FFCP PHASE1:Hg19::chr18:59139514..59139535,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:59139514..59139535,+ | |||
|coexpression_cluster_id=C1801 | |||
|description=CAGE_peak_at_chr18:59139514..59139535,+ | |description=CAGE_peak_at_chr18:59139514..59139535,+ | ||
|id=chr18:59139514..59139535,+ | |id=chr18:59139514..59139535,+ | ||
|ontology_enrichment_celltype=CL:0002322!1.49e-21!5;CL:0002605!3.32e-21!3;CL:0000064!8.43e-20!3;CL:0005012!8.43e-20!3;CL:0000067!8.43e-20!3;CL:0002304!8.43e-20!3;CL:0000133!1.75e-18!59;CL:0000128!9.95e-16!7;CL:0000126!9.95e-16!7;CL:0000127!9.95e-16!7;CL:0002453!9.95e-16!7;CL:0000221!5.49e-15!71;CL:0002319!1.88e-11!25;CL:0000710!2.62e-11!20;CL:0000075!3.74e-11!27;CL:0000333!8.72e-09!41;CL:0000047!3.48e-08!8 | |ontology_enrichment_celltype=CL:0002322!1.49e-21!5;CL:0002605!3.32e-21!3;CL:0000064!8.43e-20!3;CL:0005012!8.43e-20!3;CL:0000067!8.43e-20!3;CL:0002304!8.43e-20!3;CL:0000133!1.75e-18!59;CL:0000128!9.95e-16!7;CL:0000126!9.95e-16!7;CL:0000127!9.95e-16!7;CL:0002453!9.95e-16!7;CL:0000221!5.49e-15!71;CL:0002319!1.88e-11!25;CL:0000710!2.62e-11!20;CL:0000075!3.74e-11!27;CL:0000333!8.72e-09!41;CL:0000047!3.48e-08!8 | ||
|ontology_enrichment_celltype_v019=CL:0002605;9.61e-85;3!CL:0000128;6.30e-37;7!CL:0000126;6.30e-37;7!CL:0000127;6.30e-37;7!CL:0002319;1.95e-26;25!CL:0000243;1.01e-15;15!CL:0000125;1.01e-15;15!CL:0000047;1.78e-15;2!CL:0000095;3.79e-14;17!CL:0000306;1.82e-08;4!CL:0002222;1.82e-08;4!CL:0002224;1.82e-08;4!CL:0002322;6.21e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,9.61e-85,3;CL:0000128,6.30e-37,7;CL:0000126,6.30e-37,7;CL:0000127,6.30e-37,7;CL:0002453,6.30e-37,7;CL:0002319,1.89e-26,25;CL:0000133,6.59e-17,59;CL:0000243,1.01e-15,15;CL:0000125,1.01e-15,15;CL:0000030,1.01e-15,15;CL:0000339,1.01e-15,15;CL:0000047,4.07e-15,8;CL:0000095,3.79e-14,17;CL:0000123,3.79e-14,17;CL:0000221,5.45e-14,72;CL:0000333,5.02e-11,41;CL:0000306,1.82e-08,4;CL:0002222,1.82e-08,4;CL:0002224,1.82e-08,4;CL:0002322,6.39e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000339;1.01e-15;15!CL:0000133;7.55e-11;59!CL:0000221;2.14e-08;72 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0000956;1.55e-10;25!UBERON:0000203;1.55e-10;25!UBERON:0002791;9.02e-09;32!UBERON:0001869;9.02e-09;32!UBERON:0010077;1.82e-08;4!UBERON:0005389;1.82e-08;4!UBERON:0000484;1.82e-08;4!UBERON:0000965;1.82e-08;4!UBERON:0001803;1.82e-08;4!UBERON:0003528;2.54e-08;34!UBERON:0002020;2.54e-08;34!UBERON:0001893;2.54e-08;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,1.55e-10,25;UBERON:0000203,1.55e-10,25;UBERON:0001017,7.39e-09,81;UBERON:0010077,1.82e-08,4;UBERON:0005389,1.82e-08,4;UBERON:0000484,1.82e-08,4;UBERON:0002546,1.82e-08,4;UBERON:0000965,1.82e-08,4;UBERON:0001803,1.82e-08,4;UBERON:0003073,1.82e-08,4;UBERON:0005426,1.82e-08,4;UBERON:0002791,1.91e-08,32;UBERON:0001869,1.91e-08,32;UBERON:0001016,5.13e-08,89;UBERON:0003528,5.33e-08,34;UBERON:0002020,5.33e-08,34;UBERON:0001893,5.33e-08,34;UBERON:0003056,8.15e-08,61;UBERON:0002780,9.05e-07,41;UBERON:0001890,9.05e-07,41;UBERON:0003080,9.05e-07,41;UBERON:0006240,9.05e-07,41 | |||
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|short_description=p@chr18:59139514..59139535,+ | |short_description=p@chr18:59139514..59139535,+ | ||
}} | }} |
Latest revision as of 01:43, 26 July 2015
Short description: | p@chr18:59139514..59139535, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:59139514..59139535, + |
Coexpression cluster: | C1801_Lens_Astrocyte_Neural_Neurons_H9_eye_parietal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 9.61e-85 | 3 |
oligodendrocyte | 6.30e-37 | 7 |
macroglial cell | 6.30e-37 | 7 |
astrocyte | 6.30e-37 | 7 |
oligodendrocyte precursor cell | 6.30e-37 | 7 |
neural cell | 1.89e-26 | 25 |
neurectodermal cell | 6.59e-17 | 59 |
glial cell (sensu Vertebrata) | 1.01e-15 | 15 |
glial cell | 1.01e-15 | 15 |
glioblast | 1.01e-15 | 15 |
glioblast (sensu Vertebrata) | 1.01e-15 | 15 |
neuronal stem cell | 4.07e-15 | 8 |
neuron associated cell | 3.79e-14 | 17 |
neuron associated cell (sensu Vertebrata) | 3.79e-14 | 17 |
ectodermal cell | 5.45e-14 | 72 |
migratory neural crest cell | 5.02e-11 | 41 |
crystallin accumulating cell | 1.82e-08 | 4 |
vertebrate lens cell | 1.82e-08 | 4 |
lens epithelial cell | 1.82e-08 | 4 |
embryonic stem cell | 6.39e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 1.55e-10 | 25 |
pallium | 1.55e-10 | 25 |
central nervous system | 7.39e-09 | 81 |
cuboidal epithelium | 1.82e-08 | 4 |
transparent eye structure | 1.82e-08 | 4 |
simple cuboidal epithelium | 1.82e-08 | 4 |
cranial placode | 1.82e-08 | 4 |
lens of camera-type eye | 1.82e-08 | 4 |
epithelium of lens | 1.82e-08 | 4 |
lens placode | 1.82e-08 | 4 |
lens vesicle | 1.82e-08 | 4 |
regional part of telencephalon | 1.91e-08 | 32 |
cerebral hemisphere | 1.91e-08 | 32 |
nervous system | 5.13e-08 | 89 |
brain grey matter | 5.33e-08 | 34 |
gray matter | 5.33e-08 | 34 |
telencephalon | 5.33e-08 | 34 |
pre-chordal neural plate | 8.15e-08 | 61 |
regional part of forebrain | 9.05e-07 | 41 |
forebrain | 9.05e-07 | 41 |
anterior neural tube | 9.05e-07 | 41 |
future forebrain | 9.05e-07 | 41 |