FFCP PHASE1:Hg19::chr19:54545833..54545844,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:54545833..54545844,-
|short_description=p@chr19:54545833..54545844,-
|description=CAGE_peak_at_chr19:54545833..54545844,-
|association_with_transcript=NA
...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:54545833..54545844,- | |||
|coexpression_cluster_id=C165 | |||
|description=CAGE_peak_at_chr19:54545833..54545844,- | |||
|id=chr19:54545833..54545844,- | |||
|ontology_enrichment_celltype=CL:0000077!8.44e-16!19;CL:0002097!6.75e-11!2;CL:0002573!7.39e-08!2;CL:0000076!1.22e-07!62;CL:0000174!1.54e-07!3;CL:0000239!1.69e-07!3;CL:1000615!1.69e-07!3;CL:0002306!1.69e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000047;9.07e-18;2!CL:0000054;9.07e-18;2!CL:0000137;9.07e-18;2!CL:0000092;9.07e-18;2!CL:0000077;6.15e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000054,1.07e-17,2;CL:0000137,1.07e-17,2;CL:0000092,1.07e-17,2;CL:0000077,6.15e-08,19 | |||
|ontology_enrichment_development_v019=UBERON:0007123;6.55e-08;5 | |||
|ontology_enrichment_disease=DOID:3908!1.88e-09!5;DOID:14566!4.43e-09!239;DOID:1115!2.86e-08!20;DOID:0050687!3.17e-08!143;DOID:162!1.43e-07!235;DOID:4556!1.87e-07!3;DOID:6193!9.91e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:6193;1.84e-34;1!DOID:0060085;5.05e-34;1!DOID:3165;5.05e-34;1!DOID:0060121;5.05e-34;1!DOID:2438;5.05e-34;1!DOID:4418;5.05e-34;1!DOID:3112;5.05e-34;1!DOID:3350;5.48e-18;2!DOID:200;9.07e-18;2!DOID:4305;9.07e-18;2!DOID:0060072;1.44e-09;4!DOID:201;8.48e-07;6!DOID:0060100;8.48e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,1.84e-34,1;DOID:3112,3.61e-34,1;DOID:0060085,7.06e-34,1;DOID:3165,7.06e-34,1;DOID:0060121,7.06e-34,1;DOID:2438,7.06e-34,1;DOID:4418,7.06e-34,1;DOID:3350,5.48e-18,2;DOID:200,1.07e-17,2;DOID:4305,1.07e-17,2;DOID:0060072,1.57e-09,4;DOID:201,8.97e-07,6;DOID:0060100,8.97e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0002369!1.54e-07!3;UBERON:0001235!1.54e-07!3;UBERON:0006858!1.54e-07!3;UBERON:0006853!1.69e-07!3;UBERON:0007685!1.69e-07!3;UBERON:0004134!1.69e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000014;1.44e-09;4!UBERON:0002046;6.55e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000014,1.57e-09,4;UBERON:0002046,6.13e-08,5;UBERON:0004117,6.13e-08,5;UBERON:0007689,6.13e-08,5;UBERON:0007123,6.13e-08,5;UBERON:0003091,6.13e-08,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0.215627574859517,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632994193584081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0,0,0.0870592065804026,0,7.56738542875113,0,0,0,0,0,0,0.274083849293502,1.19228767021794,0,0,0,0,0,0,0.229073192331831,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0.428883182749851,0.782982875895635,0,0,0.244736704506468,0,0.308801447160972,0,1.76689145945881,1.15748422962549,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31017534008077,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0.116241425368125,0,0,0,0,0,0,0.828324005113957,0.426067023795788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.784923038064294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0.215627574859517,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632994193584081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0,0,0.0870592065804026,0,7.56738542875113,0,0,0,0,0,0,0.274083849293502,1.19228767021794,0,0,0,0,0,0,0.229073192331831,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0.428883182749851,0.782982875895635,0,0,0.244736704506468,0,0.308801447160972,0,1.76689145945881,1.15748422962549,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31017534008077,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0.116241425368125,0,0,0,0,0,0,0.828324005113957,0.426067023795788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.784923038064294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr19:54545833..54545844,- | |||
}} | }} |
Latest revision as of 17:07, 27 July 2015
Short description: | p@chr19:54545833..54545844, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:54545833..54545844, - |
Coexpression cluster: | C165_epithelioid_Adipocyte_mesothelioma_myxofibrosarcoma_lung_gastric_Mesothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone matrix secreting cell | 1.07e-17 | 2 |
osteocyte | 1.07e-17 | 2 |
osteoclast | 1.07e-17 | 2 |
mesothelial cell | 6.15e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
zone of skin | 1.57e-09 | 4 |
thyroid gland | 6.13e-08 | 5 |
pharyngeal pouch | 6.13e-08 | 5 |
thyroid diverticulum | 6.13e-08 | 5 |
pharyngeal pouch 2 | 6.13e-08 | 5 |
thyroid primordium | 6.13e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 1.84e-34 | 1 |
papillary adenocarcinoma | 3.61e-34 | 1 |
organ system benign neoplasm | 7.06e-34 | 1 |
skin benign neoplasm | 7.06e-34 | 1 |
integumentary system benign neoplasm | 7.06e-34 | 1 |
dermis tumor | 7.06e-34 | 1 |
cutaneous fibrous histiocytoma | 7.06e-34 | 1 |
mesenchymal cell neoplasm | 5.48e-18 | 2 |
giant cell tumor | 1.07e-17 | 2 |
bone giant cell tumor | 1.07e-17 | 2 |
benign neoplasm | 1.57e-09 | 4 |
connective tissue cancer | 8.97e-07 | 6 |
musculoskeletal system cancer | 8.97e-07 | 6 |