotent progenitor cell | 2.25e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
amygdala | 2.91e-08 | 2 |
neural tube | 7.48e-08 | 56 |
neural rod | 7.48e-08 | 56 |
future spinal cord | 7.48e-08 | 56 |
neural keel | 7.48e-08 | 56 |
limbic system | 4.21e-07 | 5 |
basal ganglion | 9.35e-07 | 9 |
nuclear complex of neuraxis | 9.35e-07 | 9 |
aggregate regional part of brain | 9.35e-07 | 9 |
collection of basal ganglia | 9.35e-07 | 9 |
cerebral subcortex | 9.35e-07 | 9 |