FFCP PHASE1:Hg19::chr19:49568067..49568118,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:49568067..49568118,- | |||
|description=CAGE_peak_at_chr19:49568067..49568118,- | |description=CAGE_peak_at_chr19:49568067..49568118,- | ||
|id=chr19:49568067..49568118,- | |id=chr19:49568067..49568118,- | ||
|ontology_enrichment_celltype=CL:0000066!1.19e-27!254;CL:0002076!1.90e-24!43;CL:0000223!1.02e-20!59;CL:0002368!1.47e-11!13;CL:0002251!5.38e-11!21;CL:0002159!2.90e-09!13;CL:0000076!4.19e-07!62;CL:0000622!8.70e-07!5 | |ontology_enrichment_celltype=CL:0000066!1.19e-27!254;CL:0002076!1.90e-24!43;CL:0000223!1.02e-20!59;CL:0002368!1.47e-11!13;CL:0002251!5.38e-11!21;CL:0002159!2.90e-09!13;CL:0000076!4.19e-07!62;CL:0000622!8.70e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.15e-28;42!CL:0002368;7.05e-17;13!CL:0002251;1.59e-12;20!CL:0002159;2.51e-12;14!CL:0000349;1.95e-10;19!CL:0000244;8.79e-10;4!CL:0000731;8.79e-10;4!CL:0002202;1.65e-08;9!CL:0002632;1.65e-08;9!CL:0002621;2.65e-08;3!CL:0002231;2.82e-08;3!CL:0002541;3.81e-08;3!CL:0002577;1.33e-07;3!CL:0000622;1.44e-07;5!CL:0002328;3.43e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.15e-34,42;CL:0000223,4.03e-27,58;CL:0000066,1.68e-23,253;CL:0002368,4.76e-17,13;CL:0002251,1.93e-12,20;CL:0002159,2.12e-12,14;CL:0000349,1.58e-10,19;CL:0000244,6.31e-10,4;CL:0000731,6.31e-10,4;CL:0002202,1.18e-08,9;CL:0002632,1.18e-08,9;CL:0002541,2.63e-08,3;CL:0002231,2.63e-08,3;CL:0002621,2.70e-08,3;CL:0000076,7.21e-08,63;CL:0002577,1.15e-07,3;CL:0000622,1.47e-07,5;CL:0002328,1.81e-07,3;CL:0000240,9.05e-07,6;CL:0000311,9.05e-07,6;CL:0000079,9.05e-07,6;CL:0000237,9.05e-07,6;CL:0000036,9.05e-07,6;CL:0000357,9.05e-07,6;CL:0000114,9.05e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000223;2.43e-14;58 | |||
|ontology_enrichment_disease=DOID:305!6.26e-14!106;DOID:1749!1.21e-13!14;DOID:0050687!4.04e-12!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.00e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.00e-12,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.14e-18!169;UBERON:0000925!4.14e-18!169;UBERON:0006595!4.14e-18!169;UBERON:0001004!1.56e-13!72;UBERON:0000077!6.43e-12!130;UBERON:0005631!6.53e-12!14;UBERON:0000158!6.53e-12!14;UBERON:0001007!8.86e-11!155;UBERON:0001555!8.86e-11!155;UBERON:0007026!8.86e-11!155;UBERON:0000161!1.52e-10!35;UBERON:0005911!1.84e-10!82;UBERON:0005153!5.29e-10!37;UBERON:0005157!6.22e-10!51;UBERON:0000065!1.29e-09!53;UBERON:0003124!2.14e-09!7;UBERON:0004921!2.78e-09!129;UBERON:0004185!2.78e-09!129;UBERON:0000166!1.10e-08!21;UBERON:0005178!1.94e-08!34;UBERON:0002224!1.94e-08!34;UBERON:0005181!4.78e-08!35;UBERON:0001041!9.64e-08!98;UBERON:0005910!1.33e-07!6;UBERON:0000365!5.69e-07!5;UBERON:0002530!8.09e-07!59;UBERON:0004175!8.84e-07!25 | |ontology_enrichment_uberon=UBERON:0004119!4.14e-18!169;UBERON:0000925!4.14e-18!169;UBERON:0006595!4.14e-18!169;UBERON:0001004!1.56e-13!72;UBERON:0000077!6.43e-12!130;UBERON:0005631!6.53e-12!14;UBERON:0000158!6.53e-12!14;UBERON:0001007!8.86e-11!155;UBERON:0001555!8.86e-11!155;UBERON:0007026!8.86e-11!155;UBERON:0000161!1.52e-10!35;UBERON:0005911!1.84e-10!82;UBERON:0005153!5.29e-10!37;UBERON:0005157!6.22e-10!51;UBERON:0000065!1.29e-09!53;UBERON:0003124!2.14e-09!7;UBERON:0004921!2.78e-09!129;UBERON:0004185!2.78e-09!129;UBERON:0000166!1.10e-08!21;UBERON:0005178!1.94e-08!34;UBERON:0002224!1.94e-08!34;UBERON:0005181!4.78e-08!35;UBERON:0001041!9.64e-08!98;UBERON:0005910!1.33e-07!6;UBERON:0000365!5.69e-07!5;UBERON:0002530!8.09e-07!59;UBERON:0004175!8.84e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;8.53e-11;10!UBERON:0000158;8.53e-11;10!UBERON:0005911;3.76e-09;36!UBERON:0000486;4.66e-09;12!UBERON:0004807;1.44e-08;22!UBERON:0001949;2.65e-08;3!UBERON:0003124;3.81e-08;3!UBERON:0000920;3.81e-08;3!UBERON:0000478;8.03e-08;24!UBERON:0000365;8.16e-08;5!UBERON:0004815;3.43e-07;3!UBERON:0002031;3.43e-07;3!UBERON:0000161;9.28e-07;19!UBERON:0000166;9.28e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.87e-15,160;UBERON:0000925,3.87e-15,160;UBERON:0006595,3.87e-15,160;UBERON:0005631,4.38e-15,14;UBERON:0000158,4.38e-15,14;UBERON:0003124,3.94e-12,7;UBERON:0005153,4.53e-12,37;UBERON:0005157,1.57e-11,47;UBERON:0001004,1.08e-10,74;UBERON:0005911,1.14e-08,82;UBERON:0000920,2.63e-08,3;UBERON:0001949,2.70e-08,3;UBERON:0000161,4.56e-08,36;UBERON:0000365,6.29e-08,5;UBERON:0000478,6.84e-08,24;UBERON:0004807,1.09e-07,28;UBERON:0001007,1.63e-07,145;UBERON:0001555,1.63e-07,145;UBERON:0007026,1.63e-07,145;UBERON:0003102,1.67e-07,99;UBERON:0004815,1.81e-07,3;UBERON:0002031,1.81e-07,3;UBERON:0004175,3.46e-07,25;UBERON:0005156,4.92e-07,59;UBERON:0000990,4.92e-07,59;UBERON:0005178,5.73e-07,34;UBERON:0002224,5.73e-07,34;UBERON:0003100,8.78e-07,41 | |||
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| ||
|short_description=p@chr19:49568067..49568118,- | |short_description=p@chr19:49568067..49568118,- | ||
}} | }} |
Latest revision as of 15:59, 27 July 2015
Short description: | p@chr19:49568067..49568118, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:49568067..49568118, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.15e-34 | 42 |
endodermal cell | 4.03e-27 | 58 |
epithelial cell | 1.68e-23 | 253 |
respiratory epithelial cell | 4.76e-17 | 13 |
epithelial cell of alimentary canal | 1.93e-12 | 20 |
general ecto-epithelial cell | 2.12e-12 | 14 |
extraembryonic cell | 1.58e-10 | 19 |
transitional epithelial cell | 6.31e-10 | 4 |
urothelial cell | 6.31e-10 | 4 |
epithelial cell of tracheobronchial tree | 1.18e-08 | 9 |
epithelial cell of lower respiratory tract | 1.18e-08 | 9 |
chorionic membrane mesenchymal stem cell | 2.63e-08 | 3 |
epithelial cell of prostate | 2.63e-08 | 3 |
gingival epithelial cell | 2.70e-08 | 3 |
squamous epithelial cell | 7.21e-08 | 63 |
placental epithelial cell | 1.15e-07 | 3 |
acinar cell | 1.47e-07 | 5 |
bronchial epithelial cell | 1.81e-07 | 3 |
stratified squamous epithelial cell | 9.05e-07 | 6 |
keratin accumulating cell | 9.05e-07 | 6 |
stratified epithelial cell | 9.05e-07 | 6 |
keratinizing barrier epithelial cell | 9.05e-07 | 6 |
epithelial fate stem cell | 9.05e-07 | 6 |
stratified epithelial stem cell | 9.05e-07 | 6 |
surface ectodermal cell | 9.05e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 3.87e-15 | 160 |
endoderm | 3.87e-15 | 160 |
presumptive endoderm | 3.87e-15 | 160 |
extraembryonic membrane | 4.38e-15 | 14 |
membranous layer | 4.38e-15 | 14 |
chorion | 3.94e-12 | 7 |
epithelial bud | 4.53e-12 | 37 |
epithelial fold | 1.57e-11 | 47 |
respiratory system | 1.08e-10 | 74 |
endo-epithelium | 1.14e-08 | 82 |
egg chorion | 2.63e-08 | 3 |
gingival epithelium | 2.70e-08 | 3 |
orifice | 4.56e-08 | 36 |
urothelium | 6.29e-08 | 5 |
extraembryonic structure | 6.84e-08 | 24 |
respiratory system epithelium | 1.09e-07 | 28 |
digestive system | 1.63e-07 | 145 |
digestive tract | 1.63e-07 | 145 |
primitive gut | 1.63e-07 | 145 |
surface structure | 1.67e-07 | 99 |
lower respiratory tract epithelium | 1.81e-07 | 3 |
epithelium of bronchus | 1.81e-07 | 3 |
internal genitalia | 3.46e-07 | 25 |
reproductive structure | 4.92e-07 | 59 |
reproductive system | 4.92e-07 | 59 |
thoracic cavity element | 5.73e-07 | 34 |
thoracic cavity | 5.73e-07 | 34 |
female organism | 8.78e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.00e-12 | 14 |