FFCP PHASE1:Hg19::chr17:62770351..62770363,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:62770351..62770363,-
|short_description=p@chr17:62770351..62770363,-
|description=CAGE_peak_at_chr17:62770351..62770363,-
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr17:62770351..62770363,- | |||
|description=CAGE_peak_at_chr17:62770351..62770363,- | |||
|id=chr17:62770351..62770363,- | |||
|ontology_enrichment_celltype=CL:0000066!6.72e-22!254;CL:0000223!1.15e-13!59;CL:0002076!7.93e-11!43;CL:0002251!3.46e-10!21;CL:0000039!3.84e-08!7;CL:0000586!3.84e-08!7 | |||
|ontology_enrichment_celltype_v019=CL:0002076;7.18e-10;42!CL:0002149;3.78e-08;6!CL:0002255;3.78e-08;6!CL:0000082;3.97e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.21e-20,253;CL:0000223,8.45e-14,58;CL:0002076,1.27e-10,42;CL:0002149,4.23e-08,6;CL:0002255,4.23e-08,6;CL:0000082,3.99e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0001041;1.12e-16;30!UBERON:0006595;1.43e-07;86!CL:0000223;2.44e-07;58!UBERON:0008947;6.20e-07;29 | |||
|ontology_enrichment_disease=DOID:305!2.72e-51!106;DOID:0050687!1.93e-45!143;DOID:162!1.17e-27!235;DOID:14566!1.83e-26!239;DOID:299!2.35e-19!25;DOID:1749!1.22e-18!14;DOID:7!1.47e-10!39;DOID:0050686!3.63e-09!137;DOID:0050615!2.25e-08!16;DOID:1324!1.16e-07!15;DOID:5093!9.97e-07!4;DOID:1612!9.97e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.30e-30;14!DOID:299;1.10e-20;25!DOID:7;1.18e-14;39!DOID:305;4.69e-13;106!DOID:5093;1.23e-12;4!DOID:1612;1.23e-12;4!DOID:0050687;5.12e-11;143!DOID:1324;2.57e-09;15!DOID:0050615;1.15e-08;16!DOID:3001;3.78e-08;6!DOID:4468;1.56e-07;2!DOID:3119;2.96e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.76e-48,106;DOID:0050687,3.07e-38,143;DOID:1749,1.98e-30,14;DOID:162,5.69e-23,235;DOID:14566,3.11e-22,239;DOID:299,9.68e-21,25;DOID:7,1.87e-18,39;DOID:5093,5.69e-13,4;DOID:1612,5.69e-13,4;DOID:0050686,5.68e-10,137;DOID:1324,2.58e-09,15;DOID:0050615,1.16e-08,16;DOID:3001,4.23e-08,6;DOID:4468,1.40e-07,2;DOID:3119,3.79e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0001007!2.80e-16!155;UBERON:0001555!2.80e-16!155;UBERON:0007026!2.80e-16!155;UBERON:0004119!1.27e-15!169;UBERON:0000925!1.27e-15!169;UBERON:0006595!1.27e-15!169;UBERON:0005911!1.66e-13!82;UBERON:0000344!1.10e-11!12;UBERON:0004921!1.91e-11!129;UBERON:0004185!1.91e-11!129;UBERON:0000077!3.72e-10!130;UBERON:0005409!4.93e-09!35;UBERON:0000466!3.23e-08!126;UBERON:0003929!4.82e-08!54;UBERON:0000160!1.01e-07!27;UBERON:0005153!1.27e-07!37;UBERON:0005177!2.75e-07!107;UBERON:0000464!3.58e-07!104;UBERON:0001041!3.84e-07!98;UBERON:0004907!6.93e-07!5;UBERON:0003729!7.48e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002048;1.12e-09;22!UBERON:0000117;1.12e-09;22!UBERON:0000171;1.12e-09;22!UBERON:0000170;1.12e-09;22!UBERON:0003343;1.64e-07;4!UBERON:0004785;1.64e-07;4!UBERON:0005911;2.19e-07;36!UBERON:0001052;2.27e-07;4!UBERON:0004802;3.97e-07;19!UBERON:0000115;3.97e-07;19!UBERON:0005409;4.66e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005911,3.69e-15,82;UBERON:0004119,4.69e-12,160;UBERON:0000925,4.69e-12,160;UBERON:0006595,4.69e-12,160;UBERON:0001007,5.54e-12,145;UBERON:0001555,5.54e-12,145;UBERON:0007026,5.54e-12,145;UBERON:0005153,3.38e-11,37;UBERON:0004921,1.37e-10,118;UBERON:0002048,9.03e-10,22;UBERON:0000117,9.03e-10,22;UBERON:0000171,9.03e-10,22;UBERON:0000170,9.03e-10,22;UBERON:0005597,9.03e-10,22;UBERON:0000118,9.03e-10,22;UBERON:0005157,3.45e-08,47;UBERON:0001052,1.69e-07,4;UBERON:0003343,1.89e-07,4;UBERON:0004785,1.89e-07,4;UBERON:0000915,3.85e-07,52;UBERON:0004802,3.99e-07,19;UBERON:0000115,3.99e-07,19;UBERON:0001046,4.88e-07,19;UBERON:0009569,7.70e-07,112 | |||
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| ||
|short_description=p@chr17:62770351..62770363,- | |||
}} | }} |
Latest revision as of 19:55, 25 July 2015
Short description: | p@chr17:62770351..62770363, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:62770351..62770363, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.21e-20 | 253 |
endodermal cell | 8.45e-14 | 58 |
endo-epithelial cell | 1.27e-10 | 42 |
epithelial cell of uterus | 4.23e-08 | 6 |
stromal cell of endometrium | 4.23e-08 | 6 |
epithelial cell of lung | 3.99e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
endo-epithelium | 3.69e-15 | 82 |
endoderm-derived structure | 4.69e-12 | 160 |
endoderm | 4.69e-12 | 160 |
presumptive endoderm | 4.69e-12 | 160 |
digestive system | 5.54e-12 | 145 |
digestive tract | 5.54e-12 | 145 |
primitive gut | 5.54e-12 | 145 |
epithelial bud | 3.38e-11 | 37 |
subdivision of digestive tract | 1.37e-10 | 118 |
lung | 9.03e-10 | 22 |
respiratory tube | 9.03e-10 | 22 |
respiration organ | 9.03e-10 | 22 |
pair of lungs | 9.03e-10 | 22 |
lung primordium | 9.03e-10 | 22 |
lung bud | 9.03e-10 | 22 |
epithelial fold | 3.45e-08 | 47 |
rectum | 1.69e-07 | 4 |
mucosa of oral region | 1.89e-07 | 4 |
respiratory system mucosa | 1.89e-07 | 4 |
thoracic segment of trunk | 3.85e-07 | 52 |
respiratory tract epithelium | 3.99e-07 | 19 |
lung epithelium | 3.99e-07 | 19 |
hindgut | 4.88e-07 | 19 |
subdivision of trunk | 7.70e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.76e-48 | 106 |
cell type cancer | 3.07e-38 | 143 |
squamous cell carcinoma | 1.98e-30 | 14 |
cancer | 5.69e-23 | 235 |
disease of cellular proliferation | 3.11e-22 | 239 |
adenocarcinoma | 9.68e-21 | 25 |
disease of anatomical entity | 1.87e-18 | 39 |
thoracic cancer | 5.69e-13 | 4 |
breast cancer | 5.69e-13 | 4 |
organ system cancer | 5.68e-10 | 137 |
lung cancer | 2.58e-09 | 15 |
respiratory system cancer | 1.16e-08 | 16 |
female reproductive endometrioid cancer | 4.23e-08 | 6 |
clear cell adenocarcinoma | 1.40e-07 | 2 |
gastrointestinal system cancer | 3.79e-07 | 14 |