FFCP PHASE1:Hg19::chr19:17422953..17423002,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:17422953..17423002,+ | |||
|coexpression_cluster_id=C3692 | |coexpression_cluster_id=C3692 | ||
|description=CAGE_peak_at_chr19:17422953..17423002,+ | |description=CAGE_peak_at_chr19:17422953..17423002,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000066!6.34e-28!254;CL:0000223!1.33e-08!59 | |ontology_enrichment_celltype=CL:0000066!6.34e-28!254;CL:0000223!1.33e-08!59 | ||
|ontology_enrichment_celltype_v019=CL:0002541;6.94e-12;3!CL:0000039;1.20e-11;7!CL:0000586;1.20e-11;7!CL:1000415;2.36e-07;2 | |ontology_enrichment_celltype_v019=CL:0002541;6.94e-12;3!CL:0000039;1.20e-11;7!CL:0000586;1.20e-11;7!CL:1000415;2.36e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.52e-13,253;CL:0002541,6.84e-12,3;CL:0000039,8.88e-12,7;CL:0000586,8.88e-12,7;CL:1000415,2.07e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0008947;3.91e-13;29 | |ontology_enrichment_development_v019=UBERON:0008947;3.91e-13;29 | ||
|ontology_enrichment_disease=DOID:305!2.51e-25!106;DOID:0050687!4.24e-20!143;DOID:162!1.77e-12!235;DOID:14566!9.96e-12!239 | |ontology_enrichment_disease=DOID:305!2.51e-25!106;DOID:0050687!4.24e-20!143;DOID:162!1.77e-12!235;DOID:14566!9.96e-12!239 | ||
|ontology_enrichment_disease_v019=DOID:4468;2.36e-07;2 | |ontology_enrichment_disease_v019=DOID:4468;2.36e-07;2 | ||
|ontology_enrichment_disease_v019_2=DOID:305,7.59e-20,106;DOID:0050687,9.02e-18,143;DOID:162,1.83e-13,235;DOID:14566,5.48e-13,239;DOID:4468,3.40e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.35e-18!169;UBERON:0000925!2.35e-18!169;UBERON:0006595!2.35e-18!169;UBERON:0000077!1.25e-16!130;UBERON:0001007!3.56e-16!155;UBERON:0001555!3.56e-16!155;UBERON:0007026!3.56e-16!155;UBERON:0004921!1.20e-14!129;UBERON:0004185!1.20e-14!129;UBERON:0001737!1.30e-12!9;UBERON:0001041!3.13e-12!98;UBERON:0005911!1.31e-10!82;UBERON:0000466!5.66e-09!126;UBERON:0001048!9.84e-09!168;UBERON:0000062!1.15e-08!511;UBERON:0003104!1.22e-08!238;UBERON:0009142!1.22e-08!238;UBERON:0005631!1.34e-08!14;UBERON:0000158!1.34e-08!14;UBERON:0000064!1.62e-08!219;UBERON:0005177!8.92e-08!107;UBERON:0003929!9.40e-08!54;UBERON:0000072!1.22e-07!46;UBERON:0000464!1.72e-07!104;UBERON:0001557!2.16e-07!19;UBERON:0006554!2.78e-07!44;UBERON:0001004!2.79e-07!72;UBERON:0008947!3.39e-07!38;UBERON:0003258!3.39e-07!38;UBERON:0002075!4.07e-07!18;UBERON:0000481!4.69e-07!347;UBERON:0001008!5.55e-07!45 | |ontology_enrichment_uberon=UBERON:0004119!2.35e-18!169;UBERON:0000925!2.35e-18!169;UBERON:0006595!2.35e-18!169;UBERON:0000077!1.25e-16!130;UBERON:0001007!3.56e-16!155;UBERON:0001555!3.56e-16!155;UBERON:0007026!3.56e-16!155;UBERON:0004921!1.20e-14!129;UBERON:0004185!1.20e-14!129;UBERON:0001737!1.30e-12!9;UBERON:0001041!3.13e-12!98;UBERON:0005911!1.31e-10!82;UBERON:0000466!5.66e-09!126;UBERON:0001048!9.84e-09!168;UBERON:0000062!1.15e-08!511;UBERON:0003104!1.22e-08!238;UBERON:0009142!1.22e-08!238;UBERON:0005631!1.34e-08!14;UBERON:0000158!1.34e-08!14;UBERON:0000064!1.62e-08!219;UBERON:0005177!8.92e-08!107;UBERON:0003929!9.40e-08!54;UBERON:0000072!1.22e-07!46;UBERON:0000464!1.72e-07!104;UBERON:0001557!2.16e-07!19;UBERON:0006554!2.78e-07!44;UBERON:0001004!2.79e-07!72;UBERON:0008947!3.39e-07!38;UBERON:0003258!3.39e-07!38;UBERON:0002075!4.07e-07!18;UBERON:0000481!4.69e-07!347;UBERON:0001008!5.55e-07!45 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.22e-32;9!UBERON:0001557;2.22e-32;9!UBERON:0003124;6.94e-12;3!UBERON:0000920;6.94e-12;3!UBERON:0002075;4.52e-11;18!UBERON:0000072;6.18e-09;37!UBERON:0001264;6.43e-09;10!UBERON:0002294;1.30e-07;7!UBERON:0001173;1.30e-07;7!UBERON:0000065;4.80e-07;44 | |ontology_enrichment_uberon_v019=UBERON:0001737;2.22e-32;9!UBERON:0001557;2.22e-32;9!UBERON:0003124;6.94e-12;3!UBERON:0000920;6.94e-12;3!UBERON:0002075;4.52e-11;18!UBERON:0000072;6.18e-09;37!UBERON:0001264;6.43e-09;10!UBERON:0002294;1.30e-07;7!UBERON:0001173;1.30e-07;7!UBERON:0000065;4.80e-07;44 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.28e-32,9;UBERON:0001557,2.43e-14,19;UBERON:0000920,6.84e-12,3;UBERON:0002075,3.77e-11,18;UBERON:0008947,1.94e-09,38;UBERON:0003258,1.94e-09,38;UBERON:0001264,6.19e-09,10;UBERON:0003124,1.54e-08,7;UBERON:0000072,3.50e-07,47 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0.655324116390517,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.973269740605272,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0.560677600142307,0,0.24666754841716,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0,0.277064115484183,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0.272746120590835,0.860413786167011,0.121973706129595,0,0.116193942869518,0,0.252320850875628,0,3.12899064659632,0,0,0,0.721879481669586,13.7235888046219,11.632343615389,13.7376287033585,17.2058597462535,13.944284421914,18.2698376715544,7.82021587328954,6.47530834913642,11.5424147083917,0.738155454624648,0,0,0,0,0,0,0,0.368965315629341,0.171567810298526,0.329250856225877,1.1240175325762,0,0,0,0,1.44331342025273,0.811512834825538,0.234817388471643,0,0,0.190254152234598,0,0,0,0,0,0.93733833986777,1.17587489739202,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0.1466765716419,0,3.57656445851882,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0.909382714338778,0,0,0,0,0.280660094433074,0,0,0,0,0,0,0,0,0,0.120859449591622,1.60405176242628,0.0920809889358963,0,0.182091168006717,0.393373244878272,0,0.15403067420883,0,4.38417673959782,0.316654886678627,0,0,0,1.54227252690289,0.270946437543853,0,0.509752546090077,0,0.223874754722178,0,0,0,0,0,1.54561517471583,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0.659006605437454,1.29151611801369,0,0.443430153536676,0.459446800413919,0,0,0,0,0,0,0,0,0.640944426764839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,3.10367830158997,0.296964680832639,0.921482106297696,0,0.140669416410513,0,0,0,0,0.276283915531148,0,0.715880777515084,0,0.311039587661807,0.179736702294654,2.86433879480975,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0.709163045303809,0,0,0,0,0,0,0,0,0,0.21787692703798,0.139423744278603,0,0.341826167541004,1.61394733071642,1.97466817701499,12.3858003991089,14.3550521879364,3.48070854927077,25.0526344728758,0,0,0,0,0,0,0,0,1.05499032264014,1.30586246527318,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0.450970258243478,0,10.634461963315,2.97892760287949,5.33685961292283,14.3366915727551,1.70765727617876,0,0.520679215005393,0,0,0,0,0.387025325156341,0.950161122120412,0.821154570532092,0.0969890164884194,0,0,0,0.19871461170299,0,1.75996244461323,1.12222348352147,0,0.39961921916426,0,0,0,0.432164393964449,0.745515213392595,0.235694034616795,4.07712618220842,3.24268823568233,0,0,0,0.273810757783986,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0.157566364614447,0.164831716762333,0.26961417541674,0.0984274815147488,0,0,0,0,0.412618309791701,0,0,0,0,0,0,0,0.950403028674658,0,3.26255835443057,0,0,0,0,0,0,1.19730191562487,0,0.170388021785422,0,0,0,0,0,4.79043146076122,0,0,0,0,0,0,0,3.83004754662109,0,0,0,0,0,0,0,0,0,0,0,0,0.624902039810533,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0.796191777397232,0.400027764663154,0,0,0,3.65977677773876,0,1.30497145982606,0,0,0,2.14906609297785,0,0,0,0.771656153083659,0.168942440653073,1.02496607435179,3.79973375904318,1.21543982470953,0,0,0,0,0,0.737318726261158,1.26787274015176,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0.352675943690684,0.3062454773532,0,0,0,0,0,0,0,0,0.490738592505128,0,0,0,0,0,0,0,0.60511520611056,0,7.85720083444267,0.163771917510097,1.6264169483875,0,0,0,0,0,0,0,0,0.383287282918786,0,0.336283722218824,0,0,2.83847584520444,0,0,0,0,0,0.333694205676207,0.156986185701028,0.157115589916002,1.12108865325516,0,1.07963795609311,1.43325506366115,0,0,0,0,0,0.207216164163037,0,0.691259661814092,0,0,0,0,0.9164274741762,0,0,0.894843454382338,0.098150233615243,2.19452264968085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0.178553938605658,0,0,0,0.458729283404541,0.430018749454354,0,0,0,0,0,0,0,0.630832124175395,0.109265571963696,0,1.32585478664576,0,1.10273879441814,0,0,0,0,0.103432995861895,0,0,0.0645889098360061,0.124149428591716,0.112131862580613,0,0,0,0,0.740872583160463,0.78894425931944,0,1.54666210360852,2.56145630106517,0,0.718601616852695,0,0,0,0,0,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0.655324116390517,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.973269740605272,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0.560677600142307,0,0.24666754841716,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0,0.277064115484183,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0.272746120590835,0.860413786167011,0.121973706129595,0,0.116193942869518,0,0.252320850875628,0,3.12899064659632,0,0,0,0.721879481669586,13.7235888046219,11.632343615389,13.7376287033585,17.2058597462535,13.944284421914,18.2698376715544,7.82021587328954,6.47530834913642,11.5424147083917,0.738155454624648,0,0,0,0,0,0,0,0.368965315629341,0.171567810298526,0.329250856225877,1.1240175325762,0,0,0,0,1.44331342025273,0.811512834825538,0.234817388471643,0,0,0.190254152234598,0,0,0,0,0,0.93733833986777,1.17587489739202,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0.1466765716419,0,3.57656445851882,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0.909382714338778,0,0,0,0,0.280660094433074,0,0,0,0,0,0,0,0,0,0.120859449591622,1.60405176242628,0.0920809889358963,0,0.182091168006717,0.393373244878272,0,0.15403067420883,0,4.38417673959782,0.316654886678627,0,0,0,1.54227252690289,0.270946437543853,0,0.509752546090077,0,0.223874754722178,0,0,0,0,0,1.54561517471583,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0.659006605437454,1.29151611801369,0,0.443430153536676,0.459446800413919,0,0,0,0,0,0,0,0,0.640944426764839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,3.10367830158997,0.296964680832639,0.921482106297696,0,0.140669416410513,0,0,0,0,0.276283915531148,0,0.715880777515084,0,0.311039587661807,0.179736702294654,2.86433879480975,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0.709163045303809,0,0,0,0,0,0,0,0,0,0.21787692703798,0.139423744278603,0,0.341826167541004,1.61394733071642,1.97466817701499,12.3858003991089,14.3550521879364,3.48070854927077,25.0526344728758,0,0,0,0,0,0,0,0,1.05499032264014,1.30586246527318,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0.450970258243478,0,10.634461963315,2.97892760287949,5.33685961292283,14.3366915727551,1.70765727617876,0,0.520679215005393,0,0,0,0,0.387025325156341,0.950161122120412,0.821154570532092,0.0969890164884194,0,0,0,0.19871461170299,0,1.75996244461323,1.12222348352147,0,0.39961921916426,0,0,0,0.432164393964449,0.745515213392595,0.235694034616795,4.07712618220842,3.24268823568233,0,0,0,0.273810757783986,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0.157566364614447,0.164831716762333,0.26961417541674,0.0984274815147488,0,0,0,0,0.412618309791701,0,0,0,0,0,0,0,0.950403028674658,0,3.26255835443057,0,0,0,0,0,0,1.19730191562487,0,0.170388021785422,0,0,0,0,0,4.79043146076122,0,0,0,0,0,0,0,3.83004754662109,0,0,0,0,0,0,0,0,0,0,0,0,0.624902039810533,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0.796191777397232,0.400027764663154,0,0,0,3.65977677773876,0,1.30497145982606,0,0,0,2.14906609297785,0,0,0,0.771656153083659,0.168942440653073,1.02496607435179,3.79973375904318,1.21543982470953,0,0,0,0,0,0.737318726261158,1.26787274015176,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0.352675943690684,0.3062454773532,0,0,0,0,0,0,0,0,0.490738592505128,0,0,0,0,0,0,0,0.60511520611056,0,7.85720083444267,0.163771917510097,1.6264169483875,0,0,0,0,0,0,0,0,0.383287282918786,0,0.336283722218824,0,0,2.83847584520444,0,0,0,0,0,0.333694205676207,0.156986185701028,0.157115589916002,1.12108865325516,0,1.07963795609311,1.43325506366115,0,0,0,0,0,0.207216164163037,0,0.691259661814092,0,0,0,0,0.9164274741762,0,0,0.894843454382338,0.098150233615243,2.19452264968085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0.178553938605658,0,0,0,0.458729283404541,0.430018749454354,0,0,0,0,0,0,0,0.630832124175395,0.109265571963696,0,1.32585478664576,0,1.10273879441814,0,0,0,0,0.103432995861895,0,0,0.0645889098360061,0.124149428591716,0.112131862580613,0,0,0,0,0.740872583160463,0.78894425931944,0,1.54666210360852,2.56145630106517,0,0.718601616852695,0,0,0,0,0,0 | ||
|short_description=p@chr19:17422953..17423002,+ | |short_description=p@chr19:17422953..17423002,+ | ||
}} | }} |
Latest revision as of 04:51, 26 July 2015
Short description: | p@chr19:17422953..17423002, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:17422953..17423002, + |
Coexpression cluster: | C3692_chorionic_Hep2_lens_embryonic_Placental_choriocarcinoma_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.52e-13 | 253 |
chorionic membrane mesenchymal stem cell | 6.84e-12 | 3 |
germ line cell | 8.88e-12 | 7 |
germ cell | 8.88e-12 | 7 |
epithelial cell of gall bladder | 2.07e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.28e-32 | 9 |
upper respiratory tract | 2.43e-14 | 19 |
egg chorion | 6.84e-12 | 3 |
viscus | 3.77e-11 | 18 |
respiratory primordium | 1.94e-09 | 38 |
endoderm of foregut | 1.94e-09 | 38 |
pancreas | 6.19e-09 | 10 |
chorion | 1.54e-08 | 7 |
segment of respiratory tract | 3.50e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 7.59e-20 | 106 |
cell type cancer | 9.02e-18 | 143 |
cancer | 1.83e-13 | 235 |
disease of cellular proliferation | 5.48e-13 | 239 |
clear cell adenocarcinoma | 3.40e-07 | 2 |