FFCP PHASE1:Hg19::chr1:12520398..12520406,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:12520398..12520406,+ | |||
|coexpression_cluster_id=C27 | |coexpression_cluster_id=C27 | ||
|description=CAGE_peak_at_chr1:12520398..12520406,+ | |description=CAGE_peak_at_chr1:12520398..12520406,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0004140;9.99e-30;1!UBERON:0010227;1.54e-29;1!UBERON:0005062;6.47e-29;4!UBERON:0007284;6.47e-29;4 | |ontology_enrichment_development_v019=UBERON:0004140;9.99e-30;1!UBERON:0010227;1.54e-29;1!UBERON:0005062;6.47e-29;4!UBERON:0007284;6.47e-29;4 | ||
|ontology_enrichment_disease=DOID:114!2.55e-09!2 | |ontology_enrichment_disease=DOID:114!2.55e-09!2 | ||
|ontology_enrichment_disease_v019=DOID:114;1.66e-15;2!DOID:1287;2.03e-08;4 | |ontology_enrichment_disease_v019=DOID:114;1.66e-15;2!DOID:1287;2.03e-08;4 | ||
|ontology_enrichment_disease_v019_2=DOID:114,1.78e-15,2;DOID:1287,2.11e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.20e-38!115;UBERON:0001049!4.25e-18!57;UBERON:0005068!4.25e-18!57;UBERON:0006241!4.25e-18!57;UBERON:0007135!4.25e-18!57;UBERON:0002616!2.42e-17!59;UBERON:0003075!6.45e-17!86;UBERON:0007284!6.45e-17!86;UBERON:0002780!4.38e-16!41;UBERON:0001890!4.38e-16!41;UBERON:0006240!4.38e-16!41;UBERON:0002346!6.30e-16!90;UBERON:0003080!1.25e-15!42;UBERON:0002791!2.71e-15!33;UBERON:0001893!8.95e-15!34;UBERON:0000955!5.89e-14!69;UBERON:0006238!5.89e-14!69;UBERON:0001869!2.05e-13!32;UBERON:0004151!4.83e-13!3;UBERON:0003978!5.89e-13!3;UBERON:0009751!5.89e-13!3;UBERON:0000946!5.89e-13!3;UBERON:0002523!5.89e-13!3;UBERON:0005983!5.89e-13!3;UBERON:0002165!5.89e-13!3;UBERON:0002062!5.89e-13!3;UBERON:0007280!5.89e-13!3;UBERON:0001017!1.32e-12!82;UBERON:0002020!1.67e-12!34;UBERON:0003528!1.67e-12!34;UBERON:0000349!2.24e-12!5;UBERON:0000025!4.14e-12!194;UBERON:0005743!8.05e-12!86;UBERON:0001896!8.34e-12!3;UBERON:0005290!8.34e-12!3;UBERON:0010096!8.34e-12!3;UBERON:0007100!1.26e-10!27;UBERON:0000073!2.69e-10!94;UBERON:0001016!2.69e-10!94;UBERON:0002420!3.78e-10!9;UBERON:0007245!3.78e-10!9;UBERON:0010009!3.78e-10!9;UBERON:0010011!3.78e-10!9;UBERON:0000454!3.78e-10!9;UBERON:0004111!5.30e-10!241;UBERON:0003056!8.17e-10!61;UBERON:0002081!2.26e-09!2;UBERON:0002133!3.95e-09!2;UBERON:0002619!5.96e-09!22;UBERON:0000369!9.98e-09!4;UBERON:0002435!9.98e-09!4;UBERON:0000204!9.98e-09!4;UBERON:0010082!9.98e-09!4;UBERON:0001954!1.09e-08!2;UBERON:0003022!1.09e-08!2;UBERON:0002421!1.09e-08!2;UBERON:0002600!1.09e-08!2;UBERON:0000477!1.19e-08!286;UBERON:0009663!1.35e-08!7;UBERON:0000033!6.52e-08!123;UBERON:0000956!8.97e-08!25;UBERON:0000203!8.97e-08!25;UBERON:0000153!2.42e-07!129;UBERON:0007811!2.42e-07!129;UBERON:0001872!5.21e-07!5;UBERON:0004121!9.76e-07!169 | |ontology_enrichment_uberon=UBERON:0007023!1.20e-38!115;UBERON:0001049!4.25e-18!57;UBERON:0005068!4.25e-18!57;UBERON:0006241!4.25e-18!57;UBERON:0007135!4.25e-18!57;UBERON:0002616!2.42e-17!59;UBERON:0003075!6.45e-17!86;UBERON:0007284!6.45e-17!86;UBERON:0002780!4.38e-16!41;UBERON:0001890!4.38e-16!41;UBERON:0006240!4.38e-16!41;UBERON:0002346!6.30e-16!90;UBERON:0003080!1.25e-15!42;UBERON:0002791!2.71e-15!33;UBERON:0001893!8.95e-15!34;UBERON:0000955!5.89e-14!69;UBERON:0006238!5.89e-14!69;UBERON:0001869!2.05e-13!32;UBERON:0004151!4.83e-13!3;UBERON:0003978!5.89e-13!3;UBERON:0009751!5.89e-13!3;UBERON:0000946!5.89e-13!3;UBERON:0002523!5.89e-13!3;UBERON:0005983!5.89e-13!3;UBERON:0002165!5.89e-13!3;UBERON:0002062!5.89e-13!3;UBERON:0007280!5.89e-13!3;UBERON:0001017!1.32e-12!82;UBERON:0002020!1.67e-12!34;UBERON:0003528!1.67e-12!34;UBERON:0000349!2.24e-12!5;UBERON:0000025!4.14e-12!194;UBERON:0005743!8.05e-12!86;UBERON:0001896!8.34e-12!3;UBERON:0005290!8.34e-12!3;UBERON:0010096!8.34e-12!3;UBERON:0007100!1.26e-10!27;UBERON:0000073!2.69e-10!94;UBERON:0001016!2.69e-10!94;UBERON:0002420!3.78e-10!9;UBERON:0007245!3.78e-10!9;UBERON:0010009!3.78e-10!9;UBERON:0010011!3.78e-10!9;UBERON:0000454!3.78e-10!9;UBERON:0004111!5.30e-10!241;UBERON:0003056!8.17e-10!61;UBERON:0002081!2.26e-09!2;UBERON:0002133!3.95e-09!2;UBERON:0002619!5.96e-09!22;UBERON:0000369!9.98e-09!4;UBERON:0002435!9.98e-09!4;UBERON:0000204!9.98e-09!4;UBERON:0010082!9.98e-09!4;UBERON:0001954!1.09e-08!2;UBERON:0003022!1.09e-08!2;UBERON:0002421!1.09e-08!2;UBERON:0002600!1.09e-08!2;UBERON:0000477!1.19e-08!286;UBERON:0009663!1.35e-08!7;UBERON:0000033!6.52e-08!123;UBERON:0000956!8.97e-08!25;UBERON:0000203!8.97e-08!25;UBERON:0000153!2.42e-07!129;UBERON:0007811!2.42e-07!129;UBERON:0001872!5.21e-07!5;UBERON:0004121!9.76e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0002081;7.34e-57;2!UBERON:0004151;2.40e-38;3!UBERON:0003978;3.86e-38;3!UBERON:0000946;3.86e-38;3!UBERON:0002079;1.54e-29;1!UBERON:0002146;3.16e-29;1!UBERON:0002134;3.16e-29;1!UBERON:0005208;3.16e-29;1!UBERON:0005623;3.16e-29;1!UBERON:0004145;3.16e-29;1!UBERON:0005946;3.16e-29;1!UBERON:0005965;3.16e-29;1!UBERON:0002078;3.16e-29;1!UBERON:0007100;1.70e-28;25!UBERON:0000948;5.25e-21;22!UBERON:0002133;2.37e-15;2!UBERON:0010313;3.15e-12;10!UBERON:0002114;1.09e-10;2!UBERON:0003103;7.15e-10;61!UBERON:0001009;5.83e-07;112!UBERON:0002108;6.39e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0002081;7.34e-57;2!UBERON:0004151;2.40e-38;3!UBERON:0003978;3.86e-38;3!UBERON:0000946;3.86e-38;3!UBERON:0002079;1.54e-29;1!UBERON:0002146;3.16e-29;1!UBERON:0002134;3.16e-29;1!UBERON:0005208;3.16e-29;1!UBERON:0005623;3.16e-29;1!UBERON:0004145;3.16e-29;1!UBERON:0005946;3.16e-29;1!UBERON:0005965;3.16e-29;1!UBERON:0002078;3.16e-29;1!UBERON:0007100;1.70e-28;25!UBERON:0000948;5.25e-21;22!UBERON:0002133;2.37e-15;2!UBERON:0010313;3.15e-12;10!UBERON:0002114;1.09e-10;2!UBERON:0003103;7.15e-10;61!UBERON:0001009;5.83e-07;112!UBERON:0002108;6.39e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002081,6.36e-57,2;UBERON:0010227,6.36e-57,2;UBERON:0004151,2.18e-38,3;UBERON:0003978,3.19e-38,3;UBERON:0009751,3.19e-38,3;UBERON:0000946,3.19e-38,3;UBERON:0002523,3.19e-38,3;UBERON:0005983,3.19e-38,3;UBERON:0002165,3.19e-38,3;UBERON:0002062,3.19e-38,3;UBERON:0007280,3.19e-38,3;UBERON:0002079,1.33e-29,1;UBERON:0002146,2.37e-29,1;UBERON:0005623,2.37e-29,1;UBERON:0002134,3.16e-29,1;UBERON:0005208,3.16e-29,1;UBERON:0005946,3.16e-29,1;UBERON:0005965,3.16e-29,1;UBERON:0002078,3.16e-29,1;UBERON:0007100,1.89e-26,27;UBERON:0000948,2.44e-19,24;UBERON:0005498,2.44e-19,24;UBERON:0004140,2.44e-19,24;UBERON:0009881,2.44e-19,24;UBERON:0004141,2.44e-19,24;UBERON:0003084,2.44e-19,24;UBERON:0007005,2.44e-19,24;UBERON:0004139,2.44e-19,24;UBERON:0004291,2.44e-19,24;UBERON:0004797,4.73e-17,7;UBERON:0002133,2.37e-15,2;UBERON:0010313,2.98e-12,10;UBERON:0002342,2.98e-12,10;UBERON:0005062,2.98e-12,10;UBERON:0003103,9.52e-11,68;UBERON:0004145,1.09e-10,3;UBERON:0002114,1.20e-10,2;UBERON:0002108,6.77e-07,4 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.317873157960757,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0.884612114798832,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0.558564802544508,1.60412296808179,1.43574604915363,0.998395002494955,2.57535628881943,0.446342914883745,8.80103489576114,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,2.85878130549347,0.662091970365432,0,0,0,0,0,0.082092520749339,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.0752103283492573,0,11.7227101684964,0,0,0,0,0,0.413373593002368,0.0634158101939068,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0.691259661814092,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.317873157960757,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0.884612114798832,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0.558564802544508,1.60412296808179,1.43574604915363,0.998395002494955,2.57535628881943,0.446342914883745,8.80103489576114,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,2.85878130549347,0.662091970365432,0,0,0,0,0,0.082092520749339,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.0752103283492573,0,11.7227101684964,0,0,0,0,0,0.413373593002368,0.0634158101939068,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0.691259661814092,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr1:12520398..12520406,+ | |short_description=p@chr1:12520398..12520406,+ | ||
}} | }} |
Latest revision as of 20:28, 27 July 2015
Short description: | p@chr1:12520398..12520406, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:12520398..12520406, + |
Coexpression cluster: | C27_pancreas_temporal_duodenum_salivary_ductus_umbilical_lung |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
heart disease | 1.78e-15 | 2 |
cardiovascular system disease | 2.11e-08 | 4 |