FFCP PHASE1:Hg19::chr19:15973808..15973821,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:15973808..15973821,- | |||
|description=CAGE_peak_at_chr19:15973808..15973821,- | |description=CAGE_peak_at_chr19:15973808..15973821,- | ||
|id=chr19:15973808..15973821,- | |id=chr19:15973808..15973821,- | ||
|ontology_enrichment_celltype=CL:0002274!2.14e-19!5;CL:0000457!2.14e-19!5;CL:0002191!2.14e-19!5;CL:0000097!2.14e-19!5;CL:0000831!2.14e-19!5;CL:0002028!2.14e-19!5;CL:1000507!1.10e-13!12;CL:1000494!1.10e-13!12;CL:1000497!1.65e-11!18;CL:0002518!1.65e-11!18;CL:0000239!2.44e-11!3;CL:1000615!2.44e-11!3;CL:0002306!2.44e-11!3;CL:0000163!1.33e-10!9;CL:1000449!5.24e-10!16;CL:0000764!5.29e-08!2;CL:0000765!5.29e-08!2;CL:0000050!5.29e-08!2;CL:0000038!5.29e-08!2;CL:0000558!5.29e-08!2;CL:0000547!5.29e-08!2;CL:0000549!5.29e-08!2;CL:0000550!5.29e-08!2;CL:0000552!5.29e-08!2 | |ontology_enrichment_celltype=CL:0002274!2.14e-19!5;CL:0000457!2.14e-19!5;CL:0002191!2.14e-19!5;CL:0000097!2.14e-19!5;CL:0000831!2.14e-19!5;CL:0002028!2.14e-19!5;CL:1000507!1.10e-13!12;CL:1000494!1.10e-13!12;CL:1000497!1.65e-11!18;CL:0002518!1.65e-11!18;CL:0000239!2.44e-11!3;CL:1000615!2.44e-11!3;CL:0002306!2.44e-11!3;CL:0000163!1.33e-10!9;CL:1000449!5.24e-10!16;CL:0000764!5.29e-08!2;CL:0000765!5.29e-08!2;CL:0000050!5.29e-08!2;CL:0000038!5.29e-08!2;CL:0000558!5.29e-08!2;CL:0000547!5.29e-08!2;CL:0000549!5.29e-08!2;CL:0000550!5.29e-08!2;CL:0000552!5.29e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0000097;5.48e-48;5!CL:0000163;1.09e-26;9!CL:1000497;5.19e-09;17!CL:0002518;5.19e-09;17!CL:1000507;5.62e-09;10!CL:1000494;5.62e-09;10!CL:0002149;3.01e-07;6!CL:0002255;3.01e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,3.92e-48,5;CL:0002028,3.92e-48,5;CL:0000163,9.08e-27,9;CL:1000497,4.87e-09,17;CL:0002518,4.87e-09,17;CL:1000507,5.62e-09,10;CL:1000494,5.62e-09,10;CL:0002149,3.15e-07,6;CL:0002255,3.15e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3001;3.01e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,3.15e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0006554!2.30e-14!44;UBERON:0001008!5.75e-14!45;UBERON:0009773!1.10e-13!12;UBERON:0001231!1.10e-13!12;UBERON:0004810!1.10e-13!12;UBERON:0006853!2.44e-11!3;UBERON:0007685!2.44e-11!3;UBERON:0004134!2.44e-11!3;UBERON:0002113!2.88e-11!27;UBERON:0003918!2.88e-11!27;UBERON:0005095!2.88e-11!27;UBERON:0007687!2.88e-11!27;UBERON:0004211!5.24e-10!16;UBERON:0001285!5.24e-10!16;UBERON:0007684!5.24e-10!16;UBERON:0003220!5.24e-10!16;UBERON:0004208!5.24e-10!16;UBERON:0006555!2.34e-09!17;UBERON:0005103!2.34e-09!17;UBERON:0000083!2.34e-09!17;UBERON:0009201!2.34e-09!17;UBERON:0004819!2.34e-09!17;UBERON:0006553!2.34e-09!17;UBERON:0003074!2.34e-09!17;UBERON:0003060!2.34e-09!17;UBERON:0000489!3.39e-09!32;UBERON:0000080!8.81e-09!18;UBERON:0002120!8.81e-09!18;UBERON:0004875!8.81e-09!18;UBERON:0005721!8.81e-09!18;UBERON:0005754!8.81e-09!18;UBERON:0007297!8.81e-09!18;UBERON:0004876!8.41e-08!20;UBERON:0000058!1.37e-07!26;UBERON:0003064!1.91e-07!37;UBERON:0003887!2.21e-07!21 | |ontology_enrichment_uberon=UBERON:0006554!2.30e-14!44;UBERON:0001008!5.75e-14!45;UBERON:0009773!1.10e-13!12;UBERON:0001231!1.10e-13!12;UBERON:0004810!1.10e-13!12;UBERON:0006853!2.44e-11!3;UBERON:0007685!2.44e-11!3;UBERON:0004134!2.44e-11!3;UBERON:0002113!2.88e-11!27;UBERON:0003918!2.88e-11!27;UBERON:0005095!2.88e-11!27;UBERON:0007687!2.88e-11!27;UBERON:0004211!5.24e-10!16;UBERON:0001285!5.24e-10!16;UBERON:0007684!5.24e-10!16;UBERON:0003220!5.24e-10!16;UBERON:0004208!5.24e-10!16;UBERON:0006555!2.34e-09!17;UBERON:0005103!2.34e-09!17;UBERON:0000083!2.34e-09!17;UBERON:0009201!2.34e-09!17;UBERON:0004819!2.34e-09!17;UBERON:0006553!2.34e-09!17;UBERON:0003074!2.34e-09!17;UBERON:0003060!2.34e-09!17;UBERON:0000489!3.39e-09!32;UBERON:0000080!8.81e-09!18;UBERON:0002120!8.81e-09!18;UBERON:0004875!8.81e-09!18;UBERON:0005721!8.81e-09!18;UBERON:0005754!8.81e-09!18;UBERON:0007297!8.81e-09!18;UBERON:0004876!8.41e-08!20;UBERON:0000058!1.37e-07!26;UBERON:0003064!1.91e-07!37;UBERON:0003887!2.21e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0004913;3.40e-11;1!UBERON:0003703;3.40e-11;1!UBERON:0001174;3.40e-11;1!UBERON:0004914;3.40e-11;1!UBERON:0006554;7.57e-11;30!UBERON:0001008;7.57e-11;30!UBERON:0002113;1.11e-09;24!UBERON:0011143;1.11e-09;24!UBERON:0004211;5.62e-09;10!UBERON:0009773;5.62e-09;10!UBERON:0001231;5.62e-09;10!UBERON:0004810;5.62e-09;10!UBERON:0000489;5.47e-08;29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004913,3.41e-11,1;UBERON:0003703,3.41e-11,1;UBERON:0001174,3.41e-11,1;UBERON:0004914,3.41e-11,1;UBERON:0004810,5.62e-09,10;UBERON:0002113,5.93e-09,26;UBERON:0003918,5.93e-09,26;UBERON:0011143,5.93e-09,26;UBERON:0005095,5.93e-09,26;UBERON:0007687,5.93e-09,26;UBERON:0000489,1.74e-07,31;UBERON:0006554,8.89e-07,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.86728553697808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839910640994298,0.708875486211932,0,0,0.766765358330422,1.97065295158377,9.33313400540196,2.07328115540772,3.747118788841,2.14612136824846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0.0920809889358963,0,0,0,0.902399225814824,1.23224539367064,1.56869953835371,0,0.105551628892876,0,0,0,0,0,0,0.764628819135115,1.66215201785745,0.223874754722178,0.877039506583738,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08890984861323,0,0.43050537267123,0,0,1.37834040124176,1.01489521846434,0,0.569647187174163,0,0,0,0.540031437238115,0,2.24330549367694,0,1.96032172784825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,3.1396051279005,0.664846727600626,0,0,0,0,0.158936578980379,0,0,0,0,0.995261931078505,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0.240476460754601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,8.61971467868059,0,0.226624183040251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61735932610474,0,0,0,0,0.20170506870352,0,0,0,5.91424344868181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,1.94334832096759,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14553434272025,0.31020638566432,2.8666168169323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.86728553697808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839910640994298,0.708875486211932,0,0,0.766765358330422,1.97065295158377,9.33313400540196,2.07328115540772,3.747118788841,2.14612136824846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0.0920809889358963,0,0,0,0.902399225814824,1.23224539367064,1.56869953835371,0,0.105551628892876,0,0,0,0,0,0,0.764628819135115,1.66215201785745,0.223874754722178,0.877039506583738,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08890984861323,0,0.43050537267123,0,0,1.37834040124176,1.01489521846434,0,0.569647187174163,0,0,0,0.540031437238115,0,2.24330549367694,0,1.96032172784825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,3.1396051279005,0.664846727600626,0,0,0,0,0.158936578980379,0,0,0,0,0.995261931078505,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0.240476460754601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,8.61971467868059,0,0.226624183040251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61735932610474,0,0,0,0,0.20170506870352,0,0,0,5.91424344868181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,1.94334832096759,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14553434272025,0.31020638566432,2.8666168169323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr19:15973808..15973821,- | |short_description=p@chr19:15973808..15973821,- | ||
}} | }} |
Latest revision as of 04:37, 26 July 2015
Short description: | p@chr19:15973808..15973821, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:15973808..15973821, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 3.92e-48 | 5 |
basophil mast progenitor cell | 3.92e-48 | 5 |
endocrine cell | 9.08e-27 | 9 |
kidney cell | 4.87e-09 | 17 |
kidney epithelial cell | 4.87e-09 | 17 |
kidney tubule cell | 5.62e-09 | 10 |
nephron tubule epithelial cell | 5.62e-09 | 10 |
epithelial cell of uterus | 3.15e-07 | 6 |
stromal cell of endometrium | 3.15e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
hepatopancreatic ampulla | 3.41e-11 | 1 |
extrahepatic bile duct | 3.41e-11 | 1 |
common bile duct | 3.41e-11 | 1 |
duodenal papilla | 3.41e-11 | 1 |
nephron tubule epithelium | 5.62e-09 | 10 |
kidney | 5.93e-09 | 26 |
kidney mesenchyme | 5.93e-09 | 26 |
upper urinary tract | 5.93e-09 | 26 |
kidney rudiment | 5.93e-09 | 26 |
kidney field | 5.93e-09 | 26 |
cavitated compound organ | 1.74e-07 | 31 |
urinary system structure | 8.89e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 3.15e-07 | 6 |