FFCP PHASE1:Hg19::chr19:54461858..54461872,+: Difference between revisions
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|id=chr19:54461858..54461872,+
|short_description=p@chr19:54461858..54461872,+
|description=CAGE_peak_at_chr19:54461858..54461872,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:54461858..54461872,+ | |||
|coexpression_cluster_id=C2502 | |||
|description=CAGE_peak_at_chr19:54461858..54461872,+ | |||
|id=chr19:54461858..54461872,+ | |||
|ontology_enrichment_celltype=CL:0000047!2.01e-14!8;CL:0000540!1.91e-13!6;CL:0000031!1.91e-13!6;CL:0000404!1.91e-13!6;CL:0002322!5.66e-10!5 | |||
|ontology_enrichment_celltype_v019=CL:0000047;1.57e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.89e-09,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!1.12e-07!10 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001950;6.28e-38;20!UBERON:0002619;1.29e-34;22!UBERON:0002771;1.38e-33;2!UBERON:0000956;1.33e-30;25!UBERON:0000203;1.33e-30;25!UBERON:0002021;2.86e-30;5!UBERON:0001869;1.04e-19;32!UBERON:0003528;1.80e-19;34!UBERON:0002020;1.80e-19;34!UBERON:0002791;8.84e-19;32!UBERON:0001893;3.56e-18;34!UBERON:0001872;2.94e-14;5!UBERON:0000200;6.70e-12;6!UBERON:0002780;6.97e-12;41!UBERON:0001890;6.97e-12;41!UBERON:0001871;2.46e-10;6!UBERON:0000073;3.24e-09;53!UBERON:0002616;3.24e-09;53!UBERON:0001016;2.42e-07;83!UBERON:0001017;2.46e-07;75!UBERON:0002114;9.11e-07;2 | |||
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| ||
|short_description=p@chr19:54461858..54461872,+ | |||
}} | }} |
Latest revision as of 17:06, 27 July 2015
Short description: | p@chr19:54461858..54461872, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:54461858..54461872, + |
Coexpression cluster: | C2502_parietal_small_medial_occipital_temporal_pineal_Neurons |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.89e-09 | 8 |
Ontology term | p-value | n |
---|---|---|
neocortex | 7.43e-38 | 20 |
regional part of cerebral cortex | 1.50e-34 | 22 |
middle temporal gyrus | 2.70e-33 | 2 |
cerebral cortex | 1.53e-30 | 25 |
pallium | 1.53e-30 | 25 |
occipital lobe | 3.86e-30 | 5 |
regional part of telencephalon | 5.11e-24 | 32 |
cerebral hemisphere | 5.11e-24 | 32 |
brain grey matter | 1.25e-22 | 34 |
gray matter | 1.25e-22 | 34 |
telencephalon | 1.25e-22 | 34 |
regional part of forebrain | 8.18e-19 | 41 |
forebrain | 8.18e-19 | 41 |
anterior neural tube | 8.18e-19 | 41 |
future forebrain | 8.18e-19 | 41 |
central nervous system | 2.10e-15 | 81 |
regional part of nervous system | 1.46e-14 | 53 |
regional part of brain | 1.46e-14 | 53 |
parietal lobe | 2.25e-14 | 5 |
nervous system | 7.84e-14 | 89 |
neural tube | 8.92e-14 | 56 |
neural rod | 8.92e-14 | 56 |
future spinal cord | 8.92e-14 | 56 |
neural keel | 8.92e-14 | 56 |
pre-chordal neural plate | 1.23e-12 | 61 |
gyrus | 8.35e-12 | 6 |
neurectoderm | 1.36e-11 | 86 |
brain | 3.80e-11 | 68 |
future brain | 3.80e-11 | 68 |
temporal lobe | 2.97e-10 | 6 |
neural plate | 2.46e-09 | 82 |
presumptive neural plate | 2.46e-09 | 82 |
ectoderm-derived structure | 1.11e-08 | 171 |
ectoderm | 1.11e-08 | 171 |
presumptive ectoderm | 1.11e-08 | 171 |
ecto-epithelium | 2.77e-07 | 104 |
duodenum | 8.62e-07 | 2 |