FFCP PHASE1:Hg19::chr1:185381713..185381720,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:185381713..185381720,- | |||
|coexpression_cluster_id=C513 | |coexpression_cluster_id=C513 | ||
|description=CAGE_peak_at_chr1:185381713..185381720,- | |description=CAGE_peak_at_chr1:185381713..185381720,- | ||
|id=chr1:185381713..185381720,- | |id=chr1:185381713..185381720,- | ||
|ontology_enrichment_celltype=CL:0002159!4.48e-14!13;CL:0002327!4.45e-13!4;CL:0002202!4.99e-13!9;CL:0002632!4.99e-13!9;CL:0002368!1.08e-11!13;CL:0002076!2.38e-11!43;CL:0000066!4.36e-11!254;CL:0000068!7.06e-11!3;CL:0000069!7.06e-11!3;CL:0000307!7.06e-11!3;CL:0000377!7.06e-11!3;CL:0002328!8.28e-11!3;CL:0000362!8.76e-10!8;CL:0000453!1.45e-09!5;CL:0000076!4.46e-09!62;CL:0000223!1.17e-08!59;CL:0000240!1.21e-08!6;CL:0000311!1.21e-08!6;CL:0000079!1.21e-08!6;CL:0000237!1.21e-08!6;CL:0000036!1.21e-08!6;CL:0000357!1.21e-08!6;CL:0000114!1.21e-08!6;CL:0000317!1.99e-07!2;CL:1000448!1.99e-07!2;CL:0002308!1.99e-07!2;CL:0002140!1.99e-07!2;CL:0002077!3.19e-07!33;CL:0001014!4.73e-07!2;CL:0001016!4.73e-07!2 | |ontology_enrichment_celltype=CL:0002159!4.48e-14!13;CL:0002327!4.45e-13!4;CL:0002202!4.99e-13!9;CL:0002632!4.99e-13!9;CL:0002368!1.08e-11!13;CL:0002076!2.38e-11!43;CL:0000066!4.36e-11!254;CL:0000068!7.06e-11!3;CL:0000069!7.06e-11!3;CL:0000307!7.06e-11!3;CL:0000377!7.06e-11!3;CL:0002328!8.28e-11!3;CL:0000362!8.76e-10!8;CL:0000453!1.45e-09!5;CL:0000076!4.46e-09!62;CL:0000223!1.17e-08!59;CL:0000240!1.21e-08!6;CL:0000311!1.21e-08!6;CL:0000079!1.21e-08!6;CL:0000237!1.21e-08!6;CL:0000036!1.21e-08!6;CL:0000357!1.21e-08!6;CL:0000114!1.21e-08!6;CL:0000317!1.99e-07!2;CL:1000448!1.99e-07!2;CL:0002308!1.99e-07!2;CL:0002140!1.99e-07!2;CL:0002077!3.19e-07!33;CL:0001014!4.73e-07!2;CL:0001016!4.73e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002202;3.16e-32;9!CL:0002632;3.16e-32;9!CL:0002328;3.29e-25;3!CL:0000307;4.20e-25;3!CL:0002368;3.40e-22;13!CL:0002327;8.61e-19;4!CL:0000317;1.44e-16;2!CL:1000448;1.44e-16;2!CL:0002308;1.44e-16;2!CL:0002140;1.44e-16;2!CL:0002076;6.30e-13;42!CL:0002251;8.13e-10;20!CL:0002159;3.29e-09;14!CL:0002336;3.82e-09;1!CL:0002261;3.82e-09;1!CL:0002170;3.82e-09;1!CL:0000362;1.83e-08;9!CL:0000622;3.67e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002202,2.84e-32,9;CL:0002632,2.84e-32,9;CL:0000068,2.80e-25,3;CL:0000069,2.80e-25,3;CL:0000307,2.80e-25,3;CL:0000377,2.80e-25,3;CL:0002328,4.21e-25,3;CL:0002368,3.16e-22,13;CL:0002076,2.21e-21,42;CL:0002327,6.18e-19,4;CL:0000223,6.05e-18,58;CL:0000317,1.70e-16,2;CL:1000448,1.70e-16,2;CL:0002308,1.70e-16,2;CL:0002140,1.70e-16,2;CL:0000066,1.57e-14,253;CL:0000076,2.02e-13,63;CL:0002251,7.98e-10,20;CL:0002159,3.92e-09,14;CL:0002336,5.72e-09,1;CL:0002261,5.72e-09,1;CL:0002170,5.72e-09,1;CL:0000362,2.04e-08,9;CL:0000622,3.91e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000377;4.20e-25;3!CL:0000223;1.57e-08;58 | |||
|ontology_enrichment_disease=DOID:1749!9.83e-17!14 | |ontology_enrichment_disease=DOID:1749!9.83e-17!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.75e-20;14!DOID:3151;3.82e-09;1!DOID:3149;3.82e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.84e-20,14;DOID:3151,3.53e-09,1;DOID:3149,3.53e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0001911!4.45e-13!4;UBERON:0005333!4.45e-13!4;UBERON:0008425!4.45e-13!4;UBERON:0005311!4.45e-13!4;UBERON:0000344!3.24e-11!12;UBERON:0004815!8.28e-11!3;UBERON:0002031!8.28e-11!3;UBERON:0003729!2.13e-10!5;UBERON:0002185!3.46e-08!4;UBERON:0007196!4.48e-08!14;UBERON:0001558!4.48e-08!14;UBERON:0003343!1.00e-07!4;UBERON:0004785!1.00e-07!4;UBERON:0001003!1.65e-07!14;UBERON:0007376!1.65e-07!14;UBERON:0007383!1.65e-07!14;UBERON:0002419!1.99e-07!2;UBERON:0007771!1.99e-07!2;UBERON:0003297!1.99e-07!2;UBERON:0001821!1.99e-07!2;UBERON:0003487!1.99e-07!2;UBERON:0001820!1.99e-07!2;UBERON:0005089!1.99e-07!2;UBERON:0005088!1.99e-07!2 | |ontology_enrichment_uberon=UBERON:0001911!4.45e-13!4;UBERON:0005333!4.45e-13!4;UBERON:0008425!4.45e-13!4;UBERON:0005311!4.45e-13!4;UBERON:0000344!3.24e-11!12;UBERON:0004815!8.28e-11!3;UBERON:0002031!8.28e-11!3;UBERON:0003729!2.13e-10!5;UBERON:0002185!3.46e-08!4;UBERON:0007196!4.48e-08!14;UBERON:0001558!4.48e-08!14;UBERON:0003343!1.00e-07!4;UBERON:0004785!1.00e-07!4;UBERON:0001003!1.65e-07!14;UBERON:0007376!1.65e-07!14;UBERON:0007383!1.65e-07!14;UBERON:0002419!1.99e-07!2;UBERON:0007771!1.99e-07!2;UBERON:0003297!1.99e-07!2;UBERON:0001821!1.99e-07!2;UBERON:0003487!1.99e-07!2;UBERON:0001820!1.99e-07!2;UBERON:0005089!1.99e-07!2;UBERON:0005088!1.99e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;3.29e-25;3!UBERON:0002031;3.29e-25;3!UBERON:0007196;3.52e-19;15!UBERON:0001558;3.52e-19;15!UBERON:0001911;8.61e-19;4!UBERON:0002419;1.44e-16;2!UBERON:0007771;1.44e-16;2!UBERON:0003297;1.44e-16;2!UBERON:0001821;1.44e-16;2!UBERON:0003487;1.44e-16;2!UBERON:0001820;1.44e-16;2!UBERON:0002185;2.25e-15;5!UBERON:0000485;3.90e-11;7!UBERON:0003126;4.32e-11;7!UBERON:0001005;4.32e-11;7!UBERON:0003343;3.68e-09;4!UBERON:0004785;3.68e-09;4!UBERON:0005178;2.49e-08;34!UBERON:0002224;2.49e-08;34!UBERON:0005181;1.83e-07;35!UBERON:0000072;3.31e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,4.21e-25,3;UBERON:0002031,4.21e-25,3;UBERON:0007196,3.30e-19,15;UBERON:0001558,3.30e-19,15;UBERON:0001911,6.18e-19,4;UBERON:0005333,6.18e-19,4;UBERON:0008425,6.18e-19,4;UBERON:0005311,6.18e-19,4;UBERON:0002419,1.70e-16,2;UBERON:0007771,1.70e-16,2;UBERON:0003297,1.70e-16,2;UBERON:0001821,1.70e-16,2;UBERON:0003487,1.70e-16,2;UBERON:0001820,1.70e-16,2;UBERON:0005089,1.70e-16,2;UBERON:0005088,1.70e-16,2;UBERON:0002185,2.61e-15,5;UBERON:0003126,3.64e-11,7;UBERON:0001005,3.64e-11,7;UBERON:0000076,9.67e-10,8;UBERON:0003343,3.26e-09,4;UBERON:0004785,3.26e-09,4;UBERON:0005085,9.35e-09,31;UBERON:0000485,9.81e-09,9;UBERON:0005178,3.34e-08,34;UBERON:0002224,3.34e-08,34;UBERON:0005181,5.93e-08,35;UBERON:0005157,1.20e-07,47;UBERON:0005153,1.85e-07,37;UBERON:0008947,2.77e-07,38;UBERON:0003258,2.77e-07,38 | |||
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| ||
|short_description=p@chr1:185381713..185381720,- | |short_description=p@chr1:185381713..185381720,- | ||
}} | }} |
Latest revision as of 01:27, 28 July 2015
Short description: | p@chr1:185381713..185381720, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:185381713..185381720, - |
Coexpression cluster: | C513_Tracheal_Bronchial_squamous_bronchial_Small_oral_medulloblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 2.84e-32 | 9 |
epithelial cell of lower respiratory tract | 2.84e-32 | 9 |
duct epithelial cell | 2.80e-25 | 3 |
branched duct epithelial cell | 2.80e-25 | 3 |
tracheal epithelial cell | 2.80e-25 | 3 |
tracheoblast | 2.80e-25 | 3 |
bronchial epithelial cell | 4.21e-25 | 3 |
respiratory epithelial cell | 3.16e-22 | 13 |
endo-epithelial cell | 2.21e-21 | 42 |
mammary gland epithelial cell | 6.18e-19 | 4 |
endodermal cell | 6.05e-18 | 58 |
sebum secreting cell | 1.70e-16 | 2 |
epithelial cell of sweat gland | 1.70e-16 | 2 |
epithelial cell of skin gland | 1.70e-16 | 2 |
acinar cell of sebaceous gland | 1.70e-16 | 2 |
epithelial cell | 1.57e-14 | 253 |
squamous epithelial cell | 2.02e-13 | 63 |
epithelial cell of alimentary canal | 7.98e-10 | 20 |
general ecto-epithelial cell | 3.92e-09 | 14 |
buccal mucosa cell | 5.72e-09 | 1 |
endothelial cell of viscerocranial mucosa | 5.72e-09 | 1 |
keratinized cell of the oral mucosa | 5.72e-09 | 1 |
epidermal cell | 2.04e-08 | 9 |
acinar cell | 3.91e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 4.21e-25 | 3 |
epithelium of bronchus | 4.21e-25 | 3 |
tracheobronchial tree | 3.30e-19 | 15 |
lower respiratory tract | 3.30e-19 | 15 |
mammary gland | 6.18e-19 | 4 |
mammary bud | 6.18e-19 | 4 |
mammary ridge | 6.18e-19 | 4 |
mammary placode | 6.18e-19 | 4 |
skin gland | 1.70e-16 | 2 |
epidermis gland | 1.70e-16 | 2 |
gland of integumental system | 1.70e-16 | 2 |
sebaceous gland | 1.70e-16 | 2 |
skin sebaceous gland | 1.70e-16 | 2 |
sweat gland | 1.70e-16 | 2 |
sweat gland placode | 1.70e-16 | 2 |
sebaceous gland placode | 1.70e-16 | 2 |
bronchus | 2.61e-15 | 5 |
trachea | 3.64e-11 | 7 |
respiratory airway | 3.64e-11 | 7 |
external ectoderm | 9.67e-10 | 8 |
mucosa of oral region | 3.26e-09 | 4 |
respiratory system mucosa | 3.26e-09 | 4 |
ectodermal placode | 9.35e-09 | 31 |
simple columnar epithelium | 9.81e-09 | 9 |
thoracic cavity element | 3.34e-08 | 34 |
thoracic cavity | 3.34e-08 | 34 |
thoracic segment organ | 5.93e-08 | 35 |
epithelial fold | 1.20e-07 | 47 |
epithelial bud | 1.85e-07 | 37 |
respiratory primordium | 2.77e-07 | 38 |
endoderm of foregut | 2.77e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.84e-20 | 14 |
skin squamous cell carcinoma | 3.53e-09 | 1 |
keratoacanthoma | 3.53e-09 | 1 |