FFCP PHASE1:Hg19::chr17:25583027..25583030,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:25583027..25583030,- to FFCP PHASE1:Hg19::chr17:25583027..25583030,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr17:25583027..25583030,- | |||
|description=CAGE_peak_at_chr17:25583027..25583030,- | |||
|id=chr17:25583027..25583030,- | |||
|ontology_enrichment_celltype=CL:0002076!2.07e-29!43;CL:0002159!4.51e-22!13;CL:0000223!1.47e-21!59;CL:0002368!1.59e-20!13;CL:0000066!3.23e-20!254;CL:0000622!5.48e-15!5;CL:0002251!2.20e-14!21;CL:0000154!2.02e-12!6;CL:0000076!1.36e-11!62;CL:0002202!1.96e-11!9;CL:0002632!1.96e-11!9;CL:0002077!1.15e-10!33;CL:0002166!2.44e-10!3;CL:0002623!4.18e-10!3;CL:0000068!1.24e-09!3;CL:0000069!1.24e-09!3;CL:0000307!1.24e-09!3;CL:0000377!1.24e-09!3;CL:0002328!1.27e-09!3;CL:0000362!2.91e-09!8;CL:0000240!1.34e-08!6;CL:0000311!1.34e-08!6;CL:0000079!1.34e-08!6;CL:0000237!1.34e-08!6;CL:0000036!1.34e-08!6;CL:0000357!1.34e-08!6;CL:0000114!1.34e-08!6;CL:0000150!3.88e-08!9;CL:0000244!1.34e-07!4;CL:0000731!1.34e-07!4;CL:0002327!1.98e-07!4;CL:0000575!2.05e-07!2;CL:0000220!3.14e-07!246;CL:0002321!4.20e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0002159;2.63e-31;14!CL:0002368;5.46e-25;13!CL:0002202;6.17e-21;9!CL:0002632;6.17e-21;9!CL:0002166;5.52e-18;3!CL:0000622;6.54e-18;5!CL:0002623;1.60e-17;3!CL:0000307;9.57e-17;3!CL:0002328;1.13e-16;3!CL:0002076;2.17e-16;42!CL:0002077;2.88e-15;34!CL:0000240;2.91e-15;6!CL:0000311;2.91e-15;6!CL:0000079;2.91e-15;6!CL:0000237;2.91e-15;6!CL:0000154;5.92e-15;6!CL:0000244;4.03e-13;4!CL:0000731;4.03e-13;4!CL:0000575;1.57e-12;2!CL:0000312;7.63e-11;5!CL:0000362;4.21e-10;9!CL:0000150;5.20e-10;9!CL:0002252;3.32e-07;1!CL:0002251;7.90e-07;20!CL:0002336;8.75e-07;1!CL:0002261;8.75e-07;1!CL:0002170;8.75e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,3.38e-31,14;CL:0002368,6.44e-25,13;CL:0002076,2.94e-22,42;CL:0002202,7.38e-21,9;CL:0002632,7.38e-21,9;CL:0002166,5.52e-18,3;CL:0000622,7.97e-18,5;CL:0002077,1.10e-17,34;CL:0002623,1.52e-17,3;CL:0000066,2.43e-17,253;CL:0000068,1.16e-16,3;CL:0000069,1.16e-16,3;CL:0000307,1.16e-16,3;CL:0000377,1.16e-16,3;CL:0002328,1.22e-16,3;CL:0000223,2.60e-15,58;CL:0000240,2.71e-15,6;CL:0000311,2.71e-15,6;CL:0000079,2.71e-15,6;CL:0000237,2.71e-15,6;CL:0000036,2.71e-15,6;CL:0000357,2.71e-15,6;CL:0000114,2.71e-15,6;CL:0000154,6.97e-15,6;CL:0000244,3.49e-13,4;CL:0000731,3.49e-13,4;CL:0000575,1.61e-12,2;CL:0000312,7.89e-11,5;CL:0000362,4.91e-10,9;CL:0000150,5.79e-10,9;CL:0002321,3.53e-09,250;CL:0000221,2.03e-08,72;CL:0002252,3.32e-07,1;CL:0002336,7.39e-07,1;CL:0002261,7.39e-07,1;CL:0002170,7.39e-07,1;CL:0002251,7.51e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000377;9.57e-17;3!CL:0000357;2.91e-15;6!CL:0000114;2.91e-15;6!CL:0000223;1.04e-08;58 | |||
|ontology_enrichment_disease=DOID:1749!5.41e-17!14 | |||
|ontology_enrichment_disease_v019=DOID:3151;8.75e-07;1!DOID:3149;8.75e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,9.25e-07,1;DOID:3149,9.25e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001004!1.49e-17!72;UBERON:0000166!8.34e-14!21;UBERON:0003729!9.14e-14!5;UBERON:0000974!5.52e-12!10;UBERON:0000165!7.95e-12!28;UBERON:0000930!7.95e-12!28;UBERON:0004119!3.27e-11!169;UBERON:0000925!3.27e-11!169;UBERON:0006595!3.27e-11!169;UBERON:0003343!4.88e-11!4;UBERON:0004785!4.88e-11!4;UBERON:0000161!1.77e-10!35;UBERON:0003102!6.32e-10!95;UBERON:0004815!1.27e-09!3;UBERON:0002031!1.27e-09!3;UBERON:0000065!2.08e-09!53;UBERON:0007196!3.07e-09!14;UBERON:0001558!3.07e-09!14;UBERON:0001444!2.21e-08!48;UBERON:0001708!7.91e-08!4;UBERON:0001704!7.91e-08!4;UBERON:0000344!1.42e-07!12;UBERON:0001911!1.98e-07!4;UBERON:0005333!1.98e-07!4;UBERON:0008425!1.98e-07!4;UBERON:0005311!1.98e-07!4;UBERON:0002185!2.68e-07!4;UBERON:0003408!6.04e-07!10;UBERON:0005631!9.96e-07!14;UBERON:0000158!9.96e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.13e-16;3!UBERON:0002031;1.13e-16;3!UBERON:0001708;1.28e-13;4!UBERON:0008895;1.28e-13;4!UBERON:0007196;2.36e-12;15!UBERON:0001558;2.36e-12;15!UBERON:0011159;5.47e-11;5!UBERON:0000365;1.36e-10;5!UBERON:0002185;3.24e-10;5!UBERON:0001041;8.56e-10;14!UBERON:0001044;5.28e-09;6!UBERON:0003293;5.28e-09;6!UBERON:0003294;5.28e-09;6!UBERON:0010047;5.28e-09;6!UBERON:0003408;5.28e-09;6!UBERON:0000167;5.28e-09;6!UBERON:0005178;5.54e-09;34!UBERON:0002224;5.54e-09;34!UBERON:0005910;6.64e-09;6!UBERON:0005181;1.82e-08;35!UBERON:0001043;2.50e-08;3!UBERON:0003126;1.86e-07;7!UBERON:0001005;1.86e-07;7!UBERON:0000485;1.99e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.22e-16,3;UBERON:0002031,1.22e-16,3;UBERON:0001708,1.29e-13,4;UBERON:0008895,1.29e-13,4;UBERON:0007196,2.62e-12,15;UBERON:0001558,2.62e-12,15;UBERON:0011159,5.48e-11,5;UBERON:0000365,1.21e-10,5;UBERON:0002185,3.40e-10,5;UBERON:0003102,1.85e-09,99;UBERON:0010188,3.14e-09,6;UBERON:0002539,3.14e-09,6;UBERON:0008816,3.14e-09,6;UBERON:0001044,5.14e-09,6;UBERON:0003293,5.14e-09,6;UBERON:0003294,5.14e-09,6;UBERON:0010047,5.14e-09,6;UBERON:0000167,5.14e-09,6;UBERON:0005910,6.05e-09,6;UBERON:0005178,6.10e-09,34;UBERON:0002224,6.10e-09,34;UBERON:0005181,1.19e-08,35;UBERON:0001043,2.64e-08,3;UBERON:0009143,2.64e-08,3;UBERON:0004119,5.00e-08,160;UBERON:0000925,5.00e-08,160;UBERON:0006595,5.00e-08,160;UBERON:0003126,2.02e-07,7;UBERON:0001005,2.02e-07,7;UBERON:0001004,9.78e-07,74 | |||
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| ||
|short_description=p@chr17:25583027..25583030,- | |||
}} | }} |
Latest revision as of 14:49, 25 July 2015
Short description: | p@chr17:25583027..25583030, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:25583027..25583030, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.22e-16 | 3 |
epithelium of bronchus | 1.22e-16 | 3 |
jaw skeleton | 1.29e-13 | 4 |
splanchnocranium | 1.29e-13 | 4 |
tracheobronchial tree | 2.62e-12 | 15 |
lower respiratory tract | 2.62e-12 | 15 |
primary subdivision of cranial skeletal system | 5.48e-11 | 5 |
urothelium | 1.21e-10 | 5 |
bronchus | 3.40e-10 | 5 |
surface structure | 1.85e-09 | 99 |
protuberance | 3.14e-09 | 6 |
pharyngeal arch | 3.14e-09 | 6 |
embryonic head | 3.14e-09 | 6 |
saliva-secreting gland | 5.14e-09 | 6 |
gland of oral region | 5.14e-09 | 6 |
gland of foregut | 5.14e-09 | 6 |
oral gland | 5.14e-09 | 6 |
oral cavity | 5.14e-09 | 6 |
transitional epithelium | 6.05e-09 | 6 |
thoracic cavity element | 6.10e-09 | 34 |
thoracic cavity | 6.10e-09 | 34 |
thoracic segment organ | 1.19e-08 | 35 |
esophagus | 2.64e-08 | 3 |
esophageal region | 2.64e-08 | 3 |
endoderm-derived structure | 5.00e-08 | 160 |
endoderm | 5.00e-08 | 160 |
presumptive endoderm | 5.00e-08 | 160 |
trachea | 2.02e-07 | 7 |
respiratory airway | 2.02e-07 | 7 |
respiratory system | 9.78e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 9.25e-07 | 1 |
keratoacanthoma | 9.25e-07 | 1 |