FFCP PHASE1:Hg19::chr1:153587360..153587377,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:153587360..153587377,- | |||
|coexpression_cluster_id=C3872 | |||
|description=CAGE_peak_at_chr1:153587360..153587377,- | |description=CAGE_peak_at_chr1:153587360..153587377,- | ||
|id=chr1:153587360..153587377,- | |id=chr1:153587360..153587377,- | ||
|ontology_enrichment_celltype=CL:0002076!2.03e-29!43;CL:0000223!1.08e-19!59;CL:0000066!2.95e-19!254;CL:0002368!1.45e-17!13;CL:0002159!2.61e-13!13;CL:0000244!5.81e-12!4;CL:0000731!5.81e-12!4;CL:0002327!4.25e-11!4;CL:0002251!4.43e-11!21;CL:0002328!2.53e-10!3;CL:0002231!9.79e-10!3;CL:0002621!1.95e-09!3;CL:0002202!1.48e-08!9;CL:0002632!1.48e-08!9;CL:0000575!4.79e-07!2 | |ontology_enrichment_celltype=CL:0002076!2.03e-29!43;CL:0000223!1.08e-19!59;CL:0000066!2.95e-19!254;CL:0002368!1.45e-17!13;CL:0002159!2.61e-13!13;CL:0000244!5.81e-12!4;CL:0000731!5.81e-12!4;CL:0002327!4.25e-11!4;CL:0002251!4.43e-11!21;CL:0002328!2.53e-10!3;CL:0002231!9.79e-10!3;CL:0002621!1.95e-09!3;CL:0002202!1.48e-08!9;CL:0002632!1.48e-08!9;CL:0000575!4.79e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002368;6.96e-42;13!CL:0002328;1.33e-27;3!CL:0002202;1.85e-24;9!CL:0002632;1.85e-24;9!CL:0002076;1.22e-20;42!CL:0002231;6.98e-13;3!CL:0000307;1.73e-12;3!CL:0002252;7.54e-10;1!CL:0000244;8.26e-10;4!CL:0000731;8.26e-10;4!CL:0000312;6.65e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,5.33e-42,13;CL:0002076,6.26e-28,42;CL:0002328,1.22e-27,3;CL:0002202,1.81e-24,9;CL:0002632,1.81e-24,9;CL:0000223,1.09e-19,58;CL:0002231,6.20e-13,3;CL:0000068,1.78e-12,3;CL:0000069,1.78e-12,3;CL:0000307,1.78e-12,3;CL:0000377,1.78e-12,3;CL:0002252,5.30e-10,1;CL:0000244,7.91e-10,4;CL:0000731,7.91e-10,4;CL:0000066,3.86e-08,253;CL:0000312,7.51e-08,5 | |||
|ontology_enrichment_development_v019=CL:0000223;1.13e-13;58!CL:0000377;1.73e-12;3!UBERON:0009143;7.54e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3151;7.54e-10;1!DOID:3149;7.54e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,1.17e-09,1;DOID:3149,1.17e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.73e-17!169;UBERON:0000925!4.73e-17!169;UBERON:0006595!4.73e-17!169;UBERON:0001004!3.10e-13!72;UBERON:0000065!2.99e-11!53;UBERON:0001911!4.25e-11!4;UBERON:0005333!4.25e-11!4;UBERON:0008425!4.25e-11!4;UBERON:0005311!4.25e-11!4;UBERON:0001007!1.07e-10!155;UBERON:0001555!1.07e-10!155;UBERON:0007026!1.07e-10!155;UBERON:0004815!2.53e-10!3;UBERON:0002031!2.53e-10!3;UBERON:0005911!1.08e-09!82;UBERON:0000365!1.45e-09!5;UBERON:0001949!1.95e-09!3;UBERON:0001723!3.53e-09!3;UBERON:0001033!3.53e-09!3;UBERON:0010056!3.53e-09!3;UBERON:0000166!4.88e-09!21;UBERON:0000161!6.05e-09!35;UBERON:0003729!1.52e-08!5;UBERON:0005153!1.70e-08!37;UBERON:0005910!5.80e-08!6;UBERON:0000165!7.02e-08!28;UBERON:0000930!7.02e-08!28;UBERON:0003102!7.92e-08!95;UBERON:0002185!8.17e-08!4;UBERON:0005157!8.99e-08!51;UBERON:0007196!2.82e-07!14;UBERON:0001558!2.82e-07!14;UBERON:0000344!3.00e-07!12;UBERON:0004921!5.67e-07!129;UBERON:0004185!5.67e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.33e-27;3!UBERON:0002031;1.33e-27;3!UBERON:0002185;8.11e-17;5!UBERON:0007196;1.21e-14;15!UBERON:0001558;1.21e-14;15!UBERON:0001043;2.67e-12;3!UBERON:0000485;3.58e-12;7!UBERON:0005178;7.32e-12;34!UBERON:0002224;7.32e-12;34!UBERON:0005181;3.70e-11;35!UBERON:0005795;7.54e-10;1!UBERON:0000065;2.21e-08;44!UBERON:0000365;5.12e-08;5!UBERON:0005911;3.40e-07;36!UBERON:0000486;4.27e-07;12!UBERON:0005910;8.15e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.22e-27,3;UBERON:0002031,1.22e-27,3;UBERON:0002185,7.70e-17,5;UBERON:0007196,1.19e-14,15;UBERON:0001558,1.19e-14,15;UBERON:0001043,1.89e-12,3;UBERON:0009143,1.89e-12,3;UBERON:0005178,6.51e-12,34;UBERON:0002224,6.51e-12,34;UBERON:0000065,6.58e-12,54;UBERON:0005181,1.50e-11,35;UBERON:0004119,3.41e-11,160;UBERON:0000925,3.41e-11,160;UBERON:0006595,3.41e-11,160;UBERON:0001004,2.75e-10,74;UBERON:0000485,1.36e-09,9;UBERON:0000365,4.95e-08,5;UBERON:0000915,1.59e-07,52;UBERON:0005910,7.92e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.51652734687356,3.91567694411725,4.80680213216824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,3.33705998505986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0.545492241181669,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491953754172454,0,1.20725313949488,0,3.01586917234893,0.370353780634118,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0.503946384596579,0.992425680696705,0.179117045405697,0.871901815541886,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,2.40607764363942,5.89318329189736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0,0,1.4875642382488,1.92190067365106,0.255225424989168,2.12431339796655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53955380360819,2.01090682660736,0,0,0.43050537267123,3.36942951335251,2.21715076768338,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.748562161632879,0,0,0,0,0,0,0.614321404198464,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0.260427761085233,0.174919999992391,0,0.910347586283997,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164230914106418,1.55182426381471,0,0.225980740780532,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0063040627978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0.366857197043358,0.115525666150338,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0.098150233615243,0.243835849964539,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,1.05868461514708,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0.26721740526556,0,0,0,0,0,0,1.70587185520785,0,0.0645889098360061,0,0,0,0.404234377916439,6.7492191848058,0.684466602170562,0.0673520530145875,0,0.332660356546013,0,0,0,0,0,0,1.22068853494722,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.51652734687356,3.91567694411725,4.80680213216824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,3.33705998505986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0.545492241181669,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491953754172454,0,1.20725313949488,0,3.01586917234893,0.370353780634118,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0.503946384596579,0.992425680696705,0.179117045405697,0.871901815541886,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,2.40607764363942,5.89318329189736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0,0,1.4875642382488,1.92190067365106,0.255225424989168,2.12431339796655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53955380360819,2.01090682660736,0,0,0.43050537267123,3.36942951335251,2.21715076768338,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.748562161632879,0,0,0,0,0,0,0.614321404198464,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0.260427761085233,0.174919999992391,0,0.910347586283997,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164230914106418,1.55182426381471,0,0.225980740780532,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0063040627978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0.366857197043358,0.115525666150338,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0.098150233615243,0.243835849964539,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,1.05868461514708,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0.26721740526556,0,0,0,0,0,0,1.70587185520785,0,0.0645889098360061,0,0,0,0.404234377916439,6.7492191848058,0.684466602170562,0.0673520530145875,0,0.332660356546013,0,0,0,0,0,0,1.22068853494722,0,0,0 | ||
|short_description=p@chr1:153587360..153587377,- | |short_description=p@chr1:153587360..153587377,- | ||
}} | }} |
Latest revision as of 21:47, 27 July 2015
Short description: | p@chr1:153587360..153587377, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:153587360..153587377, - |
Coexpression cluster: | C3872_tongue_Prostate_Bronchial_Sebocyte_Keratinocyte_Corneal_Urothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 5.33e-42 | 13 |
endo-epithelial cell | 6.26e-28 | 42 |
bronchial epithelial cell | 1.22e-27 | 3 |
epithelial cell of tracheobronchial tree | 1.81e-24 | 9 |
epithelial cell of lower respiratory tract | 1.81e-24 | 9 |
endodermal cell | 1.09e-19 | 58 |
epithelial cell of prostate | 6.20e-13 | 3 |
duct epithelial cell | 1.78e-12 | 3 |
branched duct epithelial cell | 1.78e-12 | 3 |
tracheal epithelial cell | 1.78e-12 | 3 |
tracheoblast | 1.78e-12 | 3 |
epithelial cell of esophagus | 5.30e-10 | 1 |
transitional epithelial cell | 7.91e-10 | 4 |
urothelial cell | 7.91e-10 | 4 |
epithelial cell | 3.86e-08 | 253 |
keratinocyte | 7.51e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.22e-27 | 3 |
epithelium of bronchus | 1.22e-27 | 3 |
bronchus | 7.70e-17 | 5 |
tracheobronchial tree | 1.19e-14 | 15 |
lower respiratory tract | 1.19e-14 | 15 |
esophagus | 1.89e-12 | 3 |
esophageal region | 1.89e-12 | 3 |
thoracic cavity element | 6.51e-12 | 34 |
thoracic cavity | 6.51e-12 | 34 |
respiratory tract | 6.58e-12 | 54 |
thoracic segment organ | 1.50e-11 | 35 |
endoderm-derived structure | 3.41e-11 | 160 |
endoderm | 3.41e-11 | 160 |
presumptive endoderm | 3.41e-11 | 160 |
respiratory system | 2.75e-10 | 74 |
simple columnar epithelium | 1.36e-09 | 9 |
urothelium | 4.95e-08 | 5 |
thoracic segment of trunk | 1.59e-07 | 52 |
transitional epithelium | 7.92e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.17e-09 | 1 |
keratoacanthoma | 1.17e-09 | 1 |