FFCP PHASE1:Hg19::chr18:13542298..13542308,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:13542298..13542308,+ | |||
|coexpression_cluster_id=C86 | |coexpression_cluster_id=C86 | ||
|description=CAGE_peak_at_chr18:13542298..13542308,+ | |description=CAGE_peak_at_chr18:13542298..13542308,+ | ||
|id=chr18:13542298..13542308,+ | |id=chr18:13542298..13542308,+ | ||
|ontology_enrichment_celltype=CL:0002563!1.62e-11!4 | |ontology_enrichment_celltype=CL:0002563!1.62e-11!4 | ||
|ontology_enrichment_celltype_v019=CL:0000167;1.81e-40;1!CL:0000164;1.81e-40;1!CL:0000502;1.81e-40;1!CL:0000172;1.81e-40;1!CL:0000173;1.81e-40;1!CL:0002253;3.11e-21;2!CL:0002563;2.53e-11;4!CL:0002327;3.26e-11;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,9.91e-41,1;CL:0000164,9.91e-41,1;CL:0000502,9.91e-41,1;CL:0000172,9.91e-41,1;CL:0000173,9.91e-41,1;CL:0002351,9.91e-41,1;CL:0002253,3.11e-21,2;CL:0002563,2.53e-11,4;CL:0002327,3.42e-11,4 | |||
|ontology_enrichment_development_v019=CL:0002351;1.81e-40;1!UBERON:0008425;1.81e-40;1 | |||
|ontology_enrichment_disease=DOID:5093!5.69e-12!4;DOID:1612!5.69e-12!4 | |ontology_enrichment_disease=DOID:5093!5.69e-12!4;DOID:1612!5.69e-12!4 | ||
|ontology_enrichment_disease_v019=DOID:4430;1.81e-40;1!DOID:5093;3.31e-40;4!DOID:1612;3.31e-40;4!DOID:169;6.55e-08;6!DOID:299;2.24e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,9.91e-41,1;DOID:5093,4.94e-40,4;DOID:1612,4.94e-40,4;DOID:169,5.92e-08,6;DOID:299,2.35e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0001242!1.62e-11!4;UBERON:0001262!1.62e-11!4;UBERON:0004786!1.62e-11!4;UBERON:0004808!1.62e-11!4;UBERON:0001277!1.62e-11!4;UBERON:0003350!2.65e-09!5;UBERON:0000310!4.94e-08!10;UBERON:0001443!2.65e-07!11 | |ontology_enrichment_uberon=UBERON:0001242!1.62e-11!4;UBERON:0001262!1.62e-11!4;UBERON:0004786!1.62e-11!4;UBERON:0004808!1.62e-11!4;UBERON:0001277!1.62e-11!4;UBERON:0003350!2.65e-09!5;UBERON:0000310!4.94e-08!10;UBERON:0001443!2.65e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0000310;8.13e-17;10!UBERON:0001443;2.17e-15;11!UBERON:0001052;2.53e-11;4!UBERON:0001242;2.53e-11;4!UBERON:0001262;2.53e-11;4!UBERON:0004786;2.53e-11;4!UBERON:0004808;2.53e-11;4!UBERON:0001277;2.53e-11;4!UBERON:0001911;3.26e-11;4!UBERON:0004907;2.53e-09;5!UBERON:0000485;5.08e-07;7!UBERON:0003929;5.08e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000310,9.54e-17,10;UBERON:0001443,2.51e-15,11;UBERON:0001052,2.53e-11,4;UBERON:0001242,2.53e-11,4;UBERON:0001262,2.53e-11,4;UBERON:0004786,2.53e-11,4;UBERON:0004808,2.53e-11,4;UBERON:0001277,2.53e-11,4;UBERON:0001911,3.42e-11,4;UBERON:0005333,3.42e-11,4;UBERON:0008425,3.42e-11,4;UBERON:0005311,3.42e-11,4;UBERON:0004907,2.53e-09,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,1.30213880542617,1.57427999993152,0,0,0,0,0,0,0,0,0,0,0,0,0,0.435753854075961,0,0.384751292518985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.19332735381019,0.995261931078505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247247575143499,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0.919036730290385,0,0,0,0,0,0,0,0,1.798532254171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314531883711793,0,0,0,0.123935764259002,0,0,0,0,0,0.6124909547064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156986185701028,0,0.280272163313789,0,0,0,0.0714765441766563,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0.219881033490858,0.452888530700021,0.0771741581079447,0,0,0,1.88541237681301,0,0,0,0,0,0,0,0,0,0,0,0.917458566809082,0,0.315543124386369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0.366724332548599,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,1.30213880542617,1.57427999993152,0,0,0,0,0,0,0,0,0,0,0,0,0,0.435753854075961,0,0.384751292518985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.19332735381019,0.995261931078505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247247575143499,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0.919036730290385,0,0,0,0,0,0,0,0,1.798532254171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314531883711793,0,0,0,0.123935764259002,0,0,0,0,0,0.6124909547064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156986185701028,0,0.280272163313789,0,0,0,0.0714765441766563,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0.219881033490858,0.452888530700021,0.0771741581079447,0,0,0,1.88541237681301,0,0,0,0,0,0,0,0,0,0,0,0.917458566809082,0,0.315543124386369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0.366724332548599,0,0,0,0 | ||
|short_description=p@chr18:13542298..13542308,+ | |short_description=p@chr18:13542298..13542308,+ | ||
}} | }} |
Latest revision as of 23:46, 25 July 2015
Short description: | p@chr18:13542298..13542308, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:13542298..13542308, + |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 9.91e-41 | 1 |
enteroendocrine cell | 9.91e-41 | 1 |
type D enteroendocrine cell | 9.91e-41 | 1 |
somatostatin secreting cell | 9.91e-41 | 1 |
pancreatic D cell | 9.91e-41 | 1 |
progenitor cell of endocrine pancreas | 9.91e-41 | 1 |
epithelial cell of large intestine | 3.11e-21 | 2 |
intestinal epithelial cell | 2.53e-11 | 4 |
mammary gland epithelial cell | 3.42e-11 | 4 |
Ontology term | p-value | n |
---|---|---|
breast | 9.54e-17 | 10 |
chest | 2.51e-15 | 11 |
rectum | 2.53e-11 | 4 |
intestinal mucosa | 2.53e-11 | 4 |
wall of intestine | 2.53e-11 | 4 |
gastrointestinal system mucosa | 2.53e-11 | 4 |
gastrointestinal system epithelium | 2.53e-11 | 4 |
intestinal epithelium | 2.53e-11 | 4 |
mammary gland | 3.42e-11 | 4 |
mammary bud | 3.42e-11 | 4 |
mammary ridge | 3.42e-11 | 4 |
mammary placode | 3.42e-11 | 4 |
lower digestive tract | 2.53e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 9.91e-41 | 1 |
thoracic cancer | 4.94e-40 | 4 |
breast cancer | 4.94e-40 | 4 |
neuroendocrine tumor | 5.92e-08 | 6 |
adenocarcinoma | 2.35e-07 | 25 |