FFCP PHASE1:Hg19::chr19:18899247..18899272,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr19:18899247..18899272,- | |||
|coexpression_cluster_id=C240 | |||
|description=CAGE_peak_at_chr19:18899247..18899272,- | |||
|id=chr19:18899247..18899272,- | |||
|ontology_enrichment_celltype=CL:0000136!2.52e-21!15;CL:0000153!4.48e-18!9;CL:0000447!4.48e-18!9;CL:0002334!3.90e-17!12;CL:0000667!2.08e-14!6;CL:0000058!2.08e-14!6;CL:0000138!2.08e-14!6;CL:0000057!1.29e-12!75;CL:0002580!1.68e-11!3;CL:0000135!1.80e-11!3;CL:0000386!1.80e-11!3;CL:0000388!1.80e-11!3;CL:0002615!1.99e-11!3;CL:0000327!3.23e-11!14;CL:0002579!5.68e-11!3;CL:0000499!6.03e-11!27;CL:0002617!2.34e-08!2;CL:0000325!6.73e-07!39 | |||
|ontology_enrichment_celltype_v019=CL:0000153;2.25e-35;9!CL:0000447;2.25e-35;9!CL:0000136;2.07e-32;13!CL:0000138;1.12e-27;6!CL:0002334;1.30e-26;12!CL:0000499;2.80e-22;28!CL:0002580;2.02e-21;3!CL:0000135;2.31e-21;3!CL:0000388;2.31e-21;3!CL:0002615;2.65e-21;3!CL:0000327;6.26e-21;15!CL:0002579;2.64e-20;3!CL:0002617;4.26e-15;2!CL:0000214;8.58e-10;3!CL:0002521;1.10e-09;3!CL:0002616;3.70e-08;1!CL:0002581;5.99e-08;1!CL:0000151;7.96e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,2.50e-35,9;CL:0000447,2.50e-35,9;CL:0000136,4.84e-35,15;CL:0000058,1.25e-27,6;CL:0000138,1.25e-27,6;CL:0002334,1.23e-26,12;CL:0000499,2.97e-22,28;CL:0002580,2.09e-21,3;CL:0000135,2.40e-21,3;CL:0000388,2.40e-21,3;CL:0002615,2.94e-21,3;CL:0000327,6.65e-21,15;CL:0002579,2.39e-20,3;CL:0002617,3.97e-15,2;CL:0000134,5.64e-10,354;CL:0000214,8.58e-10,3;CL:0002320,1.11e-09,361;CL:0002521,1.17e-09,3;CL:0000057,9.97e-09,76;CL:0000219,1.18e-08,386;CL:0000151,3.10e-08,36;CL:0002616,3.58e-08,1;CL:0002581,5.79e-08,1;CL:0000048,2.16e-07,427;CL:0000723,3.23e-07,433;CL:0000034,5.42e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3369;1.06e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3369,1.06e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0003688!1.16e-20!6;UBERON:0002358!1.16e-20!6;UBERON:0003684!1.16e-20!6;UBERON:0001178!1.16e-20!6;UBERON:0004457!2.08e-17!12;UBERON:0000042!2.08e-17!12;UBERON:0000043!1.80e-11!3;UBERON:0001013!1.07e-10!14;UBERON:0000310!7.44e-09!10;UBERON:0005406!5.18e-08!2;UBERON:0001443!5.22e-08!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.38e-46;9!UBERON:0000042;2.38e-46;9!UBERON:0003688;8.58e-40;6!UBERON:0002358;8.58e-40;6!UBERON:0003684;8.58e-40;6!UBERON:0001178;8.58e-40;6!UBERON:0007846;2.31e-21;3!UBERON:0000043;2.31e-21;3!UBERON:0007845;2.31e-21;3!UBERON:0000310;2.70e-17;10!UBERON:0001443;1.05e-15;11!UBERON:0005406;2.06e-14;2!UBERON:0001013;1.36e-11;14!UBERON:0006915;8.58e-10;3!UBERON:0007616;8.58e-10;3!UBERON:0002217;8.58e-10;3!UBERON:0002018;8.58e-10;3!UBERON:0002190;1.10e-09;3!UBERON:0002135;1.06e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,8.58e-40,6;UBERON:0002358,8.58e-40,6;UBERON:0003684,8.58e-40,6;UBERON:0001178,8.58e-40,6;UBERON:0004457,1.64e-34,12;UBERON:0000042,1.64e-34,12;UBERON:0007846,2.40e-21,3;UBERON:0000043,2.40e-21,3;UBERON:0007845,2.40e-21,3;UBERON:0000310,2.66e-17,10;UBERON:0001443,1.03e-15,11;UBERON:0005406,1.93e-14,2;UBERON:0001013,1.35e-11,14;UBERON:0002384,2.89e-10,371;UBERON:0006915,8.58e-10,3;UBERON:0007616,8.58e-10,3;UBERON:0002217,8.58e-10,3;UBERON:0002018,8.58e-10,3;UBERON:0002190,1.17e-09,3;UBERON:0002135,9.29e-08,1;UBERON:0004458,1.29e-07,49;UBERON:0004923,9.25e-07,66 | |||
|phase1_expression=13.2625216867506,34.2560838225573,6.3429481843187,34.0249214400643,12.0679495495368,10.4680622892044,7.59899634504932,0,1.04474251279935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2529523714611,2.00535164254356,11.0083354410226,5.5670016293577,13.1391414981712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,0.179389635688862,0,0,0.600182192168805,0,1.28820270022815,0.37223371266318,0.675105328965065,0.779496041289589,0,0,0,0,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,22.7407504055985,0,0,0,0,0,0,0,0,0,0,0,0,7.19512642674453,14.2719635157898,30.0306301043389,2.69092213436972,6.65219423786715,4.18220194973379,5.93672265779964,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.07762831779956,2.63435914367922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.95497680890578,0.687481272035051,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71697852591396,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0.245148321753905,0,0,0,0,0.849635573439084,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,10.415860508669,22.6466058029395,12.5461703015899,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0.426467963801962,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr19:18899247..18899272,- | |||
}} |
Latest revision as of 05:21, 26 July 2015
Short description: | p@chr19:18899247..18899272, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:18899247..18899272, - |
Coexpression cluster: | C240_Adipocyte_Preadipocyte_Osteoblast_Chondrocyte_tenocyte_Synoviocyte_mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 2.50e-35 | 9 |
carbohydrate secreting cell | 2.50e-35 | 9 |
fat cell | 4.84e-35 | 15 |
chondroblast | 1.25e-27 | 6 |
chondrocyte | 1.25e-27 | 6 |
preadipocyte | 1.23e-26 | 12 |
stromal cell | 2.97e-22 | 28 |
preadipocyte of the breast | 2.09e-21 | 3 |
fibrocyte | 2.40e-21 | 3 |
tendon cell | 2.40e-21 | 3 |
adipocyte of omentum tissue | 2.94e-21 | 3 |
extracellular matrix secreting cell | 6.65e-21 | 15 |
omentum preadipocyte | 2.39e-20 | 3 |
adipocyte of breast | 3.97e-15 | 2 |
mesenchymal cell | 5.64e-10 | 354 |
synovial cell | 8.58e-10 | 3 |
connective tissue cell | 1.11e-09 | 361 |
subcutaneous fat cell | 1.17e-09 | 3 |
fibroblast | 9.97e-09 | 76 |
motile cell | 1.18e-08 | 386 |
secretory cell | 3.10e-08 | 36 |
perirenal adipocyte cell | 3.58e-08 | 1 |
perirenal preadipocyte | 5.79e-08 | 1 |
multi fate stem cell | 2.16e-07 | 427 |
somatic stem cell | 3.23e-07 | 433 |
stem cell | 5.42e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
omentum | 8.58e-40 | 6 |
peritoneum | 8.58e-40 | 6 |
abdominal cavity | 8.58e-40 | 6 |
visceral peritoneum | 8.58e-40 | 6 |
cavity lining | 1.64e-34 | 12 |
serous membrane | 1.64e-34 | 12 |
dense regular connective tissue | 2.40e-21 | 3 |
tendon | 2.40e-21 | 3 |
regular connective tissue | 2.40e-21 | 3 |
breast | 2.66e-17 | 10 |
chest | 1.03e-15 | 11 |
perirenal fat | 1.93e-14 | 2 |
adipose tissue | 1.35e-11 | 14 |
connective tissue | 2.89e-10 | 371 |
stratified squamous epithelium | 8.58e-10 | 3 |
layer of synovial tissue | 8.58e-10 | 3 |
synovial joint | 8.58e-10 | 3 |
synovial membrane of synovial joint | 8.58e-10 | 3 |
subcutaneous adipose tissue | 1.17e-09 | 3 |
mitral valve | 9.29e-08 | 1 |
body cavity or lining | 1.29e-07 | 49 |
organ component layer | 9.25e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
peripheral primitive neuroectodermal tumor | 1.06e-07 | 1 |