FFCP PHASE1:Hg19::chr16:55539899..55539914,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:55539899..55539914,+
|short_description=p@chr16:55539899..55539914,+
|description=CAGE_peak_at_chr16:55539899..55539914,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr16:55539899..55539914,+ | |||
|coexpression_cluster_id=C351 | |||
|description=CAGE_peak_at_chr16:55539899..55539914,+ | |||
|id=chr16:55539899..55539914,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.09e-38!180;CL:0000680!2.51e-17!57;CL:0000056!2.51e-17!57;CL:0000355!2.51e-17!57;CL:0000057!4.29e-17!75;CL:0000187!4.92e-16!54;CL:0000183!9.20e-16!59;CL:0000393!8.70e-14!60;CL:0000211!8.70e-14!60;CL:0000192!3.42e-13!42;CL:0000514!3.42e-13!42;CL:0000222!6.94e-11!119;CL:0000359!1.06e-09!32;CL:0002620!2.37e-09!23;CL:0002371!8.10e-09!591;CL:0002334!2.05e-08!12;CL:0000048!1.06e-07!430;CL:0000144!3.06e-07!625;CL:0000723!3.20e-07!436;CL:0000220!9.00e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002334;6.13e-12;12!CL:0002620;9.65e-11;23!CL:0000192;9.93e-09;43!CL:0000359;7.01e-08;32!CL:0000134;9.52e-08;55!CL:0000499;2.27e-07;28!CL:0002320;3.77e-07;188!CL:0000187;3.90e-07;55!CL:0000048;5.18e-07;58!CL:0000723;5.51e-07;61!CL:0002539;8.89e-07;10!CL:0000153;9.91e-07;9!CL:0000447;9.91e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.45e-17,76;CL:0000048,1.44e-16,427;CL:0000723,9.11e-16,433;CL:0000034,9.65e-15,441;CL:0000680,1.89e-14,58;CL:0000056,1.89e-14,58;CL:0000355,1.89e-14,58;CL:0000187,8.41e-13,55;CL:0000192,2.69e-12,43;CL:0000514,2.69e-12,43;CL:0002334,6.37e-12,12;CL:0002620,1.35e-10,23;CL:0000393,1.60e-10,61;CL:0000211,1.60e-10,61;CL:0002320,1.27e-08,361;CL:0000359,3.88e-08,32;CL:0000136,7.28e-08,15;CL:0000134,1.77e-07,354;CL:0000499,2.20e-07,28;CL:0000222,3.75e-07,121;CL:0000219,5.57e-07,386;CL:0002539,9.95e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000514;9.93e-09;43!CL:0000355;2.43e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!2.07e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;8.76e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,8.11e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0002385!2.32e-17!63;UBERON:0001015!2.32e-17!63;UBERON:0000383!2.32e-17!63;UBERON:0000914!2.64e-17!83;UBERON:0002329!2.64e-17!83;UBERON:0003077!2.64e-17!83;UBERON:0003059!2.64e-17!83;UBERON:0007282!2.64e-17!83;UBERON:0009618!2.64e-17!83;UBERON:0007285!2.64e-17!83;UBERON:0001134!3.77e-17!61;UBERON:0002036!3.77e-17!61;UBERON:0003082!3.77e-17!61;UBERON:0004290!8.47e-17!70;UBERON:0000486!1.98e-16!82;UBERON:0005256!4.45e-13!143;UBERON:0004872!6.26e-13!84;UBERON:0004573!4.36e-12!33;UBERON:0004571!4.36e-12!33;UBERON:0001981!7.67e-12!60;UBERON:0007500!7.67e-12!60;UBERON:0004537!7.67e-12!60;UBERON:0006965!7.67e-12!60;UBERON:0001637!2.35e-10!42;UBERON:0003509!2.35e-10!42;UBERON:0004572!2.35e-10!42;UBERON:0002049!2.52e-10!79;UBERON:0007798!2.52e-10!79;UBERON:0000490!2.56e-10!138;UBERON:0002100!5.94e-10!216;UBERON:0000055!1.69e-09!69;UBERON:0000947!1.89e-08!21;UBERON:0010191!1.89e-08!21;UBERON:0003914!2.20e-08!118;UBERON:0004535!2.43e-08!110;UBERON:0001009!4.56e-08!113;UBERON:0000475!8.29e-08!365;UBERON:0003102!9.16e-08!95;UBERON:0001135!2.08e-07!15;UBERON:0002199!4.88e-07!45;UBERON:0002416!4.88e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.78e-10;9!UBERON:0000042;2.78e-10;9!UBERON:0004573;3.22e-10;33!UBERON:0004571;3.22e-10;33!UBERON:0003688;7.64e-08;6!UBERON:0002358;7.64e-08;6!UBERON:0003684;7.64e-08;6!UBERON:0001178;7.64e-08;6!UBERON:0002384;1.15e-07;198!UBERON:0000947;1.69e-07;21!UBERON:0010191;1.69e-07;21!UBERON:0002199;2.58e-07;46!UBERON:0002416;2.58e-07;46!UBERON:0001637;6.58e-07;42!UBERON:0003509;6.58e-07;42!UBERON:0004572;6.58e-07;42!UBERON:0004237;8.89e-07;10!UBERON:0004695;8.89e-07;10!UBERON:0002111;8.89e-07;10!UBERON:0004178;8.89e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,3.47e-13,73;UBERON:0002329,6.74e-13,71;UBERON:0003059,6.74e-13,71;UBERON:0007282,6.74e-13,71;UBERON:0004290,6.74e-13,71;UBERON:0009618,6.74e-13,71;UBERON:0001134,9.11e-13,62;UBERON:0002036,9.11e-13,62;UBERON:0003082,9.11e-13,62;UBERON:0003077,1.51e-12,72;UBERON:0007285,1.51e-12,72;UBERON:0002385,5.16e-12,64;UBERON:0001015,5.16e-12,64;UBERON:0000383,5.16e-12,64;UBERON:0007503,5.30e-12,78;UBERON:0000486,1.17e-11,83;UBERON:0004573,2.33e-11,33;UBERON:0004571,2.33e-11,33;UBERON:0005256,1.30e-10,122;UBERON:0002199,2.80e-10,46;UBERON:0002416,2.80e-10,46;UBERON:0002384,4.07e-09,371;UBERON:0001637,5.74e-09,42;UBERON:0003509,5.74e-09,42;UBERON:0004572,5.74e-09,42;UBERON:0000926,8.71e-09,315;UBERON:0004120,8.71e-09,315;UBERON:0006603,8.71e-09,315;UBERON:0003104,2.43e-08,160;UBERON:0009142,2.43e-08,160;UBERON:0002100,6.11e-08,199;UBERON:0003688,7.90e-08,6;UBERON:0002358,7.90e-08,6;UBERON:0003684,7.90e-08,6;UBERON:0001178,7.90e-08,6;UBERON:0002097,1.50e-07,41;UBERON:0000947,2.05e-07,21;UBERON:0010191,2.05e-07,21;UBERON:0004872,2.72e-07,83;UBERON:0004457,5.43e-07,12;UBERON:0000042,5.43e-07,12;UBERON:0007500,7.24e-07,59;UBERON:0001981,7.24e-07,59;UBERON:0004537,7.24e-07,59;UBERON:0006965,7.24e-07,59;UBERON:0004237,9.95e-07,10;UBERON:0004695,9.95e-07,10;UBERON:0002111,9.95e-07,10;UBERON:0004178,9.95e-07,10 | |||
|phase1_expression=13.8075568245623,6.20891519283851,7.18867460889453,7.00513088471913,21.0071714380825,6.97870819280295,5.06599756336621,2.52687949370732,6.26845507679612,0,0,0,0.263766978228454,1.36142988256051,0.994192127183747,13.4465029290355,12.6565850885035,13.1455816269727,14.1500511649247,1.60057375499824,1.83600622119828,1.88072832886853,0.85870796139317,0.410623275218653,0.125542639594803,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,1.34140171940727,0.639312809217652,5.42158728576849,2.00535164254356,1.59331170856906,7.95285947051099,4.37971383272372,0.378139268656271,0.665188192387692,0.175669571386252,0.392937226493138,0,0,0,0,0,0,0,0,0.39752481473341,0,1.04142150482278,0.56530794192401,0,0.275118041940067,0,0,0,0,1.20848795132744,0.760272105718513,0.976248230192678,0.367663080345869,1.62028389576352,0.357198913136319,0.22452937262617,0.225222960966644,0,0,0.366403487860815,0,0,0,9.93943903390637,4.17880688493113,3.97227542439656,20.6522366939146,6.02936249737207,0,1.06748995729705,1.48000529050296,0.933633106199299,0.404132016209064,0.163461903113459,1.36221684880438,0,0,2.18512053781224,1.1409436430889,1.79338416662161,0.117434498643765,0,0.280901613404497,0.408308342509787,0.122834317311768,0.619954687054593,17.8200428592308,9.39614331258516,0,0,0.841680569770331,0.125118519871964,0.277064115484183,0.438977620880838,1.83892677479412,5.70904623845068,0.567160915800105,5.202299434977,3.20336083227851,3.81477422087211,11.1033705551229,3.40073346486848,4.3798891807757,2.04728541964749,9.45147460551091,4.96928726322113,6.05841058185875,4.23429533754577,4.0411514204703,6.74518225781567,2.11579406278045,0.508681776931463,0.386521706326594,0.272746120590835,0,0.121973706129595,0,0.116193942869518,0,0,0.36497735907583,0,9.64861407289328,0,2.78620756819187,2.88751792667834,0,0,0,0,0,0,0,0,0,0,2.80483547606892,0.4115740113314,0,0,0,0,0,0,0.343135620597051,0,0,0,0.0925884451585296,0,1.03993478527958,1.44331342025273,0,0.234817388471643,0.288732895522148,0.462985512576611,0.570762456703795,0,0,0.246217006087397,0.234004265139238,0.297262324577456,0,0.16798212819886,0,0.0895585227028483,0,0,0,0,0.207328115540772,0.144119953416961,0,0.380987365753014,0.381988425558278,0,1.71072446022705,0.308482478109971,0.600686115687835,1.42913216315289,0.448524337381443,0.43596006883328,0.2933531432838,9.43683525031778,0,0.845302752556,5.58470044828228,2.08014873822732,0.514414748524284,1.41849132023278,0,2.7165818795048,2.71310802695722,0,0.65147236858747,2.13235169245527,0.791951872933429,1.80863626235752,0.871533458600294,0,0,0,0,0.239624855491583,0,4.27910715122155,1.88215698667853,3.08214483825575,3.04403637507822,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0.24538298343828,2.00068208423871,2.17012018959788,3.11956292296211,6.42344359669782,5.20417969611984,1.87426263988341,2.70851489754947,2.27407504055985,5.17365356462525,3.98535359121262,0.921845842708516,3.73599542212756,4.89502893656851,4.46086450954113,0,0,0,0,0,0,23.322133934965,4.75732117192994,10.9457436828899,9.35415789566617,6.65219423786715,5.46903331888265,4.45254199334973,2.15893571323718,2.48586415438378,2.38168752440047,3.11552657510173,5.22946703069817,0.120859449591622,0.601519410909855,0.0920809889358963,3.3296189967736,3.09554985611419,2.75361271414791,0,0.0770153371044148,0,0,0.211103257785751,0,0,1.51141141271498,1.54227252690289,0.270946437543853,0,0,0,0.223874754722178,0,0,0,0,0.976135183992909,0.721287081534056,0,0.165018999841176,0,0,1.6068392984416,4.44685304143761,0.154048617114644,0.460511024178389,0.275673144969061,2.25582514223375,0.435050081742686,0.681813019328807,1.95870478422822,0,0.192190067365106,0.127612712494584,0,5.11330104227014,23.9257383591286,0.6970372701606,0.308033580176089,1.06461206063404,1.73986598415015,4.633105477598,0.572499546967965,0.744316738719335,2.84741482246853,0.190630193923825,0.255897791311334,5.99114583247489,0,0.78494864019923,4.49681143958287,1.64722217841633,0.942499218765491,3.43710218674637,1.58510321173008,5.05510147486777,1.46290121726877,3.65570234446927,5.28250733783777,3.8219975194236,5.09059555033366,0,1.65409603063837,4.64407282668854,1.75380354101505,1.15755106853338,2.62357900818653,1.21746226177622,0,0.845086807596724,0.286822704408103,0.687743287091848,2.1400263088875,3.54761064070598,5.2776908824416,25.6850016508723,0,0.349934720244983,0.0962221127255121,0,1.08890984861323,1.03558180854457,0,0,0.443430153536676,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399158742865633,0,0,0,0.280797178113459,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,0,0,0,0,0,0,0,1.55832187032068,0,0.211125408127993,0.597743964753209,0.276283915531148,0.251932747854276,2.14764233254525,0,4.3545542272653,0,0,0,0.591860433821602,0,2.22273980289274,0,0,0,0,0,1.44999915086959,0.1137934482855,0,0,0.3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| ||
|short_description=p@chr16:55539899..55539914,+ | |||
}} | }} |
Latest revision as of 09:54, 25 July 2015
Short description: | p@chr16:55539899..55539914, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:55539899..55539914, + |
Coexpression cluster: | C351_Fibroblast_Smooth_mesenchymal_Adipocyte_tenocyte_Synoviocyte_Hair |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.45e-17 | 76 |
multi fate stem cell | 1.44e-16 | 427 |
somatic stem cell | 9.11e-16 | 433 |
stem cell | 9.65e-15 | 441 |
muscle precursor cell | 1.89e-14 | 58 |
myoblast | 1.89e-14 | 58 |
multi-potent skeletal muscle stem cell | 1.89e-14 | 58 |
muscle cell | 8.41e-13 | 55 |
smooth muscle cell | 2.69e-12 | 43 |
smooth muscle myoblast | 2.69e-12 | 43 |
preadipocyte | 6.37e-12 | 12 |
skin fibroblast | 1.35e-10 | 23 |
electrically responsive cell | 1.60e-10 | 61 |
electrically active cell | 1.60e-10 | 61 |
connective tissue cell | 1.27e-08 | 361 |
vascular associated smooth muscle cell | 3.88e-08 | 32 |
fat cell | 7.28e-08 | 15 |
mesenchymal cell | 1.77e-07 | 354 |
stromal cell | 2.20e-07 | 28 |
mesodermal cell | 3.75e-07 | 121 |
motile cell | 5.57e-07 | 386 |
aortic smooth muscle cell | 9.95e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 8.11e-10 | 14 |