FFCP PHASE1:Hg19::chr19:18710507..18710537,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:18710507..18710537,-
|short_description=p@chr19:18710507..18710537,-
|description=CAGE_peak_at_chr19:18710507..18710537,-
|association_with_transcript=NA
...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:18710507..18710537,- | |||
|coexpression_cluster_id=C1449 | |||
|description=CAGE_peak_at_chr19:18710507..18710537,- | |||
|id=chr19:18710507..18710537,- | |||
|ontology_enrichment_celltype=CL:0000136!6.12e-14!15;CL:0000153!6.21e-13!9;CL:0000447!6.21e-13!9;CL:0002334!6.28e-11!12;CL:0000499!1.55e-08!27;CL:0000667!4.27e-08!6;CL:0000058!4.27e-08!6;CL:0000138!4.27e-08!6;CL:0000327!1.24e-07!14;CL:0002615!6.08e-07!3;CL:0002521!6.93e-07!3;CL:0002579!9.64e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000136;4.42e-37;13!CL:0000153;3.12e-31;9!CL:0000447;3.12e-31;9!CL:0000138;4.21e-24;6!CL:0002615;2.25e-19;3!CL:0002521;4.02e-19;3!CL:0002579;1.09e-18;3!CL:0000327;2.03e-18;15!CL:0002334;1.84e-17;12!CL:0000499;1.98e-15;28!CL:0002617;1.71e-13;2!CL:0002580;3.77e-09;3!CL:0000214;4.25e-09;3!CL:0000135;1.53e-08;3!CL:0000388;1.53e-08;3!CL:0002616;1.74e-07;1!CL:0000222;6.20e-07;1!CL:0002581;6.20e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,5.91e-32,15;CL:0000153,2.91e-31,9;CL:0000447,2.91e-31,9;CL:0000058,3.92e-24,6;CL:0000138,3.92e-24,6;CL:0002615,2.40e-19,3;CL:0002521,3.67e-19,3;CL:0002579,1.09e-18,3;CL:0000327,1.95e-18,15;CL:0002334,1.69e-17,12;CL:0000499,1.98e-15,28;CL:0002617,1.66e-13,2;CL:0000134,1.81e-09,354;CL:0002320,3.59e-09,361;CL:0002580,3.77e-09,3;CL:0000214,4.25e-09,3;CL:0000135,1.62e-08,3;CL:0000388,1.62e-08,3;CL:0000219,4.00e-08,386;CL:0000048,1.32e-07,427;CL:0002616,1.74e-07,1;CL:0000723,2.04e-07,433;CL:0000057,2.89e-07,76;CL:0000151,3.51e-07,36;CL:0000034,3.59e-07,441;CL:0002581,5.19e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0010226;4.21e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004457!2.02e-14!12;UBERON:0000042!2.02e-14!12;UBERON:0003688!4.85e-12!6;UBERON:0002358!4.85e-12!6;UBERON:0003684!4.85e-12!6;UBERON:0001178!4.85e-12!6;UBERON:0001013!1.82e-09!14;UBERON:0007023!9.99e-09!115;UBERON:0004923!1.12e-08!57;UBERON:0002190!6.93e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.74e-42;9!UBERON:0000042;2.74e-42;9!UBERON:0003688;2.93e-36;6!UBERON:0002358;2.93e-36;6!UBERON:0003684;2.93e-36;6!UBERON:0001178;2.93e-36;6!UBERON:0002190;4.02e-19;3!UBERON:0001013;4.32e-15;14!UBERON:0005406;9.60e-13;2!UBERON:0002072;1.10e-11;5!UBERON:0000310;4.35e-10;10!UBERON:0001443;3.54e-09;11!UBERON:0006915;4.25e-09;3!UBERON:0007616;4.25e-09;3!UBERON:0002217;4.25e-09;3!UBERON:0002018;4.25e-09;3!UBERON:0007846;1.53e-08;3!UBERON:0000043;1.53e-08;3!UBERON:0007845;1.53e-08;3!UBERON:0002084;4.21e-07;1!UBERON:0002082;4.21e-07;1!UBERON:0001301;6.20e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,3.12e-36,6;UBERON:0002358,3.12e-36,6;UBERON:0003684,3.12e-36,6;UBERON:0001178,3.12e-36,6;UBERON:0004457,2.04e-31,12;UBERON:0000042,2.04e-31,12;UBERON:0002190,3.67e-19,3;UBERON:0001013,3.86e-15,14;UBERON:0005406,8.03e-13,2;UBERON:0002072,1.05e-11,5;UBERON:0000310,4.30e-10,10;UBERON:0001443,3.50e-09,11;UBERON:0006915,4.25e-09,3;UBERON:0007616,4.25e-09,3;UBERON:0002217,4.25e-09,3;UBERON:0002018,4.25e-09,3;UBERON:0002384,9.12e-09,371;UBERON:0007846,1.62e-08,3;UBERON:0000043,1.62e-08,3;UBERON:0007845,1.62e-08,3;UBERON:0004923,2.38e-07,66;UBERON:0002084,4.34e-07,1;UBERON:0002082,4.34e-07,1;UBERON:0010226,4.34e-07,1;UBERON:0001301,7.40e-07,1;UBERON:0004458,8.65e-07,49 | |||
|phase1_expression=35.7906407162997,11.1332272423311,27.3451543946184,11.0080628188443,24.5828601935008,12.2127393374052,27.8629865985142,13.2661173419635,7.57438321779532,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89151321907653,2.00535164254356,6.51809335323707,3.1811437882044,2.91980922181582,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0,2.86836620748814,1.41867352879343,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45071417671979,0,0,0,0,0,0.103052529238439,0.257640540045629,1.30281799432113,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0.121973706129595,0.132529768321485,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.3062578340753,0,0,0,0,0,0,0.142977993658148,0.542621605391443,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.902838299183157,9.09630016223939,7.24311499047534,0,0,0.0868836144680828,0,0,0,0,0,0,0,0.30239029332968,18.3599777785895,0.306923946576125,8.70046292742528,19.3490115376108,5.11707249066703,4.3430558708774,1.48418066444991,0,0.177561725313127,0.164254312027618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,1.39453664789186,0,0.6970372701606,0,0,0.869932992075073,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0.66343897524122,0,0,0,0,0.30982349809975,0,0,0,0,0,16.4663955532178,7.24448764511784,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0.724999575434793,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0.438770794307945,0.10893846351899,0,0.153900517007594,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0.067401132980677,0,0,0,0,0.242780379534093,0.394584402849391,0,0,0.063186579628488,0.150323419414493,0,0,0,0,0,0,0.416024019039416,0,0,0,1.04836000945218,0,0,0,0,0.0969890164884194,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0.229160424011684,0.717873024576814,0,0,0,0,0,0,0.630265458457789,0.247247575143499,0.202210631562555,0,0,0,0,0,0.137539436597234,0,0,0,0.121499113316049,0,0,0,0,0.896436696664224,0,0,2.64836788146173,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250381861413,0.573409195690071,0.110929051536852,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686791410365586,0.336749488765919,1.26184898228651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0.159633859057151,0.41023272848151,0,0,0.322951291263702,0,0.0981477185010256,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0.135075169236789,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.354809480650555,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51215543128185,0,0,0,0,0,0,0,0,0,0,0,0,0.615976841137482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509781344063451,0.0939839179798536,0,0,0,0,0,0,0,0,0.788857810965923,0.0679914901909147,0,0,0.743990036333503,1.38652688589425,2.59575937274273,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0,0,0,0,0,0.763765899337979,0,0,0,0.0673520530145875,0.143444410785353,0,0.0814032686109745,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=35.7906407162997,11.1332272423311,27.3451543946184,11.0080628188443,24.5828601935008,12.2127393374052,27.8629865985142,13.2661173419635,7.57438321779532,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89151321907653,2.00535164254356,6.51809335323707,3.1811437882044,2.91980922181582,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0,2.86836620748814,1.41867352879343,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45071417671979,0,0,0,0,0,0.103052529238439,0.257640540045629,1.30281799432113,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0.121973706129595,0.132529768321485,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.3062578340753,0,0,0,0,0,0,0.142977993658148,0.542621605391443,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.902838299183157,9.09630016223939,7.24311499047534,0,0,0.0868836144680828,0,0,0,0,0,0,0,0.30239029332968,18.3599777785895,0.306923946576125,8.70046292742528,19.3490115376108,5.11707249066703,4.3430558708774,1.48418066444991,0,0.177561725313127,0.164254312027618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,1.39453664789186,0,0.6970372701606,0,0,0.869932992075073,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0.66343897524122,0,0,0,0,0.30982349809975,0,0,0,0,0,16.4663955532178,7.24448764511784,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0.724999575434793,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0.438770794307945,0.10893846351899,0,0.153900517007594,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0.067401132980677,0,0,0,0,0.242780379534093,0.394584402849391,0,0,0.063186579628488,0.150323419414493,0,0,0,0,0,0,0.416024019039416,0,0,0,1.04836000945218,0,0,0,0,0.0969890164884194,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0.229160424011684,0.717873024576814,0,0,0,0,0,0,0.630265458457789,0.247247575143499,0.202210631562555,0,0,0,0,0,0.137539436597234,0,0,0,0.121499113316049,0,0,0,0,0.896436696664224,0,0,2.64836788146173,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250381861413,0.573409195690071,0.110929051536852,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686791410365586,0.336749488765919,1.26184898228651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0.159633859057151,0.41023272848151,0,0,0.322951291263702,0,0.0981477185010256,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0.135075169236789,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.354809480650555,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51215543128185,0,0,0,0,0,0,0,0,0,0,0,0,0.615976841137482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509781344063451,0.0939839179798536,0,0,0,0,0,0,0,0,0.788857810965923,0.0679914901909147,0,0,0.743990036333503,1.38652688589425,2.59575937274273,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0,0,0,0,0,0.763765899337979,0,0,0,0.0673520530145875,0.143444410785353,0,0.0814032686109745,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr19:18710507..18710537,- | |||
}} | }} |
Latest revision as of 05:16, 26 July 2015
Short description: | p@chr19:18710507..18710537, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:18710507..18710537, - |
Coexpression cluster: | C1449_Mesenchymal_Adipocyte_Synoviocyte_Chondrocyte_Preadipocyte_tenocyte_spindle |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 5.91e-32 | 15 |
GAG secreting cell | 2.91e-31 | 9 |
carbohydrate secreting cell | 2.91e-31 | 9 |
chondroblast | 3.92e-24 | 6 |
chondrocyte | 3.92e-24 | 6 |
adipocyte of omentum tissue | 2.40e-19 | 3 |
subcutaneous fat cell | 3.67e-19 | 3 |
omentum preadipocyte | 1.09e-18 | 3 |
extracellular matrix secreting cell | 1.95e-18 | 15 |
preadipocyte | 1.69e-17 | 12 |
stromal cell | 1.98e-15 | 28 |
adipocyte of breast | 1.66e-13 | 2 |
mesenchymal cell | 1.81e-09 | 354 |
connective tissue cell | 3.59e-09 | 361 |
preadipocyte of the breast | 3.77e-09 | 3 |
synovial cell | 4.25e-09 | 3 |
fibrocyte | 1.62e-08 | 3 |
tendon cell | 1.62e-08 | 3 |
motile cell | 4.00e-08 | 386 |
multi fate stem cell | 1.32e-07 | 427 |
perirenal adipocyte cell | 1.74e-07 | 1 |
somatic stem cell | 2.04e-07 | 433 |
fibroblast | 2.89e-07 | 76 |
secretory cell | 3.51e-07 | 36 |
stem cell | 3.59e-07 | 441 |
perirenal preadipocyte | 5.19e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
omentum | 3.12e-36 | 6 |
peritoneum | 3.12e-36 | 6 |
abdominal cavity | 3.12e-36 | 6 |
visceral peritoneum | 3.12e-36 | 6 |
cavity lining | 2.04e-31 | 12 |
serous membrane | 2.04e-31 | 12 |
subcutaneous adipose tissue | 3.67e-19 | 3 |
adipose tissue | 3.86e-15 | 14 |
perirenal fat | 8.03e-13 | 2 |
hypodermis | 1.05e-11 | 5 |
breast | 4.30e-10 | 10 |
chest | 3.50e-09 | 11 |
stratified squamous epithelium | 4.25e-09 | 3 |
layer of synovial tissue | 4.25e-09 | 3 |
synovial joint | 4.25e-09 | 3 |
synovial membrane of synovial joint | 4.25e-09 | 3 |
connective tissue | 9.12e-09 | 371 |
dense regular connective tissue | 1.62e-08 | 3 |
tendon | 1.62e-08 | 3 |
regular connective tissue | 1.62e-08 | 3 |
organ component layer | 2.38e-07 | 66 |
heart left ventricle | 4.34e-07 | 1 |
cardiac ventricle | 4.34e-07 | 1 |
future cardiac ventricle | 4.34e-07 | 1 |
epididymis | 7.40e-07 | 1 |
body cavity or lining | 8.65e-07 | 49 |