FFCP PHASE1:Hg19::chr18:59139576..59139586,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:59139576..59139586,+ | |||
|coexpression_cluster_id=C1801 | |||
|description=CAGE_peak_at_chr18:59139576..59139586,+ | |description=CAGE_peak_at_chr18:59139576..59139586,+ | ||
|id=chr18:59139576..59139586,+ | |id=chr18:59139576..59139586,+ | ||
|ontology_enrichment_celltype=CL:0002605!1.30e-28!3;CL:0000128!2.02e-21!7;CL:0000126!2.02e-21!7;CL:0000127!2.02e-21!7;CL:0002453!2.02e-21!7;CL:0002319!5.47e-21!25;CL:0000133!9.83e-20!59;CL:0000047!7.05e-19!8;CL:0002322!4.50e-17!5;CL:0000221!3.58e-16!71;CL:0000540!1.45e-14!6;CL:0000031!1.45e-14!6;CL:0000404!1.45e-14!6;CL:0000064!9.42e-13!3;CL:0005012!9.42e-13!3;CL:0000067!9.42e-13!3;CL:0002304!9.42e-13!3;CL:0000243!6.10e-09!15;CL:0000125!6.10e-09!15;CL:0000030!6.10e-09!15;CL:0000339!6.10e-09!15;CL:0000075!2.42e-08!27;CL:0000095!5.16e-08!17;CL:0000123!5.16e-08!17;CL:0000710!1.91e-07!20;CL:0000333!2.60e-07!41 | |ontology_enrichment_celltype=CL:0002605!1.30e-28!3;CL:0000128!2.02e-21!7;CL:0000126!2.02e-21!7;CL:0000127!2.02e-21!7;CL:0002453!2.02e-21!7;CL:0002319!5.47e-21!25;CL:0000133!9.83e-20!59;CL:0000047!7.05e-19!8;CL:0002322!4.50e-17!5;CL:0000221!3.58e-16!71;CL:0000540!1.45e-14!6;CL:0000031!1.45e-14!6;CL:0000404!1.45e-14!6;CL:0000064!9.42e-13!3;CL:0005012!9.42e-13!3;CL:0000067!9.42e-13!3;CL:0002304!9.42e-13!3;CL:0000243!6.10e-09!15;CL:0000125!6.10e-09!15;CL:0000030!6.10e-09!15;CL:0000339!6.10e-09!15;CL:0000075!2.42e-08!27;CL:0000095!5.16e-08!17;CL:0000123!5.16e-08!17;CL:0000710!1.91e-07!20;CL:0000333!2.60e-07!41 | ||
|ontology_enrichment_celltype_v019=CL:0002605;1.23e-38;3!CL:0002319;2.00e-26;25!CL:0000540;8.63e-20;6!CL:0000404;8.63e-20;6!CL:0000128;3.15e-17;7!CL:0000126;3.15e-17;7!CL:0000127;3.15e-17;7!CL:0000047;2.37e-15;2!CL:0000306;1.70e-08;4!CL:0002222;1.70e-08;4!CL:0002224;1.70e-08;4!CL:0000243;1.13e-07;15!CL:0000125;1.13e-07;15!CL:0000095;5.83e-07;17!CL:0002322;6.39e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.01e-38,3;CL:0000047,3.36e-32,8;CL:0002319,2.00e-26,25;CL:0000540,1.04e-19,6;CL:0000031,1.04e-19,6;CL:0000404,1.04e-19,6;CL:0000128,2.90e-17,7;CL:0000126,2.90e-17,7;CL:0000127,2.90e-17,7;CL:0002453,2.90e-17,7;CL:0000133,6.77e-17,59;CL:0000221,5.58e-14,72;CL:0000306,1.70e-08,4;CL:0002222,1.70e-08,4;CL:0002224,1.70e-08,4;CL:0000243,1.09e-07,15;CL:0000125,1.09e-07,15;CL:0000030,1.09e-07,15;CL:0000339,1.09e-07,15;CL:0000095,5.66e-07,17;CL:0000123,5.66e-07,17;CL:0002322,6.39e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000031;8.63e-20;6!CL:0000133;1.35e-08;59!CL:0000339;1.13e-07;15 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000956!3.56e-21!25;UBERON:0000203!3.56e-21!25;UBERON:0005743!1.03e-20!86;UBERON:0003056!5.44e-19!61;UBERON:0001017!7.46e-19!82;UBERON:0000073!1.45e-18!94;UBERON:0001016!1.45e-18!94;UBERON:0003075!5.78e-18!86;UBERON:0007284!5.78e-18!86;UBERON:0002346!4.49e-17!90;UBERON:0001869!1.75e-16!32;UBERON:0002791!5.69e-16!33;UBERON:0002020!1.73e-15!34;UBERON:0003528!1.73e-15!34;UBERON:0001893!1.73e-15!34;UBERON:0004121!3.21e-14!169;UBERON:0001049!5.18e-14!57;UBERON:0005068!5.18e-14!57;UBERON:0006241!5.18e-14!57;UBERON:0007135!5.18e-14!57;UBERON:0000924!7.86e-14!173;UBERON:0006601!7.86e-14!173;UBERON:0002616!1.70e-13!59;UBERON:0007625!2.00e-13!11;UBERON:0001778!9.42e-13!3;UBERON:0001775!9.42e-13!3;UBERON:0002780!9.58e-13!41;UBERON:0001890!9.58e-13!41;UBERON:0006240!9.58e-13!41;UBERON:0003080!2.00e-12!42;UBERON:0000033!8.44e-12!123;UBERON:0000970!2.99e-11!20;UBERON:0000955!3.56e-11!69;UBERON:0006238!3.56e-11!69;UBERON:0000153!3.75e-11!129;UBERON:0007811!3.75e-11!129;UBERON:0002104!1.04e-10!21;UBERON:0001950!2.01e-10!20;UBERON:0002902!3.96e-10!1;UBERON:0009899!3.96e-10!1;UBERON:0000488!8.56e-10!4;UBERON:0000020!9.14e-10!23;UBERON:0002619!1.66e-09!22;UBERON:0001032!2.37e-09!24;UBERON:0004456!2.37e-09!24;UBERON:0000019!7.58e-08!19;UBERON:0000047!7.58e-08!19;UBERON:0004088!7.58e-08!19;UBERON:0003072!7.58e-08!19;UBERON:0003071!7.58e-08!19;UBERON:0004128!7.58e-08!19;UBERON:0001456!4.12e-07!21;UBERON:0002203!8.22e-07!6;UBERON:0001768!8.22e-07!6 | |ontology_enrichment_uberon=UBERON:0000956!3.56e-21!25;UBERON:0000203!3.56e-21!25;UBERON:0005743!1.03e-20!86;UBERON:0003056!5.44e-19!61;UBERON:0001017!7.46e-19!82;UBERON:0000073!1.45e-18!94;UBERON:0001016!1.45e-18!94;UBERON:0003075!5.78e-18!86;UBERON:0007284!5.78e-18!86;UBERON:0002346!4.49e-17!90;UBERON:0001869!1.75e-16!32;UBERON:0002791!5.69e-16!33;UBERON:0002020!1.73e-15!34;UBERON:0003528!1.73e-15!34;UBERON:0001893!1.73e-15!34;UBERON:0004121!3.21e-14!169;UBERON:0001049!5.18e-14!57;UBERON:0005068!5.18e-14!57;UBERON:0006241!5.18e-14!57;UBERON:0007135!5.18e-14!57;UBERON:0000924!7.86e-14!173;UBERON:0006601!7.86e-14!173;UBERON:0002616!1.70e-13!59;UBERON:0007625!2.00e-13!11;UBERON:0001778!9.42e-13!3;UBERON:0001775!9.42e-13!3;UBERON:0002780!9.58e-13!41;UBERON:0001890!9.58e-13!41;UBERON:0006240!9.58e-13!41;UBERON:0003080!2.00e-12!42;UBERON:0000033!8.44e-12!123;UBERON:0000970!2.99e-11!20;UBERON:0000955!3.56e-11!69;UBERON:0006238!3.56e-11!69;UBERON:0000153!3.75e-11!129;UBERON:0007811!3.75e-11!129;UBERON:0002104!1.04e-10!21;UBERON:0001950!2.01e-10!20;UBERON:0002902!3.96e-10!1;UBERON:0009899!3.96e-10!1;UBERON:0000488!8.56e-10!4;UBERON:0000020!9.14e-10!23;UBERON:0002619!1.66e-09!22;UBERON:0001032!2.37e-09!24;UBERON:0004456!2.37e-09!24;UBERON:0000019!7.58e-08!19;UBERON:0000047!7.58e-08!19;UBERON:0004088!7.58e-08!19;UBERON:0003072!7.58e-08!19;UBERON:0003071!7.58e-08!19;UBERON:0004128!7.58e-08!19;UBERON:0001456!4.12e-07!21;UBERON:0002203!8.22e-07!6;UBERON:0001768!8.22e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0010077;1.70e-08;4!UBERON:0005389;1.70e-08;4!UBERON:0000484;1.70e-08;4!UBERON:0000965;1.70e-08;4!UBERON:0001803;1.70e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.51e-09,81;UBERON:0010077,1.70e-08,4;UBERON:0005389,1.70e-08,4;UBERON:0000484,1.70e-08,4;UBERON:0002546,1.70e-08,4;UBERON:0000965,1.70e-08,4;UBERON:0001803,1.70e-08,4;UBERON:0003073,1.70e-08,4;UBERON:0005426,1.70e-08,4;UBERON:0001016,5.21e-08,89 | |||
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|short_description=p@chr18:59139576..59139586,+ | |short_description=p@chr18:59139576..59139586,+ | ||
}} | }} |
Latest revision as of 01:43, 26 July 2015
Short description: | p@chr18:59139576..59139586, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:59139576..59139586, + |
Coexpression cluster: | C1801_Lens_Astrocyte_Neural_Neurons_H9_eye_parietal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.01e-38 | 3 |
neuronal stem cell | 3.36e-32 | 8 |
neural cell | 2.00e-26 | 25 |
neuron | 1.04e-19 | 6 |
neuroblast | 1.04e-19 | 6 |
electrically signaling cell | 1.04e-19 | 6 |
oligodendrocyte | 2.90e-17 | 7 |
macroglial cell | 2.90e-17 | 7 |
astrocyte | 2.90e-17 | 7 |
oligodendrocyte precursor cell | 2.90e-17 | 7 |
neurectodermal cell | 6.77e-17 | 59 |
ectodermal cell | 5.58e-14 | 72 |
crystallin accumulating cell | 1.70e-08 | 4 |
vertebrate lens cell | 1.70e-08 | 4 |
lens epithelial cell | 1.70e-08 | 4 |
glial cell (sensu Vertebrata) | 1.09e-07 | 15 |
glial cell | 1.09e-07 | 15 |
glioblast | 1.09e-07 | 15 |
glioblast (sensu Vertebrata) | 1.09e-07 | 15 |
neuron associated cell | 5.66e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 5.66e-07 | 17 |
embryonic stem cell | 6.39e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.51e-09 | 81 |
cuboidal epithelium | 1.70e-08 | 4 |
transparent eye structure | 1.70e-08 | 4 |
simple cuboidal epithelium | 1.70e-08 | 4 |
cranial placode | 1.70e-08 | 4 |
lens of camera-type eye | 1.70e-08 | 4 |
epithelium of lens | 1.70e-08 | 4 |
lens placode | 1.70e-08 | 4 |
lens vesicle | 1.70e-08 | 4 |
nervous system | 5.21e-08 | 89 |