FFCP PHASE1:Hg19::chr19:17994651..17994662,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:17994651..17994662,+ | |||
|coexpression_cluster_id=C2482 | |coexpression_cluster_id=C2482 | ||
|description=CAGE_peak_at_chr19:17994651..17994662,+ | |description=CAGE_peak_at_chr19:17994651..17994662,+ | ||
|id=chr19:17994651..17994662,+ | |id=chr19:17994651..17994662,+ | ||
|ontology_enrichment_celltype=CL:0000039!2.66e-73!7;CL:0000586!2.66e-73!7;CL:0002322!3.59e-09!5;CL:1000415!9.44e-07!2 | |ontology_enrichment_celltype=CL:0000039!2.66e-73!7;CL:0000586!2.66e-73!7;CL:0002322!3.59e-09!5;CL:1000415!9.44e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000039;1.22e-56;7!CL:0000586;1.22e-56;7!CL:1000415;6.85e-14;2!CL:0000083;1.69e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.22e-56,7;CL:0000586,1.22e-56,7;CL:1000415,7.30e-14,2;CL:0000083,1.59e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0009117;7.19e-23;10!UBERON:0005564;7.19e-23;10 | |||
|ontology_enrichment_disease=DOID:3095!5.44e-23!22;DOID:2994!5.44e-23!22;DOID:1799!3.65e-12!1;DOID:10165!3.65e-12!1;DOID:1798!3.65e-12!1;DOID:0050687!6.12e-09!143;DOID:305!5.53e-07!106 | |ontology_enrichment_disease=DOID:3095!5.44e-23!22;DOID:2994!5.44e-23!22;DOID:1799!3.65e-12!1;DOID:10165!3.65e-12!1;DOID:1798!3.65e-12!1;DOID:0050687!6.12e-09!143;DOID:305!5.53e-07!106 | ||
|ontology_enrichment_disease_v019=DOID:1799;5.93e-26;1!DOID:10165;5.93e-26;1!DOID:1798;5.93e-26;1!DOID:3095;1.82e-18;22!DOID:2994;1.82e-18;22!DOID:4468;1.46e-13;2!DOID:305;2.69e-08;106!DOID:1793;1.69e-07;4!DOID:5409;1.69e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,4.61e-26,1;DOID:10165,4.61e-26,1;DOID:1798,4.61e-26,1;DOID:3095,1.82e-18,22;DOID:2994,1.82e-18,22;DOID:4468,1.37e-13,2;DOID:305,1.89e-11,106;DOID:0050687,4.45e-11,143;DOID:1793,1.59e-07,4;DOID:5409,1.80e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000473!5.15e-47!8;UBERON:0003135!3.84e-34!11;UBERON:0000991!9.43e-18!21;UBERON:0009196!9.43e-18!21;UBERON:0009117!9.43e-18!21;UBERON:0005564!9.43e-18!21;UBERON:0004176!6.26e-17!22;UBERON:0003101!6.26e-17!22;UBERON:0000079!6.26e-17!22;UBERON:0002323!7.10e-14!46;UBERON:0004458!5.71e-13!49;UBERON:0003886!7.02e-10!63;UBERON:0002553!8.50e-09!70;UBERON:0003133!1.52e-07!48;UBERON:0000464!4.11e-07!104 | |ontology_enrichment_uberon=UBERON:0000473!5.15e-47!8;UBERON:0003135!3.84e-34!11;UBERON:0000991!9.43e-18!21;UBERON:0009196!9.43e-18!21;UBERON:0009117!9.43e-18!21;UBERON:0005564!9.43e-18!21;UBERON:0004176!6.26e-17!22;UBERON:0003101!6.26e-17!22;UBERON:0000079!6.26e-17!22;UBERON:0002323!7.10e-14!46;UBERON:0004458!5.71e-13!49;UBERON:0003886!7.02e-10!63;UBERON:0002553!8.50e-09!70;UBERON:0003133!1.52e-07!48;UBERON:0000464!4.11e-07!104 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.27e-28;8!UBERON:0003135;7.24e-21;11!UBERON:0002323;6.01e-12;45!UBERON:0000991;2.75e-11;21!UBERON:0003101;8.34e-11;22!UBERON:0000079;8.34e-11;22!UBERON:0002110;1.05e-09;3!UBERON:0004458;6.10e-09;48!UBERON:0002553;5.53e-08;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.38e-28,8;UBERON:0003135,7.49e-21,11;UBERON:0002323,1.00e-13,46;UBERON:0004458,6.66e-13,49;UBERON:0003886,9.86e-12,54;UBERON:0000991,2.80e-11,21;UBERON:0009196,2.80e-11,21;UBERON:0009117,2.80e-11,21;UBERON:0005564,2.80e-11,21;UBERON:0004176,8.48e-11,22;UBERON:0003101,8.48e-11,22;UBERON:0000079,8.48e-11,22;UBERON:0002553,2.06e-10,61;UBERON:0002110,1.10e-09,3;UBERON:0006242,1.10e-09,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.46112780877612,4.39812457607883,0.217294743844016,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0,1.30586246527318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.10657903743086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61906694481422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.08886981816315,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87557553019531,0.534434810531121,2.38926738790597,1.0028301571695,0.227336094654718,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.46112780877612,4.39812457607883,0.217294743844016,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0,1.30586246527318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.10657903743086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61906694481422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.08886981816315,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87557553019531,0.534434810531121,2.38926738790597,1.0028301571695,0.227336094654718,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr19:17994651..17994662,+ | |short_description=p@chr19:17994651..17994662,+ | ||
}} | }} |
Latest revision as of 04:58, 26 July 2015
Short description: | p@chr19:17994651..17994662, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:17994651..17994662, + |
Coexpression cluster: | C2482_choriocarcinoma_testicular_gall_small_clear_pancreatic_H9 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.22e-56 | 7 |
germ cell | 1.22e-56 | 7 |
epithelial cell of gall bladder | 7.30e-14 | 2 |
epithelial cell of pancreas | 1.59e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
testis | 2.38e-28 | 8 |
male reproductive organ | 7.49e-21 | 11 |
body cavity | 1.00e-13 | 46 |
body cavity or lining | 6.66e-13 | 49 |
body cavity precursor | 9.86e-12 | 54 |
gonad | 2.80e-11 | 21 |
indifferent external genitalia | 2.80e-11 | 21 |
indifferent gonad | 2.80e-11 | 21 |
gonad primordium | 2.80e-11 | 21 |
external genitalia | 8.48e-11 | 22 |
male organism | 8.48e-11 | 22 |
male reproductive system | 8.48e-11 | 22 |
anatomical cavity | 2.06e-10 | 61 |
gallbladder | 1.10e-09 | 3 |
gall bladder primordium | 1.10e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 4.61e-26 | 1 |
endocrine pancreas cancer | 4.61e-26 | 1 |
pancreatic endocrine carcinoma | 4.61e-26 | 1 |
germ cell and embryonal cancer | 1.82e-18 | 22 |
germ cell cancer | 1.82e-18 | 22 |
clear cell adenocarcinoma | 1.37e-13 | 2 |
carcinoma | 1.89e-11 | 106 |
cell type cancer | 4.45e-11 | 143 |
pancreatic cancer | 1.59e-07 | 4 |
lung small cell carcinoma | 1.80e-07 | 4 |