FFCP PHASE1:Hg19::chr16:55539265..55539280,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:55539265..55539280,+ to FFCP PHASE1:Hg19::chr16:55539265..55539280,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr16:55539265..55539280,+ | |||
|coexpression_cluster_id=C351 | |||
|description=CAGE_peak_at_chr16:55539265..55539280,+ | |||
|id=chr16:55539265..55539280,+ | |||
|ontology_enrichment_celltype=CL:0000055!8.46e-37!180;CL:0000057!2.88e-19!75;CL:0000680!2.09e-13!57;CL:0000056!2.09e-13!57;CL:0000355!2.09e-13!57;CL:0000192!3.41e-13!42;CL:0000514!3.41e-13!42;CL:0000187!3.89e-12!54;CL:0000183!1.94e-11!59;CL:0002371!1.60e-10!591;CL:0000393!1.84e-10!60;CL:0000211!1.84e-10!60;CL:0000144!1.97e-10!625;CL:0000222!6.18e-10!119;CL:0000359!4.33e-09!32;CL:0002620!5.75e-08!23;CL:0002334!7.87e-08!12;CL:0000048!2.17e-07!430;CL:0000034!5.12e-07!444;CL:0000723!8.18e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0002334;5.01e-11;12!CL:0000192;2.04e-10;43!CL:0000134;3.73e-09;55!CL:0000359;7.63e-09;32!CL:0002620;8.30e-09;23!CL:0000048;1.30e-08;58!CL:0000723;1.88e-08;61!CL:0002320;4.27e-08;188!CL:0002539;5.15e-08;10!CL:0000057;1.39e-07;73!CL:0000499;6.40e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.69e-20,76;CL:0000048,1.30e-16,427;CL:0000723,8.56e-16,433;CL:0000034,3.81e-15,441;CL:0000192,4.45e-14,43;CL:0000514,4.45e-14,43;CL:0000680,8.55e-13,58;CL:0000056,8.55e-13,58;CL:0000355,8.55e-13,58;CL:0000187,3.43e-11,55;CL:0002334,4.95e-11,12;CL:0000393,3.98e-09,61;CL:0000211,3.98e-09,61;CL:0000359,6.50e-09,32;CL:0002620,7.88e-09,23;CL:0002320,1.34e-08,361;CL:0000134,3.83e-08,354;CL:0002539,4.31e-08,10;CL:0000136,7.12e-08,15;CL:0000219,1.84e-07,386;CL:0000499,5.36e-07,28;CL:0000222,6.10e-07,121 | |||
|ontology_enrichment_development_v019=CL:0000514;2.04e-10;43 | |||
|ontology_enrichment_disease=DOID:2394!5.87e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.80e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.44e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0000486!8.73e-14!82;UBERON:0004290!1.29e-13!70;UBERON:0000914!1.64e-13!83;UBERON:0002329!1.64e-13!83;UBERON:0003077!1.64e-13!83;UBERON:0003059!1.64e-13!83;UBERON:0007282!1.64e-13!83;UBERON:0009618!1.64e-13!83;UBERON:0007285!1.64e-13!83;UBERON:0001637!4.67e-13!42;UBERON:0003509!4.67e-13!42;UBERON:0004572!4.67e-13!42;UBERON:0002385!5.30e-13!63;UBERON:0001015!5.30e-13!63;UBERON:0000383!5.30e-13!63;UBERON:0001134!7.66e-13!61;UBERON:0002036!7.66e-13!61;UBERON:0003082!7.66e-13!61;UBERON:0004872!8.09e-13!84;UBERON:0001981!1.60e-11!60;UBERON:0007500!1.60e-11!60;UBERON:0004537!1.60e-11!60;UBERON:0006965!1.60e-11!60;UBERON:0002049!3.54e-11!79;UBERON:0007798!3.54e-11!79;UBERON:0004573!8.32e-11!33;UBERON:0004571!8.32e-11!33;UBERON:0005256!8.97e-11!143;UBERON:0000055!9.94e-10!69;UBERON:0000947!8.57e-09!21;UBERON:0010191!8.57e-09!21;UBERON:0002199!8.77e-09!45;UBERON:0002416!8.77e-09!45;UBERON:0003914!9.08e-09!118;UBERON:0000490!1.55e-08!138;UBERON:0004535!2.24e-08!110;UBERON:0001009!2.85e-08!113;UBERON:0003102!3.81e-08!95;UBERON:0002100!6.05e-08!216;UBERON:0000468!2.39e-07!659;UBERON:0001135!5.44e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.36e-11;33!UBERON:0004571;1.36e-11;33!UBERON:0000947;1.03e-10;21!UBERON:0010191;1.03e-10;21!UBERON:0001637;1.10e-10;42!UBERON:0003509;1.10e-10;42!UBERON:0004572;1.10e-10;42!UBERON:0004457;9.99e-09;9!UBERON:0000042;9.99e-09;9!UBERON:0004237;5.15e-08;10!UBERON:0004695;5.15e-08;10!UBERON:0002111;5.15e-08;10!UBERON:0004178;5.15e-08;10!UBERON:0001135;6.23e-08;15!UBERON:0003688;6.44e-08;6!UBERON:0002358;6.44e-08;6!UBERON:0003684;6.44e-08;6!UBERON:0001178;6.44e-08;6!UBERON:0002384;9.75e-08;198!UBERON:0002199;1.23e-07;46!UBERON:0002416;1.23e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,7.72e-14,42;UBERON:0003509,7.72e-14,42;UBERON:0004572,7.72e-14,42;UBERON:0000486,8.67e-13,83;UBERON:0007524,9.45e-13,73;UBERON:0004573,1.44e-12,33;UBERON:0004571,1.44e-12,33;UBERON:0002329,1.85e-12,71;UBERON:0003059,1.85e-12,71;UBERON:0007282,1.85e-12,71;UBERON:0004290,1.85e-12,71;UBERON:0009618,1.85e-12,71;UBERON:0001134,3.70e-12,62;UBERON:0002036,3.70e-12,62;UBERON:0003082,3.70e-12,62;UBERON:0003077,4.10e-12,72;UBERON:0007285,4.10e-12,72;UBERON:0007503,9.51e-12,78;UBERON:0005256,1.84e-11,122;UBERON:0002385,2.00e-11,64;UBERON:0001015,2.00e-11,64;UBERON:0000383,2.00e-11,64;UBERON:0002199,6.20e-11,46;UBERON:0002416,6.20e-11,46;UBERON:0000947,1.31e-10,21;UBERON:0010191,1.31e-10,21;UBERON:0000926,9.04e-10,315;UBERON:0004120,9.04e-10,315;UBERON:0006603,9.04e-10,315;UBERON:0007500,2.38e-09,59;UBERON:0001981,2.38e-09,59;UBERON:0004537,2.38e-09,59;UBERON:0006965,2.38e-09,59;UBERON:0002384,1.57e-08,371;UBERON:0003104,2.44e-08,160;UBERON:0009142,2.44e-08,160;UBERON:0000490,3.53e-08,148;UBERON:0004237,4.31e-08,10;UBERON:0004695,4.31e-08,10;UBERON:0002111,4.31e-08,10;UBERON:0004178,4.31e-08,10;UBERON:0001135,4.61e-08,15;UBERON:0003102,4.72e-08,99;UBERON:0004872,5.04e-08,83;UBERON:0003688,6.26e-08,6;UBERON:0002358,6.26e-08,6;UBERON:0003684,6.26e-08,6;UBERON:0001178,6.26e-08,6;UBERON:0002100,7.51e-08,199;UBERON:0002097,8.18e-08,41;UBERON:0003914,1.55e-07,117;UBERON:0000055,1.84e-07,68;UBERON:0002049,8.03e-07,78;UBERON:0007798,8.03e-07,78 | |||
|phase1_expression=8.72056220498672,22.0523539607713,6.76581139660662,8.00586386825043,29.0524711377737,4.36169262050184,5.06599756336621,4.42203911398782,6.00726944859629,0,0,0.436882744260345,1.05506791291381,0.866364470720326,0.994192127183747,18.8251041006497,12.0538905604795,7.30310090387373,11.2224543721817,0.738726348460727,2.04000691244253,1.56727360739044,0.572471974262113,0.273748850145768,0.376627918784408,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0.293600439334847,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,1.80719576192283,0,4.20054904986389,1.5905718941022,5.83961844363163,0.0945348171640679,0.221729397462564,0.614843499851882,0.261958150995425,0,0,0,0,0,0,0,0,0.596287222100115,0.860234595106124,1.04142150482278,1.13061588384802,2.93649605346934,4.67700671298115,0.417989933073621,0,0,0,0.402829317109147,0,0.976248230192678,0,15.3926970097534,0.357198913136319,0,0,0,1.89853131913626,0.549605231791222,0,0,0,1.98788780678127,3.29239330327907,3.83986624358335,23.5206029014027,3.90135220418193,0.560677600142307,1.06748995729705,6.166688710429,0.311211035399766,0.942974704487816,0.326923806226917,1.51357427644931,1.72852777344,0.234321431833797,2.49728061464256,0.570471821544449,2.83952493048422,0.117434498643765,0,0.140450806702248,0.204154171254893,0.368502951935304,1.54988671763648,11.8800285728205,13.5996811103206,0,1.43723628363248,0.168336113954066,0.500474079487857,0,1.31693286264251,5.21029252858333,3.45547535485173,0.113432183160021,2.69084453533293,5.55249210928275,2.33125091275518,7.20218630602566,5.15262646192194,0.257640540045629,2.41951913231067,10.801685263441,7.0154643716063,5.04867548488229,3.95814564161887,6.62748832957129,7.81021103536552,2.61955455391865,1.3564847384839,0,0,0,0.121973706129595,0.132529768321485,0.232387885739037,0.414644220061482,1.00928340350251,0.36497735907583,1.56449532329816,29.5890831568727,0,3.25057549622385,2.88751792667834,0,0,0,0,0,0,0,0,0,0,0,1.2347220339942,2.94017422771084,0,0,0,0,0,0.171567810298526,0.219500570817251,0,0,0,0.325808305310325,1.03993478527958,0,0,0.117408694235822,0.144366447761074,0.462985512576611,0.190254152234598,0,0,0,0,0.148631162288728,0,0,0,0.0895585227028483,0,0,0,0,0,0,0.12624243342638,0.126995788584338,0.381988425558278,0,1.71072446022705,0.514137463516618,0.300343057843917,1.42913216315289,0,0,0.22001485746285,5.04159691455333,0,0,8.77595784730073,2.08014873822732,0.771622122786426,0,0.532844358032199,2.28764789853036,6.51145926469732,1.64648067356154,0.325736184293735,1.77695974371273,0.791951872933429,1.80863626235752,1.74306691720059,0.899756920638513,2.43247561282381,0.502257091432126,0,0.239624855491583,0,0,1.59259437334337,5.34238438630997,3.9393411912777,0,0,0,0,0.76228387266739,0,0,0,0,0,0,0,0.49076596687656,3.50119364741774,0.271265023699736,2.07970861530807,11.7763132606127,5.20417969611984,1.99140405487612,1.20378439891088,20.4666753650386,10.3473071292505,4.64957918974806,0.553107505625109,3.5622281931914,1.76221041716467,6.51972505240626,0,0,0,0,0,0.907170879989041,11.9091747753013,7.51963669111506,32.2759108598035,9.09787959715477,12.2809739776009,17.0505156412224,0,7.40206530252747,6.74734556189883,2.21743321237285,10.904343012856,6.2753604368378,0,5.81468763879526,0.0920809889358963,3.21480454860899,6.55528204824181,8.52308697236257,0,0.0770153371044148,0,1.46139224653261,0.73886140225013,2.27466768141793,0,0.215915916102139,3.08454505380579,0,0,0,0,0,0,0,0,0,0.976135183992909,0.515205058238611,0.0915694648183434,0.247528499761764,0.574265537996172,1.30012049207304,1.6068392984416,3.28680442193215,0,0,0.413509717453592,1.07420244868274,1.16013355131383,0.255679882248303,0.712256285173899,0,0.768760269460425,0,0,5.57814659156743,18.2591161161771,0,2.15623506123262,2.66153015158511,1.73986598415015,5.74505079222152,0.858749320451947,0,0.632758849437452,1.33441135746677,2.04718233049067,2.1396949401696,0.318203247925937,1.56989728039846,2.87795932133304,3.0199073270966,1.64937363283961,1.01091240786658,0,1.68503382495592,0.975267478179181,5.11798328225697,3.16950440270266,1.77449884830381,13.8577323314639,2.26016233240486,0,1.99031692572366,6.13831239355268,4.6302042741335,2.62357900818653,0.608731130888112,1.54911749049875,1.40847801266121,0.430234056612155,0.88424136911809,1.07001315444375,2.83808851256478,12.6664581178598,21.0748731494337,0.379473173765715,0.699869440489966,0,0.670302275535787,0,0.564862804660675,4.3050537267123,1.68471475667626,1.33029046061003,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561594356226918,0,0.156679895773023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0,0,0,0,0,0,0,1.00177834520615,0,0,1.19548792950642,0.276283915531148,0,1.53403023753232,0,5.90975216557434,0,0,0,0.887790650732402,0,0,0,0,0,0,0,0,0.568967241427498,0,0,0,0,0,0,0,0,0,0,0,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| 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| ||
|short_description=p@chr16:55539265..55539280,+ | |||
}} | }} |
Latest revision as of 09:53, 25 July 2015
Short description: | p@chr16:55539265..55539280, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:55539265..55539280, + |
Coexpression cluster: | C351_Fibroblast_Smooth_mesenchymal_Adipocyte_tenocyte_Synoviocyte_Hair |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.69e-20 | 76 |
multi fate stem cell | 1.30e-16 | 427 |
somatic stem cell | 8.56e-16 | 433 |
stem cell | 3.81e-15 | 441 |
smooth muscle cell | 4.45e-14 | 43 |
smooth muscle myoblast | 4.45e-14 | 43 |
muscle precursor cell | 8.55e-13 | 58 |
myoblast | 8.55e-13 | 58 |
multi-potent skeletal muscle stem cell | 8.55e-13 | 58 |
muscle cell | 3.43e-11 | 55 |
preadipocyte | 4.95e-11 | 12 |
electrically responsive cell | 3.98e-09 | 61 |
electrically active cell | 3.98e-09 | 61 |
vascular associated smooth muscle cell | 6.50e-09 | 32 |
skin fibroblast | 7.88e-09 | 23 |
connective tissue cell | 1.34e-08 | 361 |
mesenchymal cell | 3.83e-08 | 354 |
aortic smooth muscle cell | 4.31e-08 | 10 |
fat cell | 7.12e-08 | 15 |
motile cell | 1.84e-07 | 386 |
stromal cell | 5.36e-07 | 28 |
mesodermal cell | 6.10e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.44e-11 | 14 |