FFCP PHASE1:Hg19::chr18:55780205..55780223,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:55780205..55780223,+ | |||
|coexpression_cluster_id=C89 | |||
|description=CAGE_peak_at_chr18:55780205..55780223,+ | |description=CAGE_peak_at_chr18:55780205..55780223,+ | ||
|id=chr18:55780205..55780223,+ | |id=chr18:55780205..55780223,+ | ||
|ontology_enrichment_celltype=CL:0002586!6.63e-19!3;CL:0000149!1.97e-14!4 | |ontology_enrichment_celltype=CL:0002586!6.63e-19!3;CL:0000149!1.97e-14!4 | ||
|ontology_enrichment_celltype_v019=CL:0002586;2.07e-12;3!CL:0000149;1.22e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,2.07e-12,3;CL:0000149,1.22e-09,4 | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.45e-12;3 | |||
|ontology_enrichment_disease=DOID:12603!2.11e-14!1 | |ontology_enrichment_disease=DOID:12603!2.11e-14!1 | ||
|ontology_enrichment_disease_v019=DOID:5409;1.12e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,1.12e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0000966!5.60e-43!5;UBERON:0005388!5.60e-43!5;UBERON:0001802!5.60e-43!5;UBERON:0001781!6.63e-19!3;UBERON:0001782!6.63e-19!3;UBERON:0005424!6.63e-19!3;UBERON:0000970!9.53e-17!20;UBERON:0002104!5.96e-16!21;UBERON:0000020!1.45e-14!23;UBERON:0001032!5.86e-14!24;UBERON:0004456!5.86e-14!24;UBERON:0000019!1.41e-11!19;UBERON:0000047!1.41e-11!19;UBERON:0004088!1.41e-11!19;UBERON:0003072!1.41e-11!19;UBERON:0003071!1.41e-11!19;UBERON:0004128!1.41e-11!19;UBERON:0001456!1.69e-10!21;UBERON:0001905!6.15e-08!2;UBERON:0002757!6.15e-08!2;UBERON:0010134!6.15e-08!2;UBERON:0002784!6.15e-08!2;UBERON:0005408!6.15e-08!2;UBERON:0001899!6.15e-08!2;UBERON:0005085!1.16e-07!29;UBERON:0005743!6.81e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;2.22e-27;5!UBERON:0005388;2.22e-27;5!UBERON:0001802;2.22e-27;5!UBERON:0000970;1.32e-15;20!UBERON:0002104;6.69e-15;21!UBERON:0000020;1.12e-13;23!UBERON:0001032;3.86e-13;24!UBERON:0004456;3.86e-13;24!UBERON:0001781;2.07e-12;3!UBERON:0001782;2.07e-12;3!UBERON:0000019;5.63e-08;19!UBERON:0000047;5.63e-08;19!UBERON:0004088;5.63e-08;19!UBERON:0010230;5.63e-08;19!UBERON:0001456;2.64e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,4.86e-23,6;UBERON:0005388,4.86e-23,6;UBERON:0001802,4.86e-23,6;UBERON:0000970,6.53e-15,21;UBERON:0002104,6.53e-15,21;UBERON:0000020,3.78e-13,24;UBERON:0001032,3.78e-13,24;UBERON:0004456,3.78e-13,24;UBERON:0001782,2.07e-12,3;UBERON:0005424,2.07e-12,3;UBERON:0001781,1.22e-09,4;UBERON:0000019,1.25e-07,20;UBERON:0000047,1.25e-07,20;UBERON:0010312,1.25e-07,20;UBERON:0004088,1.25e-07,20;UBERON:0010230,1.25e-07,20;UBERON:0003072,1.25e-07,20;UBERON:0004128,1.25e-07,20;UBERON:0003071,1.25e-07,20;UBERON:0001456,5.09e-07,22 | |||
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|short_description=p@chr18:55780205..55780223,+ | |short_description=p@chr18:55780205..55780223,+ | ||
}} | }} |
Latest revision as of 01:32, 26 July 2015
Short description: | p@chr18:55780205..55780223, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:55780205..55780223, + |
Coexpression cluster: | C89_small_retinoblastoma_medulloblastoma_iPS_acantholytic_eye_bronchogenic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 2.07e-12 | 3 |
visual pigment cell | 1.22e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
retina | 4.86e-23 | 6 |
photoreceptor array | 4.86e-23 | 6 |
posterior segment of eyeball | 4.86e-23 | 6 |
eye | 6.53e-15 | 21 |
visual system | 6.53e-15 | 21 |
sense organ | 3.78e-13 | 24 |
sensory system | 3.78e-13 | 24 |
entire sense organ system | 3.78e-13 | 24 |
pigmented layer of retina | 2.07e-12 | 3 |
presumptive retinal pigmented epithelium | 2.07e-12 | 3 |
layer of retina | 1.22e-09 | 4 |
camera-type eye | 1.25e-07 | 20 |
simple eye | 1.25e-07 | 20 |
immature eye | 1.25e-07 | 20 |
ocular region | 1.25e-07 | 20 |
eyeball of camera-type eye | 1.25e-07 | 20 |
optic cup | 1.25e-07 | 20 |
optic vesicle | 1.25e-07 | 20 |
eye primordium | 1.25e-07 | 20 |
face | 5.09e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.12e-09 | 4 |