FFCP PHASE1:Hg19::chr17:39775692..39775700,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:39775692..39775700,+
|short_description=p3@CU687211
|description=CAGE_peak_3_at_CU687211_5end
|association_with_transcript=-146bp_to_CU687211_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-146bp_to_CU687211_5end | |||
|cluster_id=chr17:39775692..39775700,+ | |||
|coexpression_cluster_id=C1170 | |||
|description=CAGE_peak_3_at_CU687211_5end | |||
|id=chr17:39775692..39775700,+ | |||
|ontology_enrichment_celltype=CL:0002076!1.07e-23!43;CL:0000066!8.72e-22!254;CL:0002368!2.79e-21!13;CL:0000223!2.55e-17!59;CL:0002159!8.26e-13!13;CL:0002202!7.91e-12!9;CL:0002632!7.91e-12!9;CL:0002328!5.15e-10!3;CL:0000068!7.10e-10!3;CL:0000069!7.10e-10!3;CL:0000307!7.10e-10!3;CL:0000377!7.10e-10!3;CL:0002166!2.71e-09!3;CL:0002251!5.93e-09!21;CL:0002541!6.57e-09!3;CL:0002621!7.13e-09!3;CL:0000244!4.53e-07!4;CL:0000731!4.53e-07!4;CL:0000575!4.55e-07!2;CL:0002327!9.81e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.91e-38;13!CL:0002202;7.28e-32;9!CL:0002632;7.28e-32;9!CL:0002328;5.15e-25;3!CL:0000307;9.48e-25;3!CL:0000575;1.44e-16;2!CL:0002076;3.40e-13;42!CL:0002252;1.11e-09;1!CL:0002159;3.09e-09;14!CL:0000222;3.82e-09;1!CL:0000244;5.09e-09;4!CL:0000731;5.09e-09;4!CL:0002537;2.28e-07;5!CL:0000349;4.51e-07;19!CL:0000082;5.74e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.69e-38,13;CL:0002202,7.49e-32,9;CL:0002632,7.49e-32,9;CL:0002328,4.57e-25,3;CL:0000068,1.12e-24,3;CL:0000069,1.12e-24,3;CL:0000307,1.12e-24,3;CL:0000377,1.12e-24,3;CL:0002076,1.36e-17,42;CL:0000575,7.02e-17,2;CL:0000223,2.65e-12,58;CL:0002252,1.12e-09,1;CL:0002159,2.71e-09,14;CL:0000244,5.30e-09,4;CL:0000731,5.30e-09,4;CL:0000066,4.14e-08,253;CL:0002537,2.43e-07,5;CL:0000349,4.70e-07,19;CL:0000082,5.60e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000377;9.48e-25;3!CL:0000223;8.39e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3151;3.82e-09;1!DOID:3149;3.82e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,5.72e-09,1;DOID:3149,5.72e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0001004!6.47e-21!72;UBERON:0000065!7.39e-18!53;UBERON:0004119!1.79e-14!169;UBERON:0000925!1.79e-14!169;UBERON:0006595!1.79e-14!169;UBERON:0000072!2.84e-13!46;UBERON:0005631!1.02e-11!14;UBERON:0000158!1.02e-11!14;UBERON:0008947!3.09e-11!38;UBERON:0003258!3.09e-11!38;UBERON:0001737!3.94e-10!9;UBERON:0004815!5.15e-10!3;UBERON:0002031!5.15e-10!3;UBERON:0001557!9.39e-10!19;UBERON:0007196!1.84e-09!14;UBERON:0001558!1.84e-09!14;UBERON:0000476!6.57e-09!3;UBERON:0000920!6.57e-09!3;UBERON:0001949!7.13e-09!3;UBERON:0001041!7.29e-09!98;UBERON:0000166!9.09e-09!21;UBERON:0001723!1.10e-08!3;UBERON:0001033!1.10e-08!3;UBERON:0010056!1.10e-08!3;UBERON:0001007!1.12e-08!155;UBERON:0001555!1.12e-08!155;UBERON:0007026!1.12e-08!155;UBERON:0000064!8.31e-08!219;UBERON:0000165!1.07e-07!28;UBERON:0000930!1.07e-07!28;UBERON:0002185!1.39e-07!4;UBERON:0000077!1.39e-07!130;UBERON:0004921!1.83e-07!129;UBERON:0004185!1.83e-07!129;UBERON:0001708!4.72e-07!4;UBERON:0001704!4.72e-07!4;UBERON:0000161!5.45e-07!35;UBERON:0003126!9.62e-07!7;UBERON:0001005!9.62e-07!7;UBERON:0001911!9.81e-07!4;UBERON:0005333!9.81e-07!4;UBERON:0008425!9.81e-07!4;UBERON:0005311!9.81e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;5.15e-25;3!UBERON:0002031;5.15e-25;3!UBERON:0007196;5.75e-19;15!UBERON:0001558;5.75e-19;15!UBERON:0002185;2.94e-15;5!UBERON:0005178;2.73e-13;34!UBERON:0002224;2.73e-13;34!UBERON:0005181;7.52e-13;35!UBERON:0000485;4.70e-11;7!UBERON:0003126;6.07e-11;7!UBERON:0001005;6.07e-11;7!UBERON:0000065;1.22e-10;44!UBERON:0005911;2.27e-09;36!UBERON:0000072;3.66e-09;37!UBERON:0004807;5.13e-09;22!UBERON:0000964;9.61e-09;4!UBERON:0010409;9.61e-09;4!UBERON:0005631;7.59e-08;10!UBERON:0000158;7.59e-08;10!UBERON:0000365;2.21e-07;5!UBERON:0004802;5.74e-07;19!UBERON:0000115;5.74e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,4.57e-25,3;UBERON:0002031,4.57e-25,3;UBERON:0007196,5.85e-19,15;UBERON:0001558,5.85e-19,15;UBERON:0002185,2.74e-15,5;UBERON:0005178,3.91e-14,34;UBERON:0002224,3.91e-14,34;UBERON:0005181,1.06e-13,35;UBERON:0003126,6.51e-11,7;UBERON:0001005,6.51e-11,7;UBERON:0000065,1.07e-10,54;UBERON:0008947,1.32e-09,38;UBERON:0003258,1.32e-09,38;UBERON:0005631,1.56e-09,14;UBERON:0000158,1.56e-09,14;UBERON:0001004,3.11e-09,74;UBERON:0000964,6.73e-09,4;UBERON:0010409,6.73e-09,4;UBERON:0004348,6.73e-09,4;UBERON:0005427,6.73e-09,4;UBERON:0000915,7.13e-09,52;UBERON:0000485,1.01e-08,9;UBERON:0000072,1.29e-07,47;UBERON:0000365,2.28e-07,5;UBERON:0004119,2.71e-07,160;UBERON:0000925,2.71e-07,160;UBERON:0006595,2.71e-07,160;UBERON:0004807,4.88e-07,28;UBERON:0004802,5.60e-07,19;UBERON:0000115,5.60e-07,19 | |||
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| ||
|short_description=p3@CU687211 | |||
}} | }} |
Latest revision as of 16:45, 25 July 2015
Short description: | p3@CU687211 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CU687211_5end |
Coexpression cluster: | C1170_Placental_Bronchial_nasal_Esophageal_Urothelial_Corneal_Keratinocyte |
Association with transcript: | -146bp_to_CU687211_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 1.69e-38 | 13 |
epithelial cell of tracheobronchial tree | 7.49e-32 | 9 |
epithelial cell of lower respiratory tract | 7.49e-32 | 9 |
bronchial epithelial cell | 4.57e-25 | 3 |
duct epithelial cell | 1.12e-24 | 3 |
branched duct epithelial cell | 1.12e-24 | 3 |
tracheal epithelial cell | 1.12e-24 | 3 |
tracheoblast | 1.12e-24 | 3 |
endo-epithelial cell | 1.36e-17 | 42 |
corneal epithelial cell | 7.02e-17 | 2 |
endodermal cell | 2.65e-12 | 58 |
epithelial cell of esophagus | 1.12e-09 | 1 |
general ecto-epithelial cell | 2.71e-09 | 14 |
transitional epithelial cell | 5.30e-09 | 4 |
urothelial cell | 5.30e-09 | 4 |
epithelial cell | 4.14e-08 | 253 |
amnion mesenchymal stem cell | 2.43e-07 | 5 |
extraembryonic cell | 4.70e-07 | 19 |
epithelial cell of lung | 5.60e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 4.57e-25 | 3 |
epithelium of bronchus | 4.57e-25 | 3 |
tracheobronchial tree | 5.85e-19 | 15 |
lower respiratory tract | 5.85e-19 | 15 |
bronchus | 2.74e-15 | 5 |
thoracic cavity element | 3.91e-14 | 34 |
thoracic cavity | 3.91e-14 | 34 |
thoracic segment organ | 1.06e-13 | 35 |
trachea | 6.51e-11 | 7 |
respiratory airway | 6.51e-11 | 7 |
respiratory tract | 1.07e-10 | 54 |
respiratory primordium | 1.32e-09 | 38 |
endoderm of foregut | 1.32e-09 | 38 |
extraembryonic membrane | 1.56e-09 | 14 |
membranous layer | 1.56e-09 | 14 |
respiratory system | 3.11e-09 | 74 |
cornea | 6.73e-09 | 4 |
eye surface | 6.73e-09 | 4 |
optic eminence | 6.73e-09 | 4 |
corneal primordium | 6.73e-09 | 4 |
thoracic segment of trunk | 7.13e-09 | 52 |
simple columnar epithelium | 1.01e-08 | 9 |
segment of respiratory tract | 1.29e-07 | 47 |
urothelium | 2.28e-07 | 5 |
endoderm-derived structure | 2.71e-07 | 160 |
endoderm | 2.71e-07 | 160 |
presumptive endoderm | 2.71e-07 | 160 |
respiratory system epithelium | 4.88e-07 | 28 |
respiratory tract epithelium | 5.60e-07 | 19 |
lung epithelium | 5.60e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 5.72e-09 | 1 |
keratoacanthoma | 5.72e-09 | 1 |