FFCP PHASE1:Hg19::chr18:59139457..59139488,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:59139457..59139488,+ | |||
|coexpression_cluster_id=C1801 | |coexpression_cluster_id=C1801 | ||
|description=CAGE_peak_at_chr18:59139457..59139488,+ | |description=CAGE_peak_at_chr18:59139457..59139488,+ | ||
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|ontology_enrichment_celltype=CL:0000128!1.59e-19!7;CL:0000126!1.59e-19!7;CL:0000127!1.59e-19!7;CL:0002453!1.59e-19!7;CL:0002605!1.01e-17!3;CL:0002322!1.34e-17!5;CL:0000133!5.86e-17!59;CL:0002319!4.15e-15!25;CL:0000221!1.24e-13!71;CL:0000047!1.84e-11!8;CL:0000540!5.64e-09!6;CL:0000031!5.64e-09!6;CL:0000404!5.64e-09!6;CL:0000333!8.62e-09!41;CL:0000064!4.72e-08!3;CL:0005012!4.72e-08!3;CL:0000067!4.72e-08!3;CL:0002304!4.72e-08!3;CL:0002603!6.26e-08!3;CL:0000243!6.94e-08!15;CL:0000125!6.94e-08!15;CL:0000030!6.94e-08!15;CL:0000339!6.94e-08!15;CL:0000095!5.05e-07!17;CL:0000123!5.05e-07!17;CL:0000075!9.61e-07!27 | |ontology_enrichment_celltype=CL:0000128!1.59e-19!7;CL:0000126!1.59e-19!7;CL:0000127!1.59e-19!7;CL:0002453!1.59e-19!7;CL:0002605!1.01e-17!3;CL:0002322!1.34e-17!5;CL:0000133!5.86e-17!59;CL:0002319!4.15e-15!25;CL:0000221!1.24e-13!71;CL:0000047!1.84e-11!8;CL:0000540!5.64e-09!6;CL:0000031!5.64e-09!6;CL:0000404!5.64e-09!6;CL:0000333!8.62e-09!41;CL:0000064!4.72e-08!3;CL:0005012!4.72e-08!3;CL:0000067!4.72e-08!3;CL:0002304!4.72e-08!3;CL:0002603!6.26e-08!3;CL:0000243!6.94e-08!15;CL:0000125!6.94e-08!15;CL:0000030!6.94e-08!15;CL:0000339!6.94e-08!15;CL:0000095!5.05e-07!17;CL:0000123!5.05e-07!17;CL:0000075!9.61e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0002605;1.07e-43;3!CL:0002319;1.83e-25;25!CL:0000540;6.01e-22;6!CL:0000404;6.01e-22;6!CL:0000128;3.63e-19;7!CL:0000126;3.63e-19;7!CL:0000127;3.63e-19;7!CL:0002322;2.99e-12;5!CL:0000075;1.07e-08;27!CL:0000047;1.61e-08;2!CL:0000243;3.06e-08;15!CL:0000125;3.06e-08;15!CL:0000095;1.99e-07;17!CL:0000710;6.49e-07;20 | |ontology_enrichment_celltype_v019=CL:0002605;1.07e-43;3!CL:0002319;1.83e-25;25!CL:0000540;6.01e-22;6!CL:0000404;6.01e-22;6!CL:0000128;3.63e-19;7!CL:0000126;3.63e-19;7!CL:0000127;3.63e-19;7!CL:0002322;2.99e-12;5!CL:0000075;1.07e-08;27!CL:0000047;1.61e-08;2!CL:0000243;3.06e-08;15!CL:0000125;3.06e-08;15!CL:0000095;1.99e-07;17!CL:0000710;6.49e-07;20 | ||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.24e-43,3;CL:0000047,9.73e-29,8;CL:0002319,1.94e-25,25;CL:0000133,2.84e-22,59;CL:0000540,6.70e-22,6;CL:0000031,6.70e-22,6;CL:0000404,6.70e-22,6;CL:0000128,3.86e-19,7;CL:0000126,3.86e-19,7;CL:0000127,3.86e-19,7;CL:0002453,3.86e-19,7;CL:0000221,3.41e-18,72;CL:0002322,3.16e-12,5;CL:0000075,1.07e-08,27;CL:0000333,2.73e-08,41;CL:0000243,3.13e-08,15;CL:0000125,3.13e-08,15;CL:0000030,3.13e-08,15;CL:0000339,3.13e-08,15;CL:0000095,2.04e-07,17;CL:0000123,2.04e-07,17;CL:0000710,6.56e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000031;6.01e-22;6!CL:0000133;2.10e-14;59!CL:0000221;1.54e-08;72!CL:0000339;3.06e-08;15 | |ontology_enrichment_development_v019=CL:0000031;6.01e-22;6!CL:0000133;2.10e-14;59!CL:0000221;1.54e-08;72!CL:0000339;3.06e-08;15 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0000956;4.24e-09;25!UBERON:0000203;4.24e-09;25!UBERON:0002791;5.36e-07;32!UBERON:0001869;5.36e-07;32!UBERON:0003528;5.39e-07;34!UBERON:0002020;5.39e-07;34!UBERON:0001893;5.39e-07;34!UBERON:0000970;5.74e-07;20 | |ontology_enrichment_uberon_v019=UBERON:0000956;4.24e-09;25!UBERON:0000203;4.24e-09;25!UBERON:0002791;5.36e-07;32!UBERON:0001869;5.36e-07;32!UBERON:0003528;5.39e-07;34!UBERON:0002020;5.39e-07;34!UBERON:0001893;5.39e-07;34!UBERON:0000970;5.74e-07;20 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.74e-10,81;UBERON:0001016,3.29e-09,89;UBERON:0000956,4.57e-09,25;UBERON:0000203,4.57e-09,25;UBERON:0003056,5.10e-08,61;UBERON:0002791,3.45e-07,32;UBERON:0001869,3.45e-07,32;UBERON:0004121,3.92e-07,171;UBERON:0000924,3.92e-07,171;UBERON:0006601,3.92e-07,171;UBERON:0003528,8.66e-07,34;UBERON:0002020,8.66e-07,34;UBERON:0001893,8.66e-07,34 | |||
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|short_description=p@chr18:59139457..59139488,+ | |short_description=p@chr18:59139457..59139488,+ | ||
}} | }} |
Latest revision as of 01:43, 26 July 2015
Short description: | p@chr18:59139457..59139488, + |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:59139457..59139488, + |
Coexpression cluster: | C1801_Lens_Astrocyte_Neural_Neurons_H9_eye_parietal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.24e-43 | 3 |
neuronal stem cell | 9.73e-29 | 8 |
neural cell | 1.94e-25 | 25 |
neurectodermal cell | 2.84e-22 | 59 |
neuron | 6.70e-22 | 6 |
neuroblast | 6.70e-22 | 6 |
electrically signaling cell | 6.70e-22 | 6 |
oligodendrocyte | 3.86e-19 | 7 |
macroglial cell | 3.86e-19 | 7 |
astrocyte | 3.86e-19 | 7 |
oligodendrocyte precursor cell | 3.86e-19 | 7 |
ectodermal cell | 3.41e-18 | 72 |
embryonic stem cell | 3.16e-12 | 5 |
columnar/cuboidal epithelial cell | 1.07e-08 | 27 |
migratory neural crest cell | 2.73e-08 | 41 |
glial cell (sensu Vertebrata) | 3.13e-08 | 15 |
glial cell | 3.13e-08 | 15 |
glioblast | 3.13e-08 | 15 |
glioblast (sensu Vertebrata) | 3.13e-08 | 15 |
neuron associated cell | 2.04e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 2.04e-07 | 17 |
neurecto-epithelial cell | 6.56e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.74e-10 | 81 |
nervous system | 3.29e-09 | 89 |
cerebral cortex | 4.57e-09 | 25 |
pallium | 4.57e-09 | 25 |
pre-chordal neural plate | 5.10e-08 | 61 |
regional part of telencephalon | 3.45e-07 | 32 |
cerebral hemisphere | 3.45e-07 | 32 |
ectoderm-derived structure | 3.92e-07 | 171 |
ectoderm | 3.92e-07 | 171 |
presumptive ectoderm | 3.92e-07 | 171 |
brain grey matter | 8.66e-07 | 34 |
gray matter | 8.66e-07 | 34 |
telencephalon | 8.66e-07 | 34 |